TCONS_00046191-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046191-protein
Unique NameTCONS_00046191-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046191-protein ID=TCONS_00046191-protein|Name=TCONS_00046191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MSMLDDKKRSPKCARCRNHGFDSSLKGHKGYCRWRDCMCPKCVLIVERQR
VLAAQVALRRQQMQESKQRPGPLPRGDGFSTKTQLSPNEALQRTKENEIK
VENIENKPSVVSPGPEHKPKSPNIKEFKEKLPKMTGRPSIPSLSPHQAYS
PPFYYRKPIFFKEPPSAFQMWAPHLTKARFHGSPREMQRFTPYPSPPPPT
VPSSSECHRGVDRPCYIDEYCTKKSFVYPPPANMRHEYISHSNPVFQSKT
KEPVDLNNNKATTKGPKSPHYSPVGRISPQSNNDLSSPSSYGRQRSPFMD
RRSPSYIDHHGRSPYGERRSPIYLERRSPPSFDSKHSPIPDRFTKEGASP
TPGVTSPKDTSKTDSHANTPSIEMLARLFPRHQTTTLKNVLSNCNNDPVR
AIEEILDRVPAEDNNNNNSINQKLPPVKNTYSAKRNEPIIDNKHGSNDDL
SNLAKAFDIPVSEEKIRSPKVVHW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029498XLOC_029498Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046191TCONS_00046191Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001275DM_DNA-bd
IPR005173DMA
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001275DM DNA-binding domainSMARTSM00301DM_3coord: 9..62
e-value: 2.1E-22
score: 90.4
IPR001275DM DNA-binding domainPFAMPF00751DMcoord: 9..55
e-value: 5.1E-21
score: 74.2
IPR001275DM DNA-binding domainGENE3D4.10.1040.10coord: 8..55
e-value: 2.1E-22
score: 78.3
IPR001275DM DNA-binding domainPROSITEPS40000DM_1coord: 13..42
IPR001275DM DNA-binding domainPROSITEPS50809DM_2coord: 13..60
score: 13.57
IPR001275DM DNA-binding domainSUPERFAMILY82927Cysteine-rich DNA binding domain, (DM domain)coord: 6..55
IPR005173DMRTA motifPFAMPF03474DMAcoord: 372..404
e-value: 2.8E-9
score: 36.3
NoneNo IPR availableGENE3D1.10.8.10coord: 371..407
e-value: 2.7E-4
score: 20.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..367
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..124

Blast
[Close]
BLAST of TCONS_00046191-protein vs. Swiss-Prot (Human)
Match: DMTA2 (Doublesex- and mab-3-related transcription factor A2 OS=Homo sapiens GN=DMRTA2 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.213e-25
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0 
Query:    9 RSPKCARCRNHGFDSSLKGHKGYCRWRDCMCPKCVLIVERQRVLAAQVALRRQQMQESKQ 68
            R+PKCARCRNHG  S+LKGHK YCRW+DC+C KC LI ERQRV+AAQVALRRQQ QE  +
Sbjct:   66 RTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENE 125
The following BLAST results are available for this feature:
BLAST of TCONS_00046191-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DMTA21.213e-2575.00Doublesex- and mab-3-related transcription factor ... [more]
back to top