TCONS_00020026 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00020026
Unique Name	TCONS_00020026
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3773

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000348:78794..83325+
coding sequence from alignment at sc0000348:78794..83325+

transcript sequence

>TCONS_00020026 ID=TCONS_00020026|Name=TCONS_00020026|organism=Clytia hemisphaerica|type=transcript|length=3773bp
tttaattcaagataaaaaatttccCTTTGGTAGTCTGAATGGAATATTCA
GCCAAAacaaattcaggaaaatttttcatgaaaatgaacGTAGCGGGACA
TTTATCCGACCATATCATACGTTgtgaatttattttgaaaattactgGAA
AATCTGCATAATGGACTATTGTTGACAAGAAGGAAATCAGAGgctattgt
ttttgttttatttttgacaaaaaaggaaatttttgtcatttttcactCAG
ATATCATAAGAGTTGAAGAAGGGAAgaaggtgtaaaaaaattgaaaatag
aaGAGAAAGTACAGGAAAGGTCGTGACGTGTttggaaaaattataaaaaa
caaatcGTTGAAAGGTTCTAGTAACGTTGGAAGGAAAACATCGAGTTCAA
CACATTTCAAAAGTAATTAAACCATCATTAACAAACAGAAGCACGAATAG
CTAAAATTCAAATTGAAGACATTTCAATAATAACAATTGATTACACAATC
ATTGGAAATGCAGCGAGCGGTGAATACGGTGCAGTCCATCGGCATAAACT
ACAAAGTCATTCAAATCGAACTTCTCGACGACTCAGATCTatcaagaaat
attttcaagaaaaccAAAACGAAAGAGATcttagaaaatgttttccaaat
caTTGATATCAtcgaaaaagaatattttggattatatttcaaaaatttgc
aaaCGGACGAACGTATGTGGTTAAAGCCCAGTGGTACAGTGTGGAGCCAG
ATTGTCAAAGTTATGGAGCCACCATATCAACTGTACTTTGGTGTGAAATA
TTTCCCCTTTGATCCTCTTTCTTTACAAGAAGACGTGACACTGTATATGA
TGTACCTACAACTGAGACGTGatatcaaagatggcagatgtATTTGCTCT
GATCACGAAAGAGCTGAAATGTTGGCTCACATTCTACAAGCAGAAGCAGG
CGACCACGGTCCGTCATCGGCGCACAAATATCGTCATTTCTTTGTCAACC
TTCAACAAACAACTCCTGAGCTCGAAAGAGCCGTCTTGGATATTTACACA
CACATGGGAGGGATGGATCCACCCACGTGCGAAATGAAACTGATGGAGAA
AGCACTCACAGTCACTTACTACAGTCAAGAGATCTACCACGTGCGCTCTG
ATGCTCAACCGGGCCTCAAGAGGTTGACCCTCACCCTGGGTCCGATTGGG
ATCGGATTATATCAAAATTCAGTGAAGTTGGATATTTTTAATTGGATGGA
AATTTGGAATGTTGGCTACATTAATTCCATTTTCTGGTTCCGCGTCATGA
GAGAAGGGGAGAAAAGCAAAcataaatttcattttaataacAATAAAACG
TGCGAACACGTCTGGAAAGCTTTTCGagatttctttaatttctacATCCA
GGAACGAAAAGTAGATCCGAAGTTAATGTGGGGCCGCCAGCCACCCAAGG
TGCAACGTCTGACATTGTTAAGCGACGCCCACACACCAGCGATGCGACAC
GCAAATGTCGTCCCAAAAATCTCTCGTGATAATTTCTCAAGCCTTATTGT
TGATCCTGGTAACTATGGAAACCCAATAATGGCGGACCCTTATGCTAACG
GAAACAAAATTCAACTTAGCAAGCAAGATTCGGGACCCAAGTTGGTGTTC
ACCTCCGACAAGACGTTGACAGGAAGCGGGCGCGGTCTCCAACAACAGCC
