TCONS_00021656-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021656-protein
Unique NameTCONS_00021656-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length209

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021656-protein ID=TCONS_00021656-protein|Name=TCONS_00021656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
CHLNNVALAAVMAIEKYQLTRILILDWDVHYGNATHKMFDDDPRVLYFSL
HRYNYTKYWPHQTEANYDHVGTGSGKGYNVHVAWNKSKIKSSAYLYAFDN
LLIPILKRFDPELVLVSAGFDAGINDPLGKCKVTPYGYAQMTKKLMDFAG
GKVAVILEGGYNLDTISTSMASCVSTLLGDEVKPDPELDVSDTQPSDSAL
KSISNTFFA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012145XLOC_012145Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021656TCONS_00021656Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000286His_deacetylse
IPR023801His_deacetylse_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000286Histone deacetylase superfamilyPRINTSPR01270HDASUPERcoord: 21..36
score: 46.75
coord: 111..121
score: 48.08
IPR023801Histone deacetylase domainPFAMPF00850Hist_deacetylcoord: 1..177
e-value: 8.9E-53
score: 179.7
IPR023801Histone deacetylase domainGENE3D3.40.800.20coord: 1..208
e-value: 1.1E-69
score: 234.6
NoneNo IPR availableSUPERFAMILY52768Arginase/deacetylasecoord: 1..189

Blast
[Close]
BLAST of TCONS_00021656-protein vs. Swiss-Prot (Human)
Match: HDA10 (Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.984e-62
Identity = 97/205 (47.32%), Postives = 137/205 (66.83%), Query Frame = 0 
Query:    1 CHLNNVALAAVMAIEKYQLTRILILDWDVHYGNATHKMFDDDPRVLYFSLHRYNYTKYWPHQTEANYDHVGTGSGKGYNVHVAWNKSKIKSSAYLYAFDNLLIPILKRFDPELVLVSAGFDAGINDPLGKCKVTPYGYAQMTKKLMDFAGGKVAVILEGGYNLDTISTSMASCVSTLLGDEVKPDPELDVSDTQPSDSALKSISN 205
            C  NNVA+AA  A +K+ L RIL++DWDVH+G     +F+DDP VLYFS HRY + ++WP   E++ D VG G G G+ V++ WN+  + ++ Y+ AF +LL+P+   FDPELVLVSAGFD+ I DP G+ + TP  +A +T+ L   AGG+V  +LEGGY+L++++ S+   V TLLGD   P P L      P  SAL+SI +
Sbjct:  145 CVFNNVAIAAAHAKQKHGLHRILVVDWDVHHGQGIQYLFEDDPSVLYFSWHRYEHGRFWPFLRESDADAVGRGQGLGFTVNLPWNQVGMGNADYVAAFLHLLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRVCAVLEGGYHLESLAESVCMTVQTLLGD---PAPPLS-GPMAPCQSALESIQS 345
The following BLAST results are available for this feature:
BLAST of TCONS_00021656-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDA104.984e-6247.32Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 P... [more]
back to top