TCONS_00018246 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018246
Unique NameTCONS_00018246
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018246 ID=TCONS_00018246|Name=TCONS_00018246|organism=Clytia hemisphaerica|type=transcript|length=1813bp
TTCTAATTCAATGTGGTTTAAAAGTTTCAAGTGAAATGATGAACCAAGAT
TTCGAAGTAAACTCTTTTTGCTTTCACAGGATATTGGTGCTGGCAAGGGG
AAATATTATGCTGTGAACTTCCCATTACGTGATGGTATTGACGATGATGC
TTATGAAAAGATTTTCAACCCAGTATTAACCAAAGTCATGGAGATGTACC
AACCAAATGCTGTCGTACTACAATGTGGTGCTGACTCCTTGTCTGGTGAT
CGTCTTGGTTGTTTCAATCTCTCTTTGAAAGGACATGCACAGTGTGTCGA
CTTTATTAAGAAATTCAACTTGCCACTGTTGATTTTGGGTGGGGGTGGAT
ATACCATTCGTAATGTTGCTCGATGTTGGACGTATGAAACCTCAGTTGCA
TTAGAAGTTGATATTCCAAACGAATTACCTTACAACGACTATTTCGAATA
TTTCGGTCCCGATTTTAAACTCCACATTCAACCTTCCAACatgcaaaatc
aaaacactCCCGAATATCTCGACAAAATCAAAACAAGGTTATTCGAAAAT
TTGAGAATGATTCCACACGCACCTGGTGTACAAATGGCTCCGATTCCAGA
AGACGGAGCACCGGAGGAGAGCGACGATGACGATAACCCAAAGAACGTTG
ATAACAGAATCTCCATTCGTTCATCTGACAAACGTATCGCGAACGACGGC
GAGTACTCTGATTCGGAAGACGAAGGTGAGGGACGCCGTGATGAGAAAAA
TCATAATAAGAGTCCACGCAAGAAGCTACGAACGGCAAGCCCCATACAAA
ACATGGTTACTGACGCCACCAAGAAAGAAGAAACACCCAATAGCGACGCT
AAACCTACCACTGCACCAGCGGCTTCCGTACCTGTTGCAGATAAACCACA
AAACGGCGCCAAAGCTACCACTGAGGAACCGGTAACGAAATCAGAAACGC
CAGCTGCTGTTGTTACTACTACTGAAGAGCCAAAGAAAGAGGAGAACACT
ACGGAAGATAAGAAAGCTTCTCCGACTGAAGAAAGTAAACCAAGCACAGA
GGAAGCAAAGACAACAGTAACTTCTCCTGAAAAGATGGATGTTGATAAAT
CACCAGAAAAGAGCGCACCTGAGGCACAACCTAAGGCTGAGGACAAGAAA
ACAGAAACTCCCACAGCGCCCACTGCTGAAGGTGAAACTGCTAAACCAGC
GGAAACGACTCCATCAAGCACTGTCGAGAAGCCAGCAACAGGCGATGATA
AAACCTCATGAGAATAGTTACTTAGCTATAAAATCACATAGACTCAAACA
AGAAGAGTCAATTGTTTATGGGACGGTATTGTCCTTAGGATTACATCATA
CACCGTGTTTTTAAAGCTGTAAATATTGGATGACCACCGATGTACAATGA
TTGGTCATAATGGATGTCAAACATGAAATATAGCCGGACTGAAATCGTGT
CAAATTATAACTATGAACGATAATCTAGTAGTAGTCTGGAGGAATGGATA
ACGAATACAAATTGACGCATTTTTATAATACCATttttaaatgttaaatt
atttAATGATAATGTTAGGTCGAAGCTATTACTATATCATACCATCAAAA
TATGGGCATATCTGGTTTCACTATAAAAGGGCAAAGACGTTATCTTCGCT
GCGTTTTCAATCAAATAGTTTATAATTTATACTTTTAACACCATACGGAT
TTGACAATTTGGTGGGTTTAATAATTTTGACGACCCATACGTTTTACAAA
TTCATTTTGTAAGTACGAGTTTTAATCGTTGCAAATATAACACCATCATT
TATAACAAGGAAA
Run BLAST on NCBI