AGATCAACAAGAAGCGAGAAACGGCAATCTTCAAAACATGTTTCGACCTC
ATGACGAGGCTATGTTCACGGTACCGAAACAAGGCGAACAGCCGCATCAC
GAACAGGAACATCAGGGCCCACAAACAGCGGTTCTCTAAACCTTCATCCA
ATCCAACTATTCACCATTCAATGAAAACATTTACGTCAAGGATGAAGCCA
AAAGAGGAAATCTTGGTCTGTTACCTCATGGATAATCAATAACATTGCCA
ATGAGCAGAAGGGCAGATAGTGTCTTTCGAAGCAGTTAGGTTCTCTAATG
GGCTCACAGAATAGTCAAAATAAACTTGATATAGAACAAAATAGAAttct
tgacttttaacaaaggCCTTAATGGaccaaaacattcaaattaCGTCCAG
ATTCTGTGTAAATAAAATCGAATGAAAATATCTTATAATAAAGTTATCAT
TATCTTGATGTAGTAAAGTATTATCTAtataaaattttcgaaaagttaat
aaaaatataaacaaaaatattcctCTAGTAGTCATTATTCTTCAAAAGGC
TATGGTTTGTACTACATATGGTAGCAGTCACACAATGCATCAAAAATACC
ATATTTAATCCAGACATAGATTATGATAATTTAAATTGACTCTAATAACA
AAATTgtagtttttataagaaagacaACGAGATACTCGTTGAAAAGAAGA
GAACTAGCAAGAAAATGCATTCAATTATCAAAGTAATGGAGAGCATGGGG
GCCCCCTACAGGTAATAAATTTAAGCCAATTGCACTGTGGCTGCATCTTG
GTGCTGCACAGTGATCAAAATACTTCGAAACTTATCAATGCAAATAATCA
GTTTGGAGCGAGAAACATTCTCGAAATACATGATGTTCTCTAGGTGATGT
TCaccatcaaaatattttgtcatcCGCAAAAAGAACAGCATATCATCACG
TTCAACGAGGTACGACACAGAAATTATACTTAACTGCATGGCGACGGGGA
AAGCATCAAATATAGTTTTGTCTCCAGTCCCTTTTAACTGAAACCGTTGG
AAAAATGTATTTCTCTGCTCCACCGGGTCGATCTCGTTGTCACGTTCTAA
ATCAATGGCTGCCATGGGAACCATGTAAACAAACGTATGAAGCTGTTTGA
TCAGCCTCTTTTTCAGTAACCACGTGACTATTTGCGCATGCTCAACATGC
TTATCATTACATAATGGATTTCGATAGTCACCCAGGGTTAACGGAAAGGA
GAACTTTTGAAACACGTTATGAAGTGATTGTTCAGGGAATTTCTTCGTGA
ATTCCTCAGAACATTTAGAATCAATTTCAGTGGGAACACTCTCAGCAAGA
ACATAAATATTGCTTTCAGCTAAAGGATAGATAACAATACATTTACCCCA
ATAAATCAAATGAGCAACTATTTGAAAGATTTGTGGTAAGGAGATGTCAG
CATCTTGGCAAAGTGTTTGGAAGTTCTTGACAGGTCGGGATAAAGTGATT
AGTCGGTGTAGCACGGGAGAAGCATCGGGAGGAAGGATTTTGATGAGGTT
TGCAATCTCATTTTCTTCATGTTCATTGTCGTCATCGTCAGTGAGAAGGA
GAGTGTGGTAGGGTTTGATTCTGCGGATGTAAGTATTGAATTTTGATGTA
TCAATCATCGTCTCCCGAATCTCCGCTTTATGGATTTTGTGAGGAAAACA
GTAATTAAGACCAAGCCATCCGTTAACGTTGATGTTGACAATGCCGTAAT
CACACATCGATTGGAACGCAGATACGATGTCTTTGGCCAGTTGACTTTTT
GCCAGCGTTCTTTCGTGAACGTTTTGTTCAGATTCGGGGAGGTCTTCGAT
ACGATCGATTTCTAAGACCATGATCTCGTGCTGGTTGGACAGATATCGTA
CcctatgatttaaaaaaagatgatGGACTCAATTATGGCTagcatttttg
gccattttagcGTTTTTCTGAATCTAAAGTTCGGACGAGAATGACATGTT
AAGGCTTTCTACTTTTATCTAATTAAATATTTCGATTTGGCAGGGGTATA
ATGGCTTCCaagctatattctca

