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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046677 ID=TCONS_00046677|Name=TCONS_00046677|organism=Clytia hemisphaerica|type=transcript|length=1998bpRun BLAST on NCBI protein sequence of TCONS_00046677-protein >TCONS_00046677-protein ID=TCONS_00046677-protein|Name=TCONS_00046677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp XDLTMSVNPYNKKRPGITQVSHRTSLLAGGKQRKTRNGIKEQFTILSSSQRun BLAST on NCBI transcript from alignment at scaffold_116:797521..826299+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046677 ID=TCONS_00046677|Name=TCONS_00046677|organism=Clytia hemisphaerica|type=transcript|length=28779bp|location=Sequence derived from alignment at scaffold_116:797521..826299+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_116:797521..826299+ >TCONS_00046677 ID=TCONS_00046677|Name=TCONS_00046677|organism=Clytia hemisphaerica|type=CDS|length=18954bp|location=Sequence derived from alignment at scaffold_116:797521..826299+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00046677 vs. Swiss-Prot (Human)
Match: GRM1B (GRAM domain-containing protein 1B OS=Homo sapiens GN=GRAMD1B PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.357e-25 Identity = 53/134 (39.55%), Postives = 89/134 (66.42%), Query Frame = 2
Query: 146 SQNKKKFLKVLVP---NRNPIEDLYKLFPQLPPGEKPLNDFSCALYKDILLQGKMIICSSCICFHSNIFGYETRVIIHFKNVVAIKRERTAFVVPNAISVRTVKKRYLFCSFLSRETSFKLLSRIWKQAVHMEP 538
S+ + + VL P RN ED KLF QLP E+ + D+SCAL +DILLQG++ + + ICF+SNIF +ET + + K++ ++ +E+TA ++PNAI V T +++ F SF +R+ ++ ++ R+W+ A+ +P
Sbjct: 77 SKKSQSWYNVLSPTYKQRN--EDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKHFFTSFGARDRTYMMMFRLWQNALLEKP 208 The following BLAST results are available for this feature:
BLAST of TCONS_00046677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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