protein sequence of TCONS_00018246-protein

>TCONS_00018246-protein ID=TCONS_00018246-protein|Name=TCONS_00018246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MEMYQPNAVVLQCGADSLSGDRLGCFNLSLKGHAQCVDFIKKFNLPLLIL
GGGGYTIRNVARCWTYETSVALEVDIPNELPYNDYFEYFGPDFKLHIQPS
NMQNQNTPEYLDKIKTRLFENLRMIPHAPGVQMAPIPEDGAPEESDDDDN
PKNVDNRISIRSSDKRIANDGEYSDSEDEGEGRRDEKNHNKSPRKKLRTA
SPIQNMVTDATKKEETPNSDAKPTTAPAASVPVADKPQNGAKATTEEPVT
KSETPAAVVTTTEEPKKEENTTEDKKASPTEESKPSTEEAKTTVTSPEKM
DVDKSPEKSAPEAQPKAEDKKTETPTAPTAEGETAKPAETTPSSTVEKPA
TGDDKTS
Run BLAST on NCBI

transcript from alignment at sc0000295:5326..11727+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018246 ID=TCONS_00018246|Name=TCONS_00018246|organism=Clytia hemisphaerica|type=transcript|length=6402bp|location=Sequence derived from alignment at sc0000295:5326..11727+ (Clytia hemisphaerica)
TTCTAATTCAATGTGGTTTAAAAGTTTCAAGTGAAATGATGAACCAAGAT
TTCGAAGTAAACTCTTTTTGCTTTCACAGGATATTGGTGCTGGCAAGGGG
AAATATTATGCTGTGAACTTCCCATTACGTGATGGTATTGACGATGATGC
TTATGAAAAGATTTTCAACCCAGTATGTACTGAAATTAGATCAATCTTCC
CATTCCATACAAAAGATATGGCCTCATTCTCATCAGAATTTatgaaacta
taataaaaatgctaaaatacctCCAAACTTTGAAAACAATCGATCCCTTG
GTCATACTTTTCTCTTCGTTTTTCACCAAAAAGAGACTGGATCTAGTGAT
AAAgatttgctaccacctcaagcaaagctaAAAACTCGAATAGGTGCACT
GGGctacttatcagcgccatccagtctatcaaagaAGCCCCCAGGCTGGG
GGATAGTGACCTCCTCCCGTACTATGGATCAGTATGGATATATTTTTCGA
CGTTCtgaatttttatcatattttcgaAAATGGAAAATCTGTACGATGCA
ATAATTAGAATGAtttctttatcattttcaaGGTATTAACCAAAGTCATG
GAGATGTACCAACCAAATGCTGTCGTACTACAATGTGGTGCTGACTCCTT
GTCTGGTGATCGTCTTGGTTGTTTCAATCTCTCTTTGAAAGGACATGCAC
AGTGTGTCGACTTTATTAAGAAATTCAACTTGCCACTGTTGATTTTGGGT
GGGGGTGGATATACCATTCGTAATGTTGCTCGATGTTGGACGTATGAAAC
CTCAGTTGCATTAGAAGTTGATATTCCAAACGGTAAGTGGCAACACGTTG
ACAAATTTTGATCGATTTTGTGCTATTTAAAGTTACTACAGTACTATAGG
ATTTCAAAAGCCTCCGTCAAATTAAGCTCAATACTGGCTTGGTCATCTGA
TCTCTGATGTAGTGAAATAGTGTTATTCTTATCAAAATTGAAGGAGATGC
ACCAGAAACTCTCAATTATGAGCCGAATATTTCATGACATTAACTTAGTG
ATTAAATTAACACTCAAAATAGGCTCTTGTTAATCCTGTAAATCTAGAAT
CCTTTAACATCATCCGTCGTTACAGGAATCTTATCTTTTTTCTAATTTCC
TTTCTCTTCAACTACAGAATTACCTTACAACGACTATTTCGAATATTTCG
GTCCCGATTTTAAACTCCACATTCAACCTTCCAACatgcaaaatcaaaac
