TCONS_00021656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021656
Unique NameTCONS_00021656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021656 ID=TCONS_00021656|Name=TCONS_00021656|organism=Clytia hemisphaerica|type=transcript|length=630bp
TTTGTCATTTAAATAATGTGGCACTAGCTGCAGTGATGGCTATTGAAAAG
TATCAACTGACaagaattttgattttagacTGGGATGTACACTATGGTAA
TGCCACACACAAAATGTTTGATGATGATCCAAGAGTTTTGTACTTTTCTT
TGCACAGATACAACTATACAAAATATTGGCCACACCAGACTGAAGCTAAT
TATGATCATGTTGGAACAGGGTCTGGTAAAGGCTATAATGTTCATGTAGC
CTGgaataaaagtaaaattaagTCTAGTGCTTATTTATATGCCTTTGATA
ACCTTTTgataccaattcttaaaagaTTTGATCCAGAGTTAGTTCTTGTA
TCTGCAGGATTTGATGCTGGAATTAATGATCCGTTAGGAAAATGTAAAGT
TACTCCCTATGGATATGCTCAAATGACTAAAAAATTAATGGACTTTGCTG
GTGGTAAAGTTGCAGTTATTCTAGAAGGTGGTTATAATCTTGATACCATT
TCAACATCAATGGCAAGCTGTGTGTCTACCCTTCTTGGTGACGAAGTAAA
ACCAGATCCAGAATTAGATGTTAGTGATACGCAACCTTCTGATAGTGCAT
TGAAGTCCATTAGTAATACCTTCTTTGCTC
Run BLAST on NCBI

protein sequence of TCONS_00021656-protein

>TCONS_00021656-protein ID=TCONS_00021656-protein|Name=TCONS_00021656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
CHLNNVALAAVMAIEKYQLTRILILDWDVHYGNATHKMFDDDPRVLYFSL
HRYNYTKYWPHQTEANYDHVGTGSGKGYNVHVAWNKSKIKSSAYLYAFDN
LLIPILKRFDPELVLVSAGFDAGINDPLGKCKVTPYGYAQMTKKLMDFAG
GKVAVILEGGYNLDTISTSMASCVSTLLGDEVKPDPELDVSDTQPSDSAL
KSISNTFFA
Run BLAST on NCBI

transcript from alignment at sc0000391:24804..25433

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021656 ID=TCONS_00021656|Name=TCONS_00021656|organism=Clytia hemisphaerica|type=transcript|length=630bp|location=Sequence derived from alignment at sc0000391:24804..25433 (Clytia hemisphaerica)
GAGCAAAGAAGGTATTACTAATGGACTTCAATGCACTATCAGAAGGTTGC
GTATCACTAACATCTAATTCTGGATCTGGTTTTACTTCGTCACCAAGAAG
GGTAGACACACAGCTTGCCATTGATGTTGAAATGGTATCAAGATTATAAC
CACCTTCTAGAATAACTGCAACTTTACCACCAGCAAAGTCCATTAATTTT
TTAGTCATTTGAGCATATCCATAGGGAGTAACTTTACATTTTCCTAACGG
ATCATTAATTCCAGCATCAAATCCTGCAGATACAAGAACTAACTCTGGAT
CAAAtcttttaagaattggtatcAAAAGGTTATCAAAGGCATATAAATAA
GCACTAGActtaattttacttttattcCAGGCTACATGAACATTATAGCC
TTTACCAGACCCTGTTCCAACATGATCATAATTAGCTTCAGTCTGGTGTG
GCCAATATTTTGTATAGTTGTATCTGTGCAAAGAAAAGTACAAAACTCTT
GGATCATCATCAAACATTTTGTGTGTGGCATTACCATAGTGTACATCCCA
gtctaaaatcaaaattcttGTCAGTTGATACTTTTCAATAGCCATCACTG
CAGCTAGTGCCACATTATTTAAATGACAAA

