TCONS_00020026-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020026-protein
Unique NameTCONS_00020026-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020026-protein ID=TCONS_00020026-protein|Name=TCONS_00020026-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
MQRAVNTVQSIGINYKVIQIELLDDSDLSRNIFKKTKTKEILENVFQIID
IIEKEYFGLYFKNLQTDERMWLKPSGTVWSQIVKVMEPPYQLYFGVKYFP
FDPLSLQEDVTLYMMYLQLRRDIKDGRCICSDHERAEMLAHILQAEAGDH
GPSSAHKYRHFFVNLQQTTPELERAVLDIYTHMGGMDPPTCEMKLMEKAL
TVTYYSQEIYHVRSDAQPGLKRLTLTLGPIGIGLYQNSVKLDIFNWMEIW
NVGYINSIFWFRVMREGEKSKHKFHFNNNKTCEHVWKAFRDFFNFYIQER
KVDPKLMWGRQPPKVQRLTLLSDAHTPAMRHANVVPKISRDNFSSLIVDP
GNYGNPIMADPYANGNKIQLSKQDSGPKLVFTSDKTLTGSGRGLQQQPDQ
QEARNGNLQNMFRPHDEAMFTVPKQGEQPHHEQEHQGPQTAVL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011258XLOC_011258Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020026TCONS_00020026Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019749Band_41_domain
IPR018980FERM_PH-like_C
IPR011993PH_dom-like
IPR019748FERM_central
IPR018979FERM_N
IPR014352FERM/acyl-CoA-bd_prot_3-hlx
IPR000299FERM_domain
IPR029071Ubiquitin-rel_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005856 cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019749Band 4.1 domainPRINTSPR00935BAND41coord: 49..61
score: 39.9
coord: 130..150
score: 27.78
coord: 117..130
score: 43.3
IPR019749Band 4.1 domainSMARTSM00295B41_5coord: 12..210
e-value: 5.1E-32
score: 122.4
IPR018980FERM, C-terminal PH-like domainSMARTSM01196FERM_C_3coord: 217..304
e-value: 1.7E-10
score: 50.9
IPR018980FERM, C-terminal PH-like domainPFAMPF09380FERM_Ccoord: 222..302
e-value: 1.3E-7
score: 31.8
IPR011993PH domain-likeGENE3D2.30.29.30coord: 205..301
e-value: 9.5E-9
score: 35.1
IPR011993PH domain-likeSUPERFAMILY50729PH domain-likecoord: 205..306
IPR019748FERM central domainPFAMPF00373FERM_Mcoord: 103..208
e-value: 1.1E-7
score: 32.2
IPR019748FERM central domainCDDcd14473FERM_B-lobecoord: 111..199
e-value: 3.16833E-15
score: 70.353
IPR019748FERM central domainSUPERFAMILY47031Second domain of FERMcoord: 102..205
NoneNo IPR availableGENE3D3.10.20.90coord: 16..97
e-value: 6.4E-16
score: 57.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 424..443
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 384..403
IPR018979FERM, N-terminalPFAMPF09379FERM_Ncoord: 20..83
e-value: 3.3E-11
score: 42.9
IPR014352FERM/acyl-CoA-binding protein, 3-helical bundleGENE3D1.20.80.10coord: 98..201
e-value: 1.3E-16
score: 60.4
IPR000299FERM domainPROSITEPS50057FERM_3coord: 16..300
score: 52.417
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 17..100

Blast
[Close]
BLAST of TCONS_00020026-protein vs. Swiss-Prot (Human)
Match: FRMD3 (FERM domain-containing protein 3 OS=Homo sapiens GN=FRMD3 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 9.723e-37
Identity = 81/293 (27.65%), Postives = 162/293 (55.29%), Query Frame = 0 
Query:    6 NTVQSIGINYKVIQIELLDDSDLSRNIFKKTKTKEILENVFQIIDIIEKEYFGLYFKNLQTDERMWLKPSGTVWSQIVKVMEPPYQLYFGVKYFPFDPLSLQEDVTLYMMYLQLRRDIKDGRCICSDHERAEMLAHILQAEAGDHGPSS-AHKYRHFFVNLQQTTPELERAVLDIYTH-MGGMDPPTCEMKLMEKALTVTYYSQEIYHVRSDAQPGLKRLTLTLGPIGIGLYQNSVKLDIFNWMEIWNVGYINSIFWFRVMREGEKSKHKFHFNNNKTCEHVWKAFRDFFNFY 296
            ++V+S+    +   I LLDDS++S +I ++TK + +++++     ++EK+YFG+ + + +  +R WL+P+ +++ Q+     PPY + F VK++P +PL ++E++T Y++YLQ++RDI  GR +CS  + A + A I+QAE GD+ P      Y   F    + + +LER +++I+ + + G  PP  E  L+ KA T+  Y  + +  +              G +   ++Q + ++ +  W ++  + +    F+    ++ +K+   FH +    C+H+WK   +   FY
Sbjct:   23 SSVKSLSQEMRCT-IRLLDDSEISCHIQRETKGQFLIDHICNYYSLLEKDYFGIRYVDPEK-QRHWLEPNKSIFKQMK--THPPYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCSFSDAAYLGACIVQAELGDYDPDEHPENYISEFEIFPKQSQKLERKIVEIHKNELRGQSPPVAEFNLLLKAHTLETYGVDPHPCKDSTGTTTFLGFTAAGFV---VFQGNKRIHLIKWPDVCKLKFEGKTFYVIGTQKEKKAMLAFHTSTPAACKHLWKCGVENQAFY 308
The following BLAST results are available for this feature:
BLAST of TCONS_00020026-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FRMD39.723e-3727.65FERM domain-containing protein 3 OS=Homo sapiens G... [more]
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