Run BLAST on NCBI

protein sequence of TCONS_00020026-protein

>TCONS_00020026-protein ID=TCONS_00020026-protein|Name=TCONS_00020026-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
MQRAVNTVQSIGINYKVIQIELLDDSDLSRNIFKKTKTKEILENVFQIID
IIEKEYFGLYFKNLQTDERMWLKPSGTVWSQIVKVMEPPYQLYFGVKYFP
FDPLSLQEDVTLYMMYLQLRRDIKDGRCICSDHERAEMLAHILQAEAGDH
GPSSAHKYRHFFVNLQQTTPELERAVLDIYTHMGGMDPPTCEMKLMEKAL
TVTYYSQEIYHVRSDAQPGLKRLTLTLGPIGIGLYQNSVKLDIFNWMEIW
NVGYINSIFWFRVMREGEKSKHKFHFNNNKTCEHVWKAFRDFFNFYIQER
KVDPKLMWGRQPPKVQRLTLLSDAHTPAMRHANVVPKISRDNFSSLIVDP
GNYGNPIMADPYANGNKIQLSKQDSGPKLVFTSDKTLTGSGRGLQQQPDQ
QEARNGNLQNMFRPHDEAMFTVPKQGEQPHHEQEHQGPQTAVL

Run BLAST on NCBI

transcript from alignment at sc0000348:78794..83325+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00020026 ID=TCONS_00020026|Name=TCONS_00020026|organism=Clytia hemisphaerica|type=transcript|length=4532bp|location=Sequence derived from alignment at sc0000348:78794..83325+ (Clytia hemisphaerica)
tttaattcaagataaaaaatttccCTTTGGTAGTCTGAATGGAATATTCA
GCCAAAacaaattcaggaaaatttttcatgaaaatgaacGTAGCGGGACA
TTTATCCGACCATATCATACGTTgtgaatttattttgaaaattactgGAA
AATCTGCATAATGGACTATTGTTGACAAGAAGGAAATCAGAGgctattgt
ttttgttttatttttgacaaaaaaggaaatttttgtcatttttcactCAG
ATATCATAAGAGTTGAAGAAGGGAAgaaggtgtaaaaaaattgaaaatag
aaGAGAAAGTACAGGAAAGGTCGTGACGTGTttggaaaaattataaaaaa
caaatcGTTGAAAGGTTCTAGTAACGTTGGAAGGAAAACATCGAGTTCAA
CACATTTCAAAAGTAATTAAACCATCATTAACAAACAGAAGCACGAATAG
CTAAAATTCAAATTGAAGACATTTCAATAATAACAATTGATTACACAATC
ATTGGAAATGCAGCGAGCGGTGAATACGGTGCAGTCCATCGGCATAAACT
ACAAAGTCATTCAAATCGAACTTCTCGACGACTCAGATCTatcaagaaat
attttcaagaaaaccAAAACGAAAGAGATcttagaaaatgttttccaaat
caTTGATATCAtcgaaaaagaatattttggattatatttcaaaaatttgc
aaaCGGACGAACGTATGTGGTTAAAGCCCAGTGGTACAGTGTGGAGCCAG
ATTGTCAAAGTTATGGAGCCACCATATCAACTGTACTTTGGTGTGAAATA
TTTCCCCTTTGATCCTCTTTCTTTACAAGAAGACGTGACACTGTATATGA
TGTACCTACAACTGAGACGTGatatcaaagatggcagatgtATTTGCTCT
GATCACGAAAGAGCTGAAATGTTGGCTCACATTCTACAAGCAGAAGCAGG
TAGGGTCTTTCCCTTATAAGTTTTTCTATATAAACACAAAACTTCATAAT
TTGAGTCCATTCCCAGTATACACGATTCTTCTTAACTTTCCAATCAACGT
TTCATGTGTAGATCAAGCAAACATCCCTCTCAcggtaattaaaaaaaaat
cagggGATGTAGATTAGACAGACAACATATATTTGATGATTTTCCCATAA
TGCATTTCAGGCGACCACGGTCCGTCATCGGCGCACAAATATCGTCATTT
CTTTGTCAACCTTCAACAAACAACTCCTGAGCTCGAAAGAGCCGTCTTGG
ATGTAAGTATAATAGATCAATTCGGGGCATCCTTTTCACAGCAAGTTATA
GATTCAGAGCATCCCCTTCTCAcggacccggtaggattttttagccagtg
ggggtaaaattaacagaccaaaactcgatggggattgatattcccatgtt
tttgaTGGCtcgggatttgaattccattgttttcgagtcaCAGTGGGAAT
GGAAGAATAgccacaatattttgcagtgagctTTTGCTTATCTCATTATT
TTCGACGGAGACAAaaaatggaatataattttacgggagacgatattttg
gccaatttttccagtgggaaggattcccagttggtctgtgagaagggggt
gtgttaTAAAAAACAAGCGAATTTAACCAAAGTTCTTATTCCTGAAGAGT
TAAAAACTGGAAGCTCCGAGCCTAAGTAAAAGCAAAATATGTCAACATGT
AGCCTGAATGTCGTATACTAACCCATCTTCAATTTTTCTCTTGGTCAGAT
TTACACACACATGGGAGGGATGGATCCACCCACGTGCGAAATGAAACTGA
