TCONS_00046677-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046677-protein
Unique NameTCONS_00046677-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046677-protein ID=TCONS_00046677-protein|Name=TCONS_00046677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
XDLTMSVNPYNKKRPGITQVSHRTSLLAGGKQRKTRNGIKEQFTILSSSQ
NKKKFLKVLVPNRNPIEDLYKLFPQLPPGEKPLNDFSCALYKDILLQGKM
IICSSCICFHSNIFGYETRVIIHFKNVVAIKRERTAFVVPNAISVRTVKK
RYLFCSFLSRETSFKLLSRIWKQAVHMEPDENDNSPTDPIKIRPGGAKEA
SDDLLNFSSSSSFGSSFPRPTALPDRPHSSPPSLGGLGVSNNDGMFCSPR
SDLEDCVFTVADMGGDSDCSTESCDSILDRINENTLNNTTNCSHIRRVKS
TSNLSEVAALGHKFCFKNLERIRNDYNSKRHRYHEQHNGPIMASKTKNNE
TCKNPKEILCTISSKFKEYGNILSTRLWHLTSFVNSLRTHHPFLLLISIL
VLLLSIFTFNLLLRINFISDSIQVKNENQKVTDNLRLKNLFEFKEGIHSA
NVERMRSILSVNLETVSEVQKTLRELRDKLKSNDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029789XLOC_029789Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046677TCONS_00046677Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004182GRAM
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004182GRAM domainSMARTSM00568gram2001ccoord: 67..134
e-value: 3.0E-17
score: 73.3
IPR004182GRAM domainPFAMPF02893GRAMcoord: 73..175
e-value: 7.3E-19
score: 67.6
NoneNo IPR availableCDDcd13220PH-GRAM_GRAMDCcoord: 80..171
e-value: 1.35655E-42
score: 146.112

Blast
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BLAST of TCONS_00046677-protein vs. Swiss-Prot (Human)
Match: GRM1B (GRAM domain-containing protein 1B OS=Homo sapiens GN=GRAMD1B PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.427e-26
Identity = 53/134 (39.55%), Postives = 89/134 (66.42%), Query Frame = 0 
Query:   49 SQNKKKFLKVLVP---NRNPIEDLYKLFPQLPPGEKPLNDFSCALYKDILLQGKMIICSSCICFHSNIFGYETRVIIHFKNVVAIKRERTAFVVPNAISVRTVKKRYLFCSFLSRETSFKLLSRIWKQAVHMEP 179
            S+  + +  VL P    RN  ED  KLF QLP  E+ + D+SCAL +DILLQG++ +  + ICF+SNIF +ET + +  K++ ++ +E+TA ++PNAI V T  +++ F SF +R+ ++ ++ R+W+ A+  +P
Sbjct:   77 SKKSQSWYNVLSPTYKQRN--EDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKHFFTSFGARDRTYMMMFRLWQNALLEKP 208
The following BLAST results are available for this feature:
BLAST of TCONS_00046677-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM1B2.427e-2639.55GRAM domain-containing protein 1B OS=Homo sapiens ... [more]
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