actCCCGAATATCTCGACAAAATCAAGTAAGTCATTATAAAGAATGAAAA
CTAACCAGGAAGGAAATTTCAATCGTAAAAGTGTTATCGTCTTTAGTTAT
ACAGGTTGTACCAGGTTACAGCTTGCCCGGTAGCAGGGATCTAGATGGTG
CTTCTACTGACCTGACATAAGATATTCTTCCCGAACTCAAATCAAGCGCT
CACTCGATTCAGTGTGTTTCAACGCTGAGAGGATGTTGTTCTTGAACAAT
GCGCTGATGCTTTTGAATAACCATTGGCTTTTGCTTGGTTTACGAAAGTT
GGGGAAGAAACAAGGTTGGGAATTACTGTGTTGGAACATCTCCAATTCTC
TAAGCTTGAGAAGGATTTTACTGTGTCAGGAAAAGcgatttaaaatcttc
atacatTCTGATTGGTTTGTTGGGATACGGTCACCGTATTTTTAGCTGAT
TTCGTTTCAGCAGTTTTGTATACGTTTTCTTGAGGTCTTGGACTTATTGC
GAGAGTTCCTTATTGATAAACGACTTTTGTGTGATTAAGTTAGCTTGTTG
GTCAACAAGAACTTCCAAAGATTGGATCTTACGATCAGCATTGTCCAATT
CTTGGAACATTTCGGCACTTAATGTCTTTATCGTGTTTACGCGTTCTTCT
TGTCTTTGACATCCATATAATTTCAACAATCTTTTTCTCGCTTTCTACGT
GCTACTCTTCCAAGTCGCTCACCTTCTGAGTTTGATTGTGGAGTTTTTCC
TCGAAAACTTAGGCGTGTTTTTGATTTTATGCATACTtgcattcattttt
ttcattttggcgaGTTGTTTGCGCAAGTCTTCGATGCTTGTTTCACGCCA
CGGCCGATTATAAACTCCAGTTTCGCTTGTTTCCTTTTTCGGACCGGGTT
TCAATTATCAGCATAAACTTTCTAACCTCATTCACGTCTCGGCTTGAGTA
GGGGAAATCCTCTTAAGTTTGAGATATTGGACTCTTCTCCAAGACAACAT
AGACCTATACGATTTTTACTGTATGATCAGAAgtttattttcaactcttt
cCCCTTTGTCTTTAGAACAAGGTTATTCGAAAATTTGAGAATGATTCCAC
ACGCACCTGGTGTACAAATGGCTCGTAAGTAGTTTTCGTAGCTTCAACTC
CAAGGAAATGTTGTTAATAATAAAACCCATTTTTAGCCTTAAGCCTTTTG
CTGCCCGATGCATAGAATATTTCCGACCCTGGTAAACGTTAAGGTTTGTG
ATAAATGGCCATTATATCTGAATATTCCCAGTATCCATCACTCGACATCC
CCAGCGCAACTTTTACCActaagttttcttttcaacagCGATTCCAGAAG
ACGGAGCACCGGAGGAGAGCGACGATGACGATAACCCAAAGAACGTTGAT
AACAGAATCTCCAGTAGGTTATCCCCGCAAATCAACTCTGTTAGCTGAGA
AATCTCATTTTCTAGTCCAAGAATGATGCGTTATGCCCAATCTTGATCGC
TAAAAGGAAAGGACCGAAAGTCAATAGTGACCAAGAAAATTTCTTGTTTA
GTACCTTAGCCCAAAATCATGACTTTTCCCATATTGCCATTGTTTTGCTA
ATAAAAACTCTTGTTACACAATAAAGCATTGTTGAGATTATATTTCTACT
TGTAACTATCGCCTGAATACCAAACACGgagtaaaaaaaacaactaaatA
ACCCCTTTTCTTTCCATGTCACAGTTCGTTCATCTGACAAACGTATCGCG
AACGACGGCGAGTACTCTGATTCGGAAGACGAAGGTGAGGGACGCCGTGA
TGAGAAAAATCATAATAAGAGTCCACGCAAGAAGCTACGAACGGCAAGCC
CCATACAAAACATGGTTACTGACGCCACCAAGAAAGAAGAAACACCCAAT
AGCGACGCTAAACCTACCACTGCACCAGCGGCTTCCGTACCTGTTGCAGA
TAAACCACAAAACGGCGCCAAAGCTACCACTGAGGAACCGGTAACGAAAT
CAGAAACGCCAGCTGCTGTTGTTACTACTACTGAAGAGTAAGAATCCATC
TATTTGTTCATATTTACTCATACATTTAACTTTTTAAAGgatctttgaat