TGGAGAAAGCACTCACAGTCACTTACTACAGTCAAGAGATCTACCACGTG
CGCTCTGATGCTCAACCGGGCCTCAAGAGGTTGACCCTCACCCTGGGTCC
GATTGGGATCGGATTATATCAAAATTCAGTGAAGTTGGATATTTTTAATT
GGATGGAAATTTGGAATGTTGGCTACATTAATTCCATTTTCTGGTTCCGC
GTCATGAGAGAAGGGGAGAAAAGCAAAcataaatttcattttaataacAA
TAAAACGTGCGAACACGTCTGGAAAGCTTTTCGagatttctttaatttct
acATCCAGGAACGAAAAGTAGATCCGAAGTTAATGTGGGGCCGCCAGCCA
CCCAAGGTGCAACGTCTGACATTGTTAAGCGACGCCCACACACCAGCGAT
GCGACACGCAAATGTCGTCCCAAAAATCTCTCGTGATAATTTCTCAAGCC
TTATTGTTGATCCTGGTAACTATGGAAACCCAATAATGGCGGACCCTTAT
GCTAACGGAAACAAAATTCAACTTAGCAAGCAAGATTCGGGACCCAAGTT
GGTGTTCACCTCCGACAAGACGTTGACAGGAAGCGGGCGCGGTCTCCAAC
AACAGCCAGATCAACAAGAAGCGAGAAACGGCAATCTTCAAAACATGTTT
CGACCTCATGACGAGGCTATGTTCACGGTACCGAAACAAGGCGAACAGCC
GCATCACGAACATGAACATCAGGGACCACAGACAGCGGTTCTCTAAACNG
CCGCATCATGAACAGGAACATCAGGGCCCACAAACAGCGGTTCTCTAAAC
CTTCATCCAATCCAACTATTCACCATTCAATGAAAACATTTACGTCAAGG
ATGAAGCCAAAAGAGGAAATCTTGGTCTGTTACCTCATGGATAATCAATA
ACATTGCCAATGAGCAGAAGGGCAGATAGTGTCTTTCGAAGCAGTTAGGT
TCTCTAATGGGCTCACAGAATAGTCAAAATAAACTTGATATAGAACAAAA
TAGAAttcttgacttttaacaaaggCCTTAATGGaccaaaacattcaaat
taCGTCCAGATTCTGTGTAAATAAAATCGAATGAAAATATCTTATAATAA
AGTTATCATTATCTTGATGTAGTAAAGTATTATCTAtataaaattttcga
aaagttaataaaaatataaacaaaaatattcctCTAGTAGTCATTATTCT
TCAAAAGGCTATGGTTTGTACTACATATGGTAGCAGTCACACAATGCATC
AAAAATACCATATTTAATCCAGACATAGATTATGATAATTTAAATTGACT
CTAATAACAAAATTgtagtttttataagaaagacaACGAGATACTCGTTG
AAAAGAAGAGAACTAGCAAGAAAATGCATTCAATTATCAAAGTAATGGAG
AGCATGGGGGCCCCCTACAGGTAATAAATTTAAGCCAATTGCACTGTGGC
TGCATCTTGGTGCTGCACAGTGATCAAAATACTTCGAAACTTATCAATGC
AAATAATCAGTTTGGAGCGAGAAACATTCTCGAAATACATGATGTTCTCT
AGGTGATGTTCaccatcaaaatattttgtcatcCGCAAAAAGAACAGCAT
ATCATCACGTTCAACGAGGTACGACACAGAAATTATACTTAACTGCATGG
CGACGGGGAAAGCATCAAATATAGTTTTGTCTCCAGTCCCTTTTAACTGA
AACCGTTGGAAAAATGTATTTCTCTGCTCCACCGGGTCGATCTCGTTGTC
ACGTTCTAAATCAATGGCTGCCATGGGAACCATGTAAACAAACGTATGAA
GCTGTTTGATCAGCCTCTTTTTCAGTAACCACGTGACTATTTGCGCATGC
TCAACATGCTTATCATTACATAATGGATTTCGATAGTCACCCAGGGTTAA
CGGAAAGGAGAACTTTTGAAACACGTTATGAAGTGATTGTTCAGGGAATT
TCTTCGTGAATTCCTCAGAACATTTAGAATCAATTTCAGTGGGAACACTC
TCAGCAAGAACATAAATATTGCTTTCAGCTAAAGGATAGATAACAATACA
TTTACCCCAATAAATCAAATGAGCAACTATTTGAAAGATTTGTGGTAAGG
AGATGTCAGCATCTTGGCAAAGTGTTTGGAAGTTCTTGACAGGTCGGGAT
AAAGTGATTAGTCGGTGTAGCACGGGAGAAGCATCGGGAGGAAGGATTTT
GATGAGGTTTGCAATCTCATTTTCTTCATGTTCATTGTCGTCATCGTCAG
TGAGAAGGAGAGTGTGGTAGGGTTTGATTCTGCGGATGTAAGTATTGAAT
TTTGATGTATCAATCATCGTCTCCCGAATCTCCGCTTTATGGATTTTGTG
AGGAAAACAGTAATTAAGACCAAGCCATCCGTTAACGTTGATGTTGACAA
TGCCGTAATCACACATCGATTGGAACGCAGATACGATGTCTTTGGCCAGT
TGACTTTTTGCCAGCGTTCTTTCGTGAACGTTTTGTTCAGATTCGGGGAG
GTCTTCGATACGATCGATTTCTAAGACCATGATCTCGTGCTGGTTGGACA
GATATCGTACcctatgatttaaaaaaagatgatGGACTCAATTATGGCTa
gcatttttggccattttagcGTTTTTCTGAATCTAAAGTTCGGACGAGAA
TGACATGTTAAGGCTTTCTACTTTTATCTAATTAAATATTTCGATTTGGC
AGGGGTATAATGGCTTCCaagctatattctca