Coding sequence (CDS) from alignment at sc0000391:24804..25433

>TCONS_00021656 ID=TCONS_00021656|Name=TCONS_00021656|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0000391:24804..25433 (Clytia hemisphaerica)
AGCAAAGAAGGTATTACTAATGGACTTCAATGCACTATCAGAAGGTTGCG
TATCACTAACATCTAATTCTGGATCTGGTTTTACTTCGTCACCAAGAAGG
GTAGACACACAGCTTGCCATTGATGTTGAAATGGTATCAAGATTATAACC
ACCTTCTAGAATAACTGCAACTTTACCACCAGCAAAGTCCATTAATTTTT
TAGTCATTTGAGCATATCCATAGGGAGTAACTTTACATTTTCCTAACGGA
TCATTAATTCCAGCATCAAATCCTGCAGATACAAGAACTAACTCTGGATC
AAAtcttttaagaattggtatcAAAAGGTTATCAAAGGCATATAAATAAG
CACTAGActtaattttacttttattcCAGGCTACATGAACATTATAGCCT
TTACCAGACCCTGTTCCAACATGATCATAATTAGCTTCAGTCTGGTGTGG
CCAATATTTTGTATAGTTGTATCTGTGCAAAGAAAAGTACAAAACTCTTG
GATCATCATCAAACATTTTGTGTGTGGCATTACCATAGTGTACATCCCAg
tctaaaatcaaaattcttGTCAGTTGATACTTTTCAATAGCCATCACTGC
AGCTAGTGCCACATTATTTAAATGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012145XLOC_012145Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021656-proteinTCONS_00021656-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021656-exon-sc0000391-1491911889:24804..25433TCONS_00021656-exon-sc0000391-1491911889:24804..25433Clytia hemisphaericaexon
TCONS_00021656-exon-sc0000391-1510915933:24804..25433TCONS_00021656-exon-sc0000391-1510915933:24804..25433Clytia hemisphaericaexon
TCONS_00021656-exon-sc0000391-1575043694:24804..25433TCONS_00021656-exon-sc0000391-1575043694:24804..25433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000391supercontigsc0000391:24804..25433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.51051	1.24737	1.12376	1.20632	3.97751	2.60427	2.81691	3.65145	0.710129	2.05885	1.1099	0.481195	1.00971	0.601052	0.669919	0.718926	0.569352	1.62102	0.179162	0.18748	0.836907	1.07303	3.07954	2.97325	2.26193	1.29198	0.346653	0.246639	1.24891	1.58149
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000286His_deacetylse
IPR023801His_deacetylse_dom
Blast
[Close]
BLAST of TCONS_00021656 vs. Swiss-Prot (Human)
Match: HDA10 (Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.783e-61
Identity = 97/205 (47.32%), Postives = 137/205 (66.83%), Query Frame = 3 
Query:    3 CHLNNVALAAVMAIEKYQLTRILILDWDVHYGNATHKMFDDDPRVLYFSLHRYNYTKYWPHQTEANYDHVGTGSGKGYNVHVAWNKSKIKSSAYLYAFDNLLIPILKRFDPELVLVSAGFDAGINDPLGKCKVTPYGYAQMTKKLMDFAGGKVAVILEGGYNLDTISTSMASCVSTLLGDEVKPDPELDVSDTQPSDSALKSISN 617
            C  NNVA+AA  A +K+ L RIL++DWDVH+G     +F+DDP VLYFS HRY + ++WP   E++ D VG G G G+ V++ WN+  + ++ Y+ AF +LL+P+   FDPELVLVSAGFD+ I DP G+ + TP  +A +T+ L   AGG+V  +LEGGY+L++++ S+   V TLLGD   P P L      P  SAL+SI +
Sbjct:  145 CVFNNVAIAAAHAKQKHGLHRILVVDWDVHHGQGIQYLFEDDPSVLYFSWHRYEHGRFWPFLRESDADAVGRGQGLGFTVNLPWNQVGMGNADYVAAFLHLLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRVCAVLEGGYHLESLAESVCMTVQTLLGD---PAPPLS-GPMAPCQSALESIQS 345
The following BLAST results are available for this feature:
BLAST of TCONS_00021656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDA105.783e-6147.32Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 P... [more]
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