TCONS_00018246-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018246-protein
Unique NameTCONS_00018246-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018246-protein ID=TCONS_00018246-protein|Name=TCONS_00018246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MEMYQPNAVVLQCGADSLSGDRLGCFNLSLKGHAQCVDFIKKFNLPLLIL
GGGGYTIRNVARCWTYETSVALEVDIPNELPYNDYFEYFGPDFKLHIQPS
NMQNQNTPEYLDKIKTRLFENLRMIPHAPGVQMAPIPEDGAPEESDDDDN
PKNVDNRISIRSSDKRIANDGEYSDSEDEGEGRRDEKNHNKSPRKKLRTA
SPIQNMVTDATKKEETPNSDAKPTTAPAASVPVADKPQNGAKATTEEPVT
KSETPAAVVTTTEEPKKEENTTEDKKASPTEESKPSTEEAKTTVTSPEKM
DVDKSPEKSAPEAQPKAEDKKTETPTAPTAEGETAKPAETTPSSTVEKPA
TGDDKTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010257XLOC_010257Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018246TCONS_00018246Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023801His_deacetylse_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023801Histone deacetylase domainGENE3D3.40.800.20coord: 1..127
e-value: 6.0E-36
score: 123.7
IPR023801Histone deacetylase domainPFAMPF00850Hist_deacetylcoord: 2..70
e-value: 6.7E-14
score: 52.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..357
NoneNo IPR availableSUPERFAMILY52768Arginase/deacetylasecoord: 2..125

Blast
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BLAST of TCONS_00018246-protein vs. Swiss-Prot (Human)
Match: HDAC2 (Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 2.083e-99
Identity = 150/196 (76.53%), Postives = 172/196 (87.76%), Query Frame = 0 
Query:    1 MEMYQPNAVVLQCGADSLSGDRLGCFNLSLKGHAQCVDFIKKFNLPLLILGGGGYTIRNVARCWTYETSVALEVDIPNELPYNDYFEYFGPDFKLHIQPSNMQNQNTPEYLDKIKTRLFENLRMIPHAPGVQMAPIPEDGAPEESDDDDNPKNVDNRISIRSSDKRIANDGEYSDSEDEGE-GRRDEKNHNKSPRK 195
            MEMYQP+AVVLQCGADSLSGDRLGCFNL++KGHA+CV+ +K FNLPLL+LGGGGYTIRNVARCWTYET+VAL+ +IPNELPYNDYFEYFGPDFKLHI PSNM NQNTPEY++KIK RLFENLRM+PHAPGVQM  IPED   E+S D+D  ++ D RISIR+SDKRIA D E+SDSEDEGE GRR+  +H K  +K
Sbjct:  250 MEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAIPEDAVHEDSGDEDG-EDPDKRISIRASDKRIACDEEFSDSEDEGEGGRRNVADHKKGAKK 444
The following BLAST results are available for this feature:
BLAST of TCONS_00018246-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDAC22.083e-9976.53Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=... [more]
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