tttttgtataatGTTATCTTGCTACATTAAACCCCGAACTTCTATtaatc
gaatctttctatagttCGAACTTGACAAGTTCCTGACAAGGATAAAAACT
ctcaaaatactttctataattcgaatctctctgtaattcgaaaaatacgg
ttccccgttcgagttcgaattactAATATCATGCATGAATTTAATATAAA
CACTGGATGAACAACGCATGAAACGGTGGAGAACGATGattgtatttcca
ttgtttcagaaaacaatcgtgATTCGAGCTGTGTCCGCAAAAGACAACTG
TCCTGGCGGCTCAAAattctctgattttgaaaaatgattaaatgaTCACA
TTTCTAAAAAGTCAATTATCTTTATCTTCTTGATCTTTTACTcgccgaaa
attgaaaaataaaaaaatcaacggATACATGTATTGAATCTGTtgtgaca
aaaacatcattagacaagagaAATTAAACGAAAGGCCTAAAGTGGTGATA
ACTGAATTTTAAGTGGGCAATACCTTTCTAACAATTTTCCGATTAGAGCT
AAGATAGACtagacctctttttaaattacctcacaaacatcacttgcctc
gtattcaaacaattaccgtGGTGATTATgtctatgattttttttgtgaat
aNATTTATAAATTAcctcacaaacatcacttgcctcgtattcaaacaatt
accgtGGTGATTATGTCtatgatttttttgtgaataggaagtagttttaa
taaaatccgctgggactTAATCACCATGGcgataatttcaaaacgaggca
agtgatgtttgtgacgtaatttatgaaaaggtctgaCATTATATCAGAAT
TTAGTGTCTCTGAAGCTTTGTAGaggttaaaaattgaaaatttctggtAT
CAACATTGAATTTCTCATGCATAGCATGTTTTTTGTGTCttttgaaacgt
cataacgacacaTAAATTAGCGATTATTTTGATGTGTTTGCCTCTCTAAA
GAAAACTTTAattctcatttgggaattgaaaNAAATTAGCGATTATTTAA
TACTCTTTTGCAAATTGCCAAATCTTCCAATTTACCTCCCCTCTTTTTGT
CCAAGCCACCCCctttatttgaaatttccacaaacccccttcttttaaat
tcagtaaaattctcaacttttttcaaGGGAGGGTGGGTGCCCACTATTGA
CAAGGCTAGATCATGAGGAATCAATGAAAACCTAGCTTGTTGTTTATCAA
GTCAGTGTCTATATTAAATTCATGGTGATAGTCAACTGTACTTGGAAGTT
CAAATTTTTTAGATTCTCAGccaaaaaccgtttttttttcattgaatttt
ttttttcatcaattctaGGCCAAAGAAAGAGGAGAACACTACGGAAGATA
AGAAAGCTTCTCCGACTGAAGAAAGGTAATCCTTCTTGTTAGTCTAATTT
CATTATGGCACATGAACATCAGATTGCGTTTATTTAAGTCATGCTAACTA
TCATTATGTTCCATTTTCGTTTATTTAGTAAACCAAGCACAGAGGAAGCA
AAGACAACAGTAACTTCTCCTGAAAAGATGGATGTTGATAAATCACCAGA
AAAGAGGTAGAATACTTTACTATACcttttaaataaagaaaacGTAATAT
TTGTCTGTCTATCTgtatttgcttgaaaaaagtaTTTAACTTCTCTTCTA
TTCCCTACTTCCCTAAAGTTTCTATATTCTGGCTGACTGGCTGGTATTAA
ATTATTTGATCGTATATATTCTTTTGGGTGGGTTATTCTGTAGAACTTTT
GGGTCAAATAGTAAATAATAGAAAAATCttttcaggttttttggacgttt
ttaaaaagttcaacACCCATTCAGAAAGGCAGCTATGGTCACGTGCCGTT
TCTGATTGTCATCGTTAACAGTTTTCTGTTATTACTATCTGATATTTGTG
GATAGGTTAATTGACTTATCATTTGCTTTGGTTTTCAGCGCACCTGAGGC
ACAACCTAAGGCTGAGGACAAGAAAACAGGTAAGATTCATCATTCATTAT
CAAGTTTTCGTCCTCAAATTTTGTAACTATTTGCAAGTTGACCGACAATG
AGTAAATACTCGAATAGCGTCTGTTTATTCGGCATGGCATTGTTTAATTG
AACAACAATGAGTTTTCTAAGTAAACAAACAAGTTGTATTTATGAATGGG
CGTCTGAGAGATTTGATCGTAGTATTACTATGGCAAAACATCAATGGAGA
AAGTCTGCTTTTAGAAAATAGCTCAAACCAAGAAATGTAACTACAAGACA
TTTTTAAATCATAGATTTTCCATCGATTGACTGACAATGAAACGtaagtg
ttttgtttttgttttaaacttATAATTGCTTCGAACTTTTTAGAAACTCC
CACAGCGCCCACTGCTGAAGGTGAAACTGCTAAACCAGCGGAAACGACTC
CATCAAGCACTGTCGAGAAGCCAGCAACAGGCGATGATAAAACCTCATGA
GAATAGTTACTTAGCTATAAAATCACATAGACTCAAACAAGAAGAGTCAA
TTGTTTATGGGACGGTATTGTCCTTAGGATTACATCATACACCGTGTTTT
TAAAGCTGTAAATATTGGATGACCACCGATGTACAATGATTGGTCATAAT
GGATGTCAAACATGAAATATAGCCGGACTGAAATCGTGTCAAATTATAAC
TATGAACGATAATCTAGTAGTAGTCTGGAGGAATGGATAACGAATACAAA
TTGACGCATTTTTATAATACCATttttaaatgttaaattatttAATGATA
ATGTTAGGTCGAAGCTATTACTATATCATACCATCAAAATATGGGCATAT
CTGGTTTCACTATAAAAGGGCAAAGACGTTATCTTCGCTGCGTTTTCAAT
CAAATAGTTTATAATTTATACTTTTAACACCATACGGATTTGACAATTTG
GTGGGTTTAATAATTTTGACGACCCATACGTTTTACAAATTCATTTTGTA
AGTACGAGTTTTAATCGTTGCAAATATAACACCATCATTTATAACAAGGA
AA

Coding sequence (CDS) from alignment at sc0000295:5326..11727+

>TCONS_00018246 ID=TCONS_00018246|Name=TCONS_00018246|organism=Clytia hemisphaerica|type=CDS|length=9666bp|location=Sequence derived from alignment at sc0000295:5326..11727+ (Clytia hemisphaerica)
ATGGAGATGTACCAACCAAATGCTGTCGTACTACAATGTGGTGCTGACTC
CTTGTCTGGTGATCGTCTTGGTTGTTTCAATCTCTCTTTGAAAGGACATG
CACAGTGTGTCGACTTTATTAAGAAATTCAACTTGCCACTGTTGATTTTG
GGTGGGGGTGGATATACCATTCGTAATGTTGCTCGATGTTGGACGTATGA
AACCTCAGTTGCATTAGAAGTTGATATTCCAAACGAATTACCTTACAACG
ACTATTTCGAATATTTCGGTCCCGATTTTAAACTCCACATTCAACCTTCC
AACatgcaaaatcaaaacactCCCGAATATCTCGACAAAATCAAAACAAG
GTTATTCGAAAATTTGAGAATGATTCCACACGCACCTGGTGTACAAATGG
CTCCGATTCCAGAAGACGGAGCACCGGAGGAGAGCGACGATGACGATAAC
CCAAAGAACGTTGATAACAGAATCTCCATTCGTTCATCTGACAAACGTAT
CGCGAACGACGGCGAGTACTCTGATTCGGAAGACGAAGGTGAGGGACGCC
GTGATGAGAAAAATCATAATAAGAGTCCACGCAAGAAGCTACGAACGGCA
AGCCCCATACAAAACATGGTTACTGACGCCACCAAGAAAGAAGAAACACC
CAATAGCGACGCTAAACCTACCACTGCACCAGCGGCTTCCGTACCTGTTG
CAGATAAACCACAAAACGGCGCCAAAGCTACCACTGAGGAACCGGTAACG
AAATCAGAAACGCCAGCTGCTGTTGTTACTACTACTGAAGAGCCAAAGAA
AGAGGAGAACACTACGGAAGATAAGAAAGