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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021155 ID=TCONS_00021155|Name=TCONS_00021155|organism=Clytia hemisphaerica|type=transcript|length=2024bp
aaattttttctATACTTCGCATAATAAACCCTTACAAAAAGATATTACTC
TTGTACCAATACTTGTACCCCCCGTTTTAAGATTTTTGACGAGGTGTTTT
TTGACAAACCTAAAAactctattttttttcttccctcaagctaaaaaggt
tatGGGTTTGGGCAATCAAGTCAACAATCaacaaaaagctggtgttttcc
gtAAATCTGAGAATCACTACTGGAAAGCtaaaaaatggttggatttggct
gaaatttgcgcACTTGATCGTTGGGTGAATCCCTGgaggtcttttttttt
taatttccattttcaagggTGTGGTCACTTCTTTTAGCACCAATACAAAG
CTGAAAACTTTTGGGAGGGCTGGAGacaattttgcacacttgatccttta
CCAAATCCTTGCAGGTGtttttttatactttcaaaatttgtacTTTCAAG
GCATATTCGAACCTGGTCAGTTTTTCATTTCTGGAACACTATCCAGGATT
TCCAGTCTCTTCTTTTAATTTATTAGTTTGAGAATAAGTTTCTTTTAATA
TTGTTTCTagataaaaaaattgcaaaaagtaATGACGACAAATATTGAAA
AGTCGTTATCATTATTTAGGGAATCAGCTGATAATCATGGTTTCTTGGTT
TACTCACGTGGTGGCTCAATACCATATTTAACATCAGATAACtttgaaac
aattttcaaagatgAACACACACTTTGGCATATACCAGTATCAACCATTT
ATGAACAACCAGGGGAATCAGTTATCAAGAAATATGGTAAAAGTTTTATG
GAGTTTGCAAACCTGGCGAATTGTACCTTAATGTTAAATGTGAATGATAG
TGCACAGCCAAAAGAGGATCTTTACAAGTATAACGAAGAGAAGGCGGTAT
CTGTTTGGGCTCCAAGTGGTCgacaaagaatctctccagatGAGTATATG
AATCTTTTAAAGTCATTTGGTATTGGCATCTGTTTACCCCCATCTGATCA
AATACCAGGTGGGGCTGCTAAGAAAAGATGTCAAAAATCATGTGACAGGT
CTGTTCGATTCCTGGACCGTTGTCTTGAAATTCGCAAAGAACAGAATCTA
GACATTCCTGTATTTGGTGTGCTTGAAGGTGGAGATAGTATTGGATATCG
TGAAAAATGTATAAAGGAAGTTATCAAGAGGGATATAGATGGGTATGTAT
TTAGTGGGTTTGATGTTATTGGGCCAGATTGGAAAGATGTCATGAAGGCT
ACTCTTGAATTTATCACAGATAAAAAGTTGAAGATCATGTTTGGTTTGTT
TACACCGTTGGAGGTGATTGAAGCTGTTGAGTTTGGTGTGGATTTGTTTG
ATTCTGTCATTTGCTGTCATGTAGCTGAAAGTGGATGTGCGTTGAATTTT
AAGTTTAGAATTCAATATGAAGCAGCTGAGCAAGTTGTGTCAATTCCAag
taaaagatcaaaacaagataaaaattcaaacaaGAAGGATCTTTCTTTGT
ATGAAATGGATCTACATGATGATATTTATACAGAAGACATGACTCCTTTG
GTAGAAGGATGCACTTGTTACTGTTGCACTCGTTACACCAGAGCTTATTT
ACACCATTTGTTGGTGACCAAAGAAATGCTCTCTGAAGTCTTGTTGATGA
TTCATAATCTGCATCAttggaaaaatttctttaaagaattgTTAGTCCAC
AAGCGTAATAACTCTTTAGAgcaattgaaaaagatttttgaataaAGCCA
CATATACTTTAAAATTGAAAGATGGATTTGTTAATTTTATATGTATTTTA
TTATAGAGGGAGGAGTGGGatttttgaaagctatttttatCAAACATGTT
ATCCTTATTATACAACTCGAATCTGTATATCTTTGCATTCGTGTTCTTGT
TCCAAAAAACTTTGGGGTCTTGGTATGGCTGAACTCTTTCAGACTTTACC
TGATTATCtggttaaattttttcaaatattttagatttttttgttcTGGG
acattatattttgcaaaagcagag Run BLAST on NCBI protein sequence of TCONS_00021155-protein >TCONS_00021155-protein ID=TCONS_00021155-protein|Name=TCONS_00021155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MTTNIEKSLSLFRESADNHGFLVYSRGGSIPYLTSDNFETIFKDEHTLWH
IPVSTIYEQPGESVIKKYGKSFMEFANLANCTLMLNVNDSAQPKEDLYKY
NEEKAVSVWAPSGRQRISPDEYMNLLKSFGIGICLPPSDQIPGGAAKKRC
QKSCDRSVRFLDRCLEIRKEQNLDIPVFGVLEGGDSIGYREKCIKEVIKR
DIDGYVFSGFDVIGPDWKDVMKATLEFITDKKLKIMFGLFTPLEVIEAVE
FGVDLFDSVICCHVAESGCALNFKFRIQYEAAEQVVSIPSKRSKQDKNSN
KKDLSLYEMDLHDDIYTEDMTPLVEGCTCYCCTRYTRAYLHHLLVTKEML
SEVLLMIHNLHHWKNFFKELLVHKRNNSLEQLKKIFE Run BLAST on NCBI transcript from alignment at sc0000378:291011..293034 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021155 ID=TCONS_00021155|Name=TCONS_00021155|organism=Clytia hemisphaerica|type=transcript|length=2024bp|location=Sequence derived from alignment at sc0000378:291011..293034 (Clytia hemisphaerica)
ctctgcttttgcaaaatataatgtCCCAgaacaaaaaaatctaaaatatt
tgaaaaaatttaaccaGATAATCAGGTAAAGTCTGAAAGAGTTCAGCCAT
ACCAAGACCCCAAAGTTTTTTGGAACAAGAACACGAATGCAAAGATATAC
AGATTCGAGTTGTATAATAAGGATAACATGTTTGataaaaatagctttca
aaaatCCCACTCCTCCCTCTATAATAAAATACATATAAAATTAACAAATC
CATCTTTCAATTTTAAAGTATATGTGGCTttattcaaaaatctttttcaa
ttgcTCTAAAGAGTTATTACGCTTGTGGACTAAcaattctttaaagaaat
ttttccaaTGATGCAGATTATGAATCATCAACAAGACTTCAGAGAGCATT
TCTTTGGTCACCAACAAATGGTGTAAATAAGCTCTGGTGTAACGAGTGCA
ACAGTAACAAGTGCATCCTTCTACCAAAGGAGTCATGTCTTCTGTATAAA
TATCATCATGTAGATCCATTTCATACAAAGAAAGATCCTTCttgtttgaa
tttttatcttgttttgatcttttactTGGAATTGACACAACTTGCTCAGC
TGCTTCATATTGAATTCTAAACTTAAAATTCAACGCACATCCACTTTCAG
CTACATGACAGCAAATGACAGAATCAAACAAATCCACACCAAACTCAACA
GCTTCAATCACCTCCAACGGTGTAAACAAACCAAACATGATCTTCAACTT
TTTATCTGTGATAAATTCAAGAGTAGCCTTCATGACATCTTTCCAATCTG
GCCCAATAACATCAAACCCACTAAATACATACCCATCTATATCCCTCTTG
ATAACTTCCTTTATACATTTTTCACGATATCCAATACTATCTCCACCTTC
AAGCACACCAAATACAGGAATGTCTAGATTCTGTTCTTTGCGAATTTCAA
GACAACGGTCCAGGAATCGAACAGACCTGTCACATGATTTTTGACATCTT
TTCTTAGCAGCCCCACCTGGTATTTGATCAGATGGGGGTAAACAGATGCC
AATACCAAATGACTTTAAAAGATTCATATACTCatctggagagattcttt
gtcGACCACTTGGAGCCCAAACAGATACCGCCTTCTCTTCGTTATACTTG
TAAAGATCCTCTTTTGGCTGTGCACTATCATTCACATTTAACATTAAGGT
ACAATTCGCCAGGTTTGCAAACTCCATAAAACTTTTACCATATTTCTTGA
TAACTGATTCCCCTGGTTGTTCATAAATGGTTGATACTGGTATATGCCAA
AGTGTGTGTTcatctttgaaaattgtttcaaaGTTATCTGATGTTAAATA
TGGTATTGAGCCACCACGTGAGTAAACCAAGAAACCATGATTATCAGCTG
ATTCCCTAAATAATGATAACGACTTTTCAATATTTGTCGTCATtactttt
tgcaatttttttatctAGAAACAATATTAAAAGAAACTTATTCTCAAACT
AATAAATTAAAAGAAGAGACTGGAAATCCTGGATAGTGTTCCAGAAATGA
AAAACTGACCAGGTTCGAATATGCCTTGAAAgtacaaattttgaaagtat
aaaaaaaCACCTGCAAGGATTTGGtaaaggatcaagtgtgcaaaattgtC
TCCAGCCCTCCCAAAAGTTTTCAGCTTTGTATTGGTGCTAAAAGAAGTGA
CCACAcccttgaaaatggaaattaaaaaaaaaagacctcCAGGGATTCAC
CCAACGATCAAGTgcgcaaatttcagccaaatccaaccattttttaGCTT
TCCAGTAGTGATTCTCAGATTTacggaaaacaccagctttttgttGATTG
TTGACTTGATTGCCCAAACCCataacctttttagcttgagggaagaaaaa
aaatagagtTTTTAGGTTTGTCAAAAAACACCTCGTCAAAAATCTTAAAA
CGGGGGGTACAAGTATTGGTACAAGAGTAATATCTTTTTGTAAGGGTTTA
TTATGCGAAGTATagaaaaaattt Coding sequence (CDS) from alignment at sc0000378:291011..293034 >TCONS_00021155 ID=TCONS_00021155|Name=TCONS_00021155|organism=Clytia hemisphaerica|type=CDS|length=1164bp|location=Sequence derived from alignment at sc0000378:291011..293034 (Clytia hemisphaerica)
ttattcaaaaatctttttcaattgcTCTAAAGAGTTATTACGCTTGTGGA
CTAAcaattctttaaagaaatttttccaaTGATGCAGATTATGAATCATC
AACAAGACTTCAGAGAGCATTTCTTTGGTCACCAACAAATGGTGTAAATA
AGCTCTGGTGTAACGAGTGCAACAGTAACAAGTGCATCCTTCTACCAAAG
GAGTCATGTCTTCTGTATAAATATCATCATGTAGATCCATTTCATACAAA
GAAAGATCCTTCttgtttgaatttttatcttgttttgatcttttactTGG
AATTGACACAACTTGCTCAGCTGCTTCATATTGAATTCTAAACTTAAAAT
TCAACGCACATCCACTTTCAGCTACATGACAGCAAATGACAGAATCAAAC
AAATCCACACCAAACTCAACAGCTTCAATCACCTCCAACGGTGTAAACAA
ACCAAACATGATCTTCAACTTTTTATCTGTGATAAATTCAAGAGTAGCCT
TCATGACATCTTTCCAATCTGGCCCAATAACATCAAACCCACTAAATACA
TACCCATCTATATCCCTCTTGATAACTTCCTTTATACATTTTTCACGATA
TCCAATACTATCTCCACCTTCAAGCACACCAAATACAGGAATGTCTAGAT
TCTGTTCTTTGCGAATTTCAAGACAACGGTCCAGGAATCGAACAGACCTG
TCACATGATTTTTGACATCTTTTCTTAGCAGCCCCACCTGGTATTTGATC
AGATGGGGGTAAACAGATGCCAATACCAAATGACTTTAAAAGATTCATAT
ACTCatctggagagattctttgtcGACCACTTGGAGCCCAAACAGATACC
GCCTTCTCTTCGTTATACTTGTAAAGATCCTCTTTTGGCTGTGCACTATC
ATTCACATTTAACATTAAGGTACAATTCGCCAGGTTTGCAAACTCCATAA
AACTTTTACCATATTTCTTGATAACTGATTCCCCTGGTTGTTCATAAATG
GTTGATACTGGTATATGCCAAAGTGTGTGTTcatctttgaaaattgtttc
aaaGTTATCTGATGTTAAATATGGTATTGAGCCACCACGTGAGTAAACCA
AGAAACCATGATTATCAGCTGATTCCCTAAATAATGATAACGACTTTTCA
ATATTTGTCGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021155-exon-sc0000378-1491911889:291011..293034 | TCONS_00021155-exon-sc0000378-1491911889:291011..293034 | Clytia hemisphaerica | exon |
