TCONS_00021155-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021155-protein
Unique NameTCONS_00021155-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021155-protein ID=TCONS_00021155-protein|Name=TCONS_00021155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MTTNIEKSLSLFRESADNHGFLVYSRGGSIPYLTSDNFETIFKDEHTLWH
IPVSTIYEQPGESVIKKYGKSFMEFANLANCTLMLNVNDSAQPKEDLYKY
NEEKAVSVWAPSGRQRISPDEYMNLLKSFGIGICLPPSDQIPGGAAKKRC
QKSCDRSVRFLDRCLEIRKEQNLDIPVFGVLEGGDSIGYREKCIKEVIKR
DIDGYVFSGFDVIGPDWKDVMKATLEFITDKKLKIMFGLFTPLEVIEAVE
FGVDLFDSVICCHVAESGCALNFKFRIQYEAAEQVVSIPSKRSKQDKNSN
KKDLSLYEMDLHDDIYTEDMTPLVEGCTCYCCTRYTRAYLHHLLVTKEML
SEVLLMIHNLHHWKNFFKELLVHKRNNSLEQLKKIFE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011855XLOC_011855Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021155TCONS_00021155Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002616tRNA_ribo_trans-like
IPR028592QTRTD1
Vocabulary: Molecular Function
TermDefinition
GO:0016763transferase activity, transferring pentosyl groups
GO:0008479queuine tRNA-ribosyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006400tRNA modification
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006400 tRNA modification
molecular_function GO:0008479 queuine tRNA-ribosyltransferase activity
molecular_function GO:0016763 transferase activity, transferring pentosyl groups
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 376..387
IPR002616tRNA-guanine(15) transglycosylase-likePFAMPF01702TGTcoord: 121..384
e-value: 3.7E-52
score: 177.2
IPR002616tRNA-guanine(15) transglycosylase-likeGENE3D3.20.20.105coord: 9..387
e-value: 5.2E-79
score: 265.2
IPR002616tRNA-guanine(15) transglycosylase-likeTIGRFAMTIGR00449TIGR00449coord: 115..384
e-value: 6.3E-33
score: 112.1
IPR002616tRNA-guanine(15) transglycosylase-likeSUPERFAMILY51713tRNA-guanine transglycosylasecoord: 309..386
coord: 21..276
IPR028592Queuine tRNA-ribosyltransferase accessory subunit QTRTD1HAMAPMF_03043QTRT2coord: 14..385
score: 30.16

Blast
[Close]
BLAST of TCONS_00021155-protein vs. Swiss-Prot (Human)
Match: QTRT2 (Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Homo sapiens GN=QTRT2 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.637e-58
Identity = 122/390 (31.28%), Postives = 202/390 (51.79%), Query Frame = 0 
Query:   15 SADNHGFLVYSRGGSIPYLTSDNFETIFKDEHTLWHIPVSTIYEQPGESVIKKYGKSFMEFANLANCTLMLNVNDSAQPKEDLYKYNEEKAVSVWAPSGRQRISPDEYMNLLKSFGIG--ICLPPSD-QIPGGAAKKRCQKSCDRSVRFLDRCLEIRKEQNL--DIPVFGVLEGGDSIGYREKCIKEVIKRDIDGYVFSGFD----VIGPDWKDVMKATLEFITDKKLKIMFGLFTPLEVIEAVEFGVDLFDSVICCHVAESGCALNFKFR---------IQYEAAEQVVSIPSKRSKQDKNSNKKDLSLYEMDLHDDIYTEDMTPLVEGCTCYCCTRYTRAYLHHLLVTKEMLSEVLLMIHNLHHWKNFFKELLVHKRNNSLEQLKKIF 386
            + D  G L+Y++ GS P+LT      I      +  + +S++ E     V+ +Y +   +F  +    L  +++D   P    Y  N  K+VSVW+ +GR  ++  ++M + K+       CL   +       + KR +KS DRS+ FLD CL +++E  +     + GV+EGGD +  R +  +E  KR + G++  GF      +    + +   T E   DK  +++ G+  P EV+E +E GVDLF+S     V E GCAL F F          +Q    ++ +    +  K +     ++++ +E++L +  Y ED  PLV GC+CYCC  +TRAY+HHLLVT E+L+ VLLM+HN  H+  FF  +    +++ L QLK++ 
Sbjct:   27 TMDIPGCLLYTKTGSAPHLTHHTLHNIHGVP-AMAQLTLSSLAEH--HEVLTEYKEGVGKFIGMPESLLYCSLHDPVSPCPAGYVTN--KSVSVWSVAGRVEMTVSKFMAIQKALQPDWFQCLSDGEVSCKEATSIKRVRKSVDRSLLFLDNCLRLQEESEVLQKSVIIGVIEGGDVMEERLRSARETAKRPVGGFLLDGFQGNPTTLEARLRLLSSVTAELPEDKP-RLISGVSRPDEVLECIERGVDLFESFFPYQVTERGCALTFSFDYQPNPEETLLQQNGTQEEIKCMDQIKKIETTGCNQEITSFEINLKEKKYQEDFNPLVRGCSCYCCKNHTRAYIHHLLVTNELLAGVLLMMHNFEHYFGFFHYIREALKSDKLAQLKELI 410
The following BLAST results are available for this feature:
BLAST of TCONS_00021155-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
QTRT21.637e-5831.28Queuine tRNA-ribosyltransferase accessory subunit ... [more]
back to top