TCONS_00045719-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00045719-protein
Unique NameTCONS_00045719-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00045719-protein ID=TCONS_00045719-protein|Name=TCONS_00045719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp
MADEARGEKDEVKKKFSDLGINEILCEACDRLGWKFPSKIQCESIPVSLE
GKDVIALAETGSGKTGAFALPVLHTLLDNPQRLYALVLTPTRELAFQISE
QFEALGSSIGVKCAVIVGGIDMMAQSLALAKKPHIIIATPGRLIDHLENT
KGFSLRSLKYLIMDEADRILNMDFEEEVDKILKIIPKERHTYLFSATMTK
KVAKLQRASLQNPVKVEVSTKFQTVEKLLQSYIFIPQKYKDCYLVSIMNE
LAGNSFMIFCGTCNNVQRVCLLLRHLGFQAIPLHGQMSQSKRLGALNKYK
SKSRDILIATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRS
GRSITFVTQYDVELYQRIEQLIGKKLPQHPIVEEEVMLLVQRVNEAQRHA
RMEMKELHDSKRKCIDVDDEDTASNTMQHFSKKMKYDKEQKRKAKHGGGE
GGPRGGGGGGGHKGKFKKKKAY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029220XLOC_029220Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00045719TCONS_00045719Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 33..231
e-value: 3.4E-57
score: 206.0
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 45..216
score: 33.137
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 267..348
e-value: 1.1E-31
score: 121.2
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 243..348
e-value: 1.7E-29
score: 102.3
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 227..387
score: 23.261
NoneNo IPR availableGENE3D3.40.50.300coord: 2..231
e-value: 1.8E-59
score: 200.6
NoneNo IPR availableGENE3D3.40.50.300coord: 232..462
e-value: 1.3E-43
score: 148.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 425..472
NoneNo IPR availableCDDcd00268DEADccoord: 16..217
e-value: 3.90965E-93
score: 282.451
NoneNo IPR availableCDDcd00079HELICccoord: 227..356
e-value: 1.75049E-35
score: 127.739
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 39..205
e-value: 4.3E-47
score: 160.1
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 162..170
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 14..42
score: 9.857
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 83..370

Blast
[Close]
BLAST of TCONS_00045719-protein vs. Swiss-Prot (Human)
Match: DDX47 (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 0.000e+0
Identity = 321/438 (73.29%), Postives = 377/438 (86.07%), Query Frame = 0 
Query:    9 KDEVKKKFSDLGINEILCEACDRLGWKFPSKIQCESIPVSLEGKDVIALAETGSGKTGAFALPVLHTLLDNPQRLYALVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMAQSLALAKKPHIIIATPGRLIDHLENTKGFSLRSLKYLIMDEADRILNMDFEEEVDKILKIIPKERHTYLFSATMTKKVAKLQRASLQNPVKVEVSTKFQTVEKLLQSYIFIPQKYKDCYLVSIMNELAGNSFMIFCGTCNNVQRVCLLLRHLGFQAIPLHGQMSQSKRLGALNKYKSKSRDILIATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLIGKKLPQHPIVEEEVMLLVQRVNEAQRHARMEMKELHDSKRKCI-DVDDEDTASNTMQHFSKKMKYDKEQKRKAK 445
            ++E  K F DLG+ ++LCEACD+LGW  P+KIQ E+IP++L+G+D+I LAETGSGKTGAFALP+L+ LL+ PQRL+ALVLTPTRELAFQISEQFEALGSSIGV+ AVIVGGID M+QSLALAKKPHIIIATPGRLIDHLENTKGF+LR+LKYL+MDEADRILNMDFE EVDKILK+IP++R T+LFSATMTKKV KLQRA+L+NPVK  VS+K+QTVEKL Q YIFIP K+KD YLV I+NELAGNSFMIFC TCNN QR  LLLR+LGF AIPLHGQMSQSKRLG+LNK+K+K+R IL+ATDVASRGLDIPHVD+V+NFDIPTHSKDYIHRVGRTARAGRSG++ITFVTQYDVEL+QRIE LIGKKLP  P  ++EVM+L +RV EAQR ARME++E  + K++   D  D D     +     K+   K +KRK +
Sbjct:   19 EEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAI-GVRNKVAGGKMKKRKGR 455
The following BLAST results are available for this feature:
BLAST of TCONS_00045719-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX470.000e+073.29Probable ATP-dependent RNA helicase DDX47 OS=Homo ... [more]
back to top