| TCONS_00021155-exon-sc0000378-1510915933:291011..293034 | TCONS_00021155-exon-sc0000378-1510915933:291011..293034 | Clytia hemisphaerica | exon |
| TCONS_00021155-exon-sc0000378-1575043694:291011..293034 | TCONS_00021155-exon-sc0000378-1575043694:291011..293034 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000378 | supercontig | sc0000378:291011..293034 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016763 | transferase activity, transferring pentosyl groups |
| GO:0008479 | queuine tRNA-ribosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006400 | tRNA modification |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006400 |
tRNA modification |
| molecular_function |
GO:0008479 |
queuine tRNA-ribosyltransferase activity |
| molecular_function |
GO:0016763 |
transferase activity, transferring pentosyl groups |
Blast
BLAST of TCONS_00021155 vs. Swiss-Prot (Human)
Match: QTRT2 (Queuine tRNA-ribosyltransferase accessory subunit 2 OS=Homo sapiens GN=QTRT2 PE=1 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 4.988e-46 Identity = 122/390 (31.28%), Postives = 202/390 (51.79%), Query Frame = 3
Query: 624 SADNHGFLVYSRGGSIPYLTSDNFETIFKDEHTLWHIPVSTIYEQPGESVIKKYGKSFMEFANLANCTLMLNVNDSAQPKEDLYKYNEEKAVSVWAPSGRQRISPDEYMNLLKSFGIG--ICLPPSD-QIPGGAAKKRCQKSCDRSVRFLDRCLEIRKEQNL--DIPVFGVLEGGDSIGYREKCIKEVIKRDIDGYVFSGFD----VIGPDWKDVMKATLEFITDKKLKIMFGLFTPLEVIEAVEFGVDLFDSVICCHVAESGCALNFKFR---------IQYEAAEQVVSIPSKRSKQDKNSNKKDLSLYEMDLHDDIYTEDMTPLVEGXXXXXXXXXXXAYLHHLLVTKEMLSEVLLMIHNLHHWKNFFKELLVHKRNNSLEQLKKIF 1739
+ D G L+Y++ GS P+LT I + + +S++ E V+ +Y + +F + L +++D P Y N K+VSVW+ +GR ++ ++M + K+ CL + + KR +KS DRS+ FLD CL +++E + + GV+EGGD + R + +E KR + G++ GF + + + T E DK +++ G+ P EV+E +E GVDLF+S V E GCAL F F +Q ++ + + K + ++++ +E++L + Y ED PLV GC+CYCC +TRAY+HHLLVT E+L+ VLLM+HN H+ FF + +++ L QLK++
Sbjct: 27 TMDIPGCLLYTKTGSAPHLTHHTLHNIHGVP-AMAQLTLSSLAEH--HEVLTEYKEGVGKFIGMPESLLYCSLHDPVSPCPAGYVTN--KSVSVWSVAGRVEMTVSKFMAIQKALQPDWFQCLSDGEVSCKEATSIKRVRKSVDRSLLFLDNCLRLQEESEVLQKSVIIGVIEGGDVMEERLRSARETAKRPVGGFLLDGFQGNPTTLEARLRLLSSVTAELPEDKP-RLISGVSRPDEVLECIERGVDLFESFFPYQVTERGCALTFSFDYQPNPEETLLQQNGTQEEIKCMDQIKKIETTGCNQEITSFEINLKEKKYQEDFNPLVRGCSCYCCKNHTRAYIHHLLVTNELLAGVLLMMHNFEHYFGFFHYIREALKSDKLAQLKELI 410
The following BLAST results are available for this feature:
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