Coding sequence (CDS) from alignment at sc0000348:78794..83325+

>TCONS_00020026 ID=TCONS_00020026|Name=TCONS_00020026|organism=Clytia hemisphaerica|type=CDS|length=5328bp|location=Sequence derived from alignment at sc0000348:78794..83325+ (Clytia hemisphaerica)
ATGCAGCGAGCGGTGAATACGGTGCAGTCCATCGGCATAAACTACAAAGT
CATTCAAATCGAACTTCTCGACGACTCAGATCTatcaagaaatattttca
agaaaaccAAAACGAAAGAGATcttagaaaatgttttccaaatcaTTGAT
ATCAtcgaaaaagaatattttggattatatttcaaaaatttgcaaaCGGA
CGAACGTATGTGGTTAAAGCCCAGTGGTACAGTGTGGAGCCAGATTGTCA
AAGTTATGGAGCCACCATATCAACTGTACTTTGGTGTGAAATATTTCCCC
TTTGATCCTCTTTCTTTACAAGAAGACGTGACACTGTATATGATGTACCT
ACAACTGAGACGTGatatcaaagatggcagatgtATTTGCTCTGATCACG
AAAGAGCTGAAATGTTGGCTCACATTCTACAAGCAGAAGCAGGCGACCAC
GGTCCGTCATCGGCGCACAAATATCGTCATTTCTTTGTCAACCTTCAACA
AACAACTCCTGAGCTCGAAAGAGCCGTCTTGGATATTTACACACACATGG
GAGGGATGGATCCACCCACGTGCGAAATGAAACTGATGGAGAAAGCACTC
ACAGTCACTTACTACAGTCAAGAGATCTACCACGTGCGCTCTGATGCTCA
ACCGGGCCTCAAGAGGTTGACCCTCACCCTGGGTCCGATTGGGATCGGAT
TATATCAAAATTCAGTGAAGTTGGATATTTTTAATTGGATGGAAATTTGG
AATGTTGGCTACATTAATTCCATTTTCTGGTTCCGCGTCATGAGAGAAGG
GGAGAAAAGCAAAcataaatttcattttaataacAATAAAACGTGCGAAC
ACGTCTGGAAAGCTTTTCGagatttctttaatttctacATCCAGGAACGA
AAAGTAGATCCGAAGTTAATGTGGGGCCGCCAGCCACCCAAGGTGCAACG
TCTGACATTGTTAAGCGACGCCCACACACCAGCGATGCGACACGCAAATG
TCGTCCCAAAAATCTCTCGTGATAATTTCTCAAGCCTTATTGTTGATCCT
GGTAACTATGGAAACCCAATAATGGCGGACCCTTATGCTAACGGAAACAA
AATTCAACTTAGCAAGCAAGATTCGGGACCCAAGTTGGTGTTCACCTCCG
ACAAGACGTTGACAGGAAGCGGGCGCGGTCTCCAACAACAGCCAGATCAA
CAAGAAGCGAGAAACGGCAATCTTCAAAACATGTTTCGACCTCATGACGA
GGCTATGTTCACGGTACCGAAACAAGGCGAACAGCCGCATCACGAACAGG
AACATCAGGGCCCACAAACAGCGGTTCTCTAAATGCAGCGAGCGGTGAAT
ACGGTGCAGTCCATCGGCATAAACTACAAAGTCATTCAAATCGAACTTCT
CGACGACTCAGATCTatcaagaaatattttcaagaaaaccAAAACGAAAG
AGATcttagaaaatgttttccaaatcaTTGATATCAtcgaaaaagaatat
tttggattatatttcaaaaatttgcaaaCGGACGAACGTATGTGGTTAAA
GCCCAGTGGTACAGTGTGGAGCCAGATTGTCAAAGTTATGGAGCCACCAT
ATCAACTGTACTTTGGTGTGAAATATTTCCCCTTTGATCCTCTTTCTTTA
CAAGAAGACGTGACACTGTATATGATGTACCTACAACTGAGACGTGatat
caaagatggcagatgtATTTGCTCTGATCACGAAAGAGCTGAAATGTTGG
CTCACATTCTACAAGCAGAAGCAGGCGACCACGGTCCGTCATCGGCGCAC
AAATATCGTCATTTCTTTGTCAACCTTCAACAAACAACTCCTGAGCTCGA
AAGAGCCGTCTTGGATATTTACACACACATGGGAGGGATGGATCCACCCA
CGTGCGAAATGAAACTGATGGAGAAAGCACTCACAGTCACTTACTACAGT
CAAGAGATCTACCACGTGCGCTCTGATGCTCAACCGGGCCTCAAGAGGTT
GACCCTCACCCTGGGTCCGATTGGGATCGGATTATATCAAAATTCAGTGA
AGTTGGATATTTTTAATTGGATGGAAATTTGGAATGTTGGCTACATTAAT
TCCATTTTCTGGTTCCGCGTCATGAGAGAAGGGGAGAAAAGCAAAcataa
atttcattttaataacAATAAAACGTGCGAACACGTCTGGAAAGCTTTTC
GagatttctttaatttctacATCCAGGAACGAAAAGTAGATCCGAAGTTA
ATGTGGGGCCGCCAGCCACCCAAGGTGCAACGTCTGACATTGTTAAGCGA
CGCCCACACACCAGCGATGCGACACGCAAATGTCGTCCCAAAAATCTCTC
GTGATAATTTCTCAAGCCTTATTGTTGATCCTGGTAACTATGGAAACCCA
ATAATGGCGGACCCTTATGCTAACGGAAACAAAATTCAACTTAGCAAGCA
AGATTCGGGACCCAAGTTGGTGTTCACCTCCGACAAGACGTTGACAGGAA
GCGGGCGCGGTCTCCAACAACAGCCAGATCAACAAGAAGCGAGAAACGGC
AATCTTCAAAACATGTTTCGACCTCATGACGAGGCTATGTTCACGGTACC
GAAACAAGGCGAACAGCCGCATCACGAACAGGAACATCAGGGCCCACAAA
CAGCGGTTCTCTAAATGCAGCGAGCGGTGAATACGGTGCAGTCCATCGGC
ATAAACTACAAAGTCATTCAAATCGAACTTCTCGACGACTCAGATCTatc
aagaaatattttcaagaaaaccAAAACGAAAGAGATcttagaaaatgttt
tccaaatcaTTGATATCAtcgaaaaagaatattttggattatatttcaaa
aatttgcaaaCGGACGAACGTATGTGGTTAAAGCCCAGTGGTACAGTGTG
GAGCCAGATTGTCAAAGTTATGGAGCCACCATATCAACTGTACTTTGGTG
TGAAATATTTCCCCTTTGATCCTCTTTCTTTACAAGAAGACGTGACACTG
TATATGATGTACCTACAACTGAGACGTGatatcaaagatggcagatgtAT
TTGCTCTGATCACGAAAGAGCTGAAATGTTGGCTCACATTCTACAAGCAG
AAGCAGGCGACCACGGTCCGTCATCGGCGCACAAATATCGTCATTTCTTT
GTCAACCTTCAACAAACAACTCCTGAGCTCGAAAGAGCCGTCTTGGATAT
TTACACACACATGGGAGGGATGGATCCACCCACGTGCGAAATGAAACTGA
TGGAGAAAGCACTCACAGTCACTTACTACAGTCAAGAGATCTACCACGTG
CGCTCTGATGCTCAACCGGGCCTCAAGAGGTTGACCCTCACCCTGGGTCC
GATTGGGATCGGATTATATCAAAATTCAGTGAAGTTGGATATTTTTAATT
GGATGGAAATTTGGAATGTTGGCTACATTAATTCCATTTTCTGGTTCCGC
GTCATGAGAGAAGGGGAGAAAAGCAAAcataaatttcattttaataacAA
TAAAACGTGCGAACACGTCTGGAAAGCTTTTCGagatttctttaatttct
acATCCAGGAACGAAAAGTAGATCCGAAGTTAATGTGGGGCCGCCAGCCA
CCCAAGGTGCAACGTCTGACATTGTTAAGCGACGCCCACACACCAGCGAT
GCGACACGCAAATGTCGTCCCAAAAATCTCTCGTGATAATTTCTCAAGCC
TTATTGTTGATCCTGGTAACTATGGAAACCCAATAATGGCGGACCCTTAT
GCTAACGGAAACAAAATTCAACTTAGCAAGCAAGATTCGGGACCCAAGTT
GGTGTTCACCTCCGACAAGACGTTGACAGGAAGCGGGCGCGGTCTCCAAC
AACAGCCAGATCAACAAGAAGCGAGAAACGGCAATCTTCAAAACATGTTT
CGACCTCATGACGAGGCTATGTTCACGGTACCGAAACAAGGCGAACAGCC
GCATCACGAACAGGAACATCAGGGCCCACAAACAGCGGTTCTCTAAATGC
AGCGAGCGGTGAATACGGTGCAGTCCATCGGCATAAACTACAAAGTCATT
CAAATCGAACTTCTCGACGACTCAGATCTatcaagaaatattttcaagaa
aaccAAAACGAAAGAGATcttagaaaatgttttccaaatcaTTGATATCA
tcgaaaaagaatattttggattatatttcaaaaatttgcaaaCGGACGAA
CGTATGTGGTTAAAGCCCAGTGGTACAGTGTGGAGCCAGATTGTCAAAGT
TATGGAGCCACCATATCAACTGTACTTTGGTGTGAAATATTTCCCCTTTG
ATCCTCTTTCTTTACAAGAAGACGTGACACTGTATATGATGTACCTACAA
CTGAGACGTGatatcaaagatggcagatgtATTTGCTCTGATCACGAAAG
AGCTGAAATGTTGGCTCACATTCTACAAGCAGAAGCAGGCGACCACGGTC
CGTCATCGGCGCACAAATATCGTCATTTCTTTGTCAACCTTCAACAAACA
ACTCCTGAGCTCGAAAGAGCCGTCTTGGATATTTACACACACATGGGAGG
GATGGATCCACCCACGTGCGAAATGAAACTGATGGAGAAAGCACTCACAG
TCACTTACTACAGTCAAGAGATCTACCACGTGCGCTCTGATGCTCAACCG
GGCCTCAAGAGGTTGACCCTCACCCTGGGTCCGATTGGGATCGGATTATA
TCAAAATTCAGTGAAGTTGGATATTTTTAATTGGATGGAAATTTGGAATG
TTGGCTACATTAATTCCATTTTCTGGTTCCGCGTCATGAGAGAAGGGGAG
AAAAGCAAAcataaatttcattttaataacAATAAAACGTGCGAACACGT
CTGGAAAGCTTTTCGagatttctttaatttctacATCCAGGAACGAAAAG
TAGATCCGAAGTTAATGTGGGGCCGCCAGCCACCCAAGGTGCAACGTCTG
ACATTGTTAAGCGACGCCCACACACCAGCGATGCGACACGCAAATGTCGT
CCCAAAAATCTCTCGTGATAATTTCTCAAGCCTTATTGTTGATCCTGGTA
ACTATGGAAACCCAATAATGGCGGACCCTTATGCTAACGGAAACAAAATT
CAACTTAGCAAGCAAGATTCGGGACCCAAGTTGGTGTTCACCTCCGACAA
GACGTTGACAGGAAGCGGGCGCGGTCTCCAACAACAGCCAGATCAACAAG
AAGCGAGAAACGGCAATCTTCAAAACATGTTTCGACCTCATGACGAGGCT
ATGTTCACGGTACCGAAACAAGGCGAACAGCCGCATCACGAACAGGAACA
TCAGGGCCCACAAACAGCGGTTCTCTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011258	XLOC_011258	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00020026-exon-sc0000348-1491911889:78794..79742	TCONS_00020026-exon-sc0000348-1491911889:78794..79742	Clytia hemisphaerica	exon
TCONS_00020026-exon-sc0000348-1510915933:78794..79742	TCONS_00020026-exon-sc0000348-1510915933:78794..79742	Clytia hemisphaerica	exon
TCONS_00020026-exon-sc0000348-1575043694:78794..79742	TCONS_00020026-exon-sc0000348-1575043694:78794..79742	Clytia hemisphaerica	exon
TCONS_00020026-exon-sc0000348-1491911889:79954..80045	TCONS_00020026-exon-sc0000348-1491911889:79954..80045	Clytia hemisphaerica	exon
TCONS_00020026-exon-sc0000348-1510915933:79954..80045	TCONS_00020026-exon-sc0000348-1510915933:79954..80045	Clytia hemisphaerica	exon
TCONS_00020026-exon-sc0000348-1575043694:79954..80045	TCONS_00020026-exon-sc0000348-1575043694:79954..80045	Clytia hemisphaerica	exon
TCONS_00020026-exon-sc0000348-1491911889:80542..81304	TCONS_00020026-exon-sc0000348-1491911889:80542..81304	Clytia hemisphaerica	exon
TCONS_00020026-exon-sc0000348-1510915933:80542..81304	TCONS_00020026-exon-sc0000348-1510915933:80542..81304	Clytia hemisphaerica	exon
TCONS_00020026-exon-sc0000348-1575043694:80542..81304	TCONS_00020026-exon-sc0000348-1575043694:80542..81304	Clytia hemisphaerica	exon
TCONS_00020026-exon-sc0000348-1491911889:81357..83325	TCONS_00020026-exon-sc0000348-1491911889:81357..83325	Clytia hemisphaerica	exon
TCONS_00020026-exon-sc0000348-1510915933:81357..83325	TCONS_00020026-exon-sc0000348-1510915933:81357..83325	Clytia hemisphaerica	exon
TCONS_00020026-exon-sc0000348-1575043694:81357..83325	TCONS_00020026-exon-sc0000348-1575043694:81357..83325	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00020026-protein	TCONS_00020026-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000348	supercontig	sc0000348:78794..83325 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.624825	1.75486	1.09511	0.760922	0.49238	0.323671	1.55256	0.174308	0	0	0.182418	0.186972	1.29156	1.06127	0.234944	0.343793	0	0	0.260896	0.465688	0	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR019749	Band_41_domain
IPR018980	FERM_PH-like_C
IPR011993	PH_dom-like
IPR019748	FERM_central
IPR018979	FERM_N
IPR014352	FERM/acyl-CoA-bd_prot_3-hlx
IPR000299	FERM_domain
IPR029071	Ubiquitin-rel_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0005856	cytoskeleton

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005856	cytoskeleton

Blast

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BLAST of TCONS_00020026 vs. Swiss-Prot (Human)
Match: NPRL3 (GATOR complex protein NPRL3 OS=Homo sapiens GN=NPRL3 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 3.151e-65
Identity = 137/411 (33.33%), Postives = 220/411 (53.53%), Query Frame = -2

Query: 2495 RVRYLSNQHEIMVL---EIDRIEDLPESEQNVHERTLAKSQLAKDIVSAFQSMCDYGIVNINVNGWLGLNYCFPHKIHKAEIRETMIDTSKFNTYIRRIKPYXXXXXXXXXXXXXXXXEIANLIKILPPDASPVLHRLITLSRPVKNFQTLCQDADISLPQIFQIVAHLIYWGKCIVIYPLAESNIYVLAESVPTEIDSKCSEEFTKKFPEQSLHNVFQKFSFPLTLGDYRNPLCND-KHVEHAQIVTWLLKKRLIKQLHTFVYMVPMAAIDLERDNEID----------------------PVEQRNTFF-------QRFQLKGTGD--------KTIFDAFPVAMQLSIISVSYLVERDDMLFFLRMTKYFDGEHHLENIMYFENVSRSKLIICIDKFRSILITVQHQD 3604
            R +YL+ + ++++    E+  + D  E  Q+     L K +LA+D+  A+ S+C  G+V +++N WL +++C PHKIH A    ++I        ++ I+PYH LLL  D+          +L+  LP D SP L R+I  +  VKN Q L QDAD++L Q+FQ+ AHL+YWGK I+IYPL E+N+Y+L+ +    + S  +E+F+ +FP   L +V  KFS P++L ++RNPL    +  +  Q+V W+L++RL+ QLHT+V ++   + +  R  E D                      P    +             +L  +GD        + +  +     + +I+SV      +D+  F R+  YF G HHLE IMY EN  RS+L++  DKFRS+L+   H+D
Sbjct:  159 RCQYLTREAKLILALQDEVSAMADGNEGPQSPFHHILPKCKLARDLKEAYDSLCTSGVVRLHINSWLEVSFCLPHKIHYAA--SSLIPPEAIERSLKAIRPYHALLLLSDEK---------SLLGELPIDCSPALVRVIKTTSAVKNLQQLAQDADLALLQVFQLAAHLVYWGKAIIIYPLCENNVYMLSPNASVCLYSPLAEQFSHQFPSHDLPSVLAKFSLPVSLSEFRNPLAPAVQETQLIQMVVWMLQRRLLIQLHTYVCLMASPSEEEPRPREDDVPFTARVGGRSLSTPNALSFGSPTSSDDMTLTSPSMDNSSAELLPSGDSPLNQRMTENLLASLSEHERAAILSVPAAQNPEDLRMFARLLHYFRGRHHLEEIMYNENTRRSQLLMLFDKFRSVLVVTTHED 558

The following BLAST results are available for this feature:

BLAST of TCONS_00020026 vs. Swiss-Prot (Human)

BLAST of TCONS_00020026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NPRL3	3.151e-65	33.33	GATOR complex protein NPRL3 OS=Homo sapiens GN=NPR...	[more]

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TCONS_00020026 (transcript) - C. hemisphaerica