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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045719 ID=TCONS_00045719|Name=TCONS_00045719|organism=Clytia hemisphaerica|type=transcript|length=2301bpRun BLAST on NCBI protein sequence of TCONS_00045719-protein >TCONS_00045719-protein ID=TCONS_00045719-protein|Name=TCONS_00045719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp MADEARGEKDEVKKKFSDLGINEILCEACDRLGWKFPSKIQCESIPVSLERun BLAST on NCBI transcript from alignment at scaffold_100:154070..173541- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045719 ID=TCONS_00045719|Name=TCONS_00045719|organism=Clytia hemisphaerica|type=transcript|length=19472bp|location=Sequence derived from alignment at scaffold_100:154070..173541- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_100:154070..173541- >TCONS_00045719 ID=TCONS_00045719|Name=TCONS_00045719|organism=Clytia hemisphaerica|type=CDS|length=19866bp|location=Sequence derived from alignment at scaffold_100:154070..173541- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045719 vs. Swiss-Prot (Human)
Match: DDX47 (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1) HSP 1 Score: 645.58 bits (1664), Expect = 0.000e+0 Identity = 316/416 (75.96%), Postives = 371/416 (89.18%), Query Frame = 3
Query: 528 KDEVKKKFSDLGINEILCEACDRLGWKFPSKIQCESIPVSLEGKDVIALAETGSGKTGAFALPVLHTLLDNPQRLYALVLTPTRELAFQISEQFEALGSSIGVKCAVIVGGIDMMAQSLALAKKPHIIIATPGRLIDHLENTKGFSLRSLKYLIMDEADRILNMDFEEEVDKILKIIPKERHTYLFSATMTKKVAKLQRASLQNPVKVEVSTKFQTVEKLLQSYIFIPQKYKDCYLVSIMNELAGNSFMIFCGTCNNVQRVCLLLRHLGFQAIPLHGQMSQSKRLGALNKYKSKSRDILIATDVASRGLDIPHVDIVINFDIPTHSKDYIHXXXXXXXXXXXXXXITFVTQYDVELYQRIEQLIGKKLPQHPIVEEEVMLLVQRVNEAQRHARMEMKELHDSKRKCID--VDDEDT 1769
++E K F DLG+ ++LCEACD+LGW P+KIQ E+IP++L+G+D+I LAETGSGKTGAFALP+L+ LL+ PQRL+ALVLTPTRELAFQISEQFEALGSSIGV+ AVIVGGID M+QSLALAKKPHIIIATPGRLIDHLENTKGF+LR+LKYL+MDEADRILNMDFE EVDKILK+IP++R T+LFSATMTKKV KLQRA+L+NPVK VS+K+QTVEKL Q YIFIP K+KD YLV I+NELAGNSFMIFC TCNN QR LLLR+LGF AIPLHGQMSQSKRLG+LNK+K+K+R IL+ATDVASRGLDIPHVD+V+NFDIPTHSKDYIHRVGRTARAGRSG++ITFVTQYDVEL+QRIE LIGKKLP P ++EVM+L +RV EAQR ARME++E + K++ + D++DT
Sbjct: 19 EEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDT 434 The following BLAST results are available for this feature:
BLAST of TCONS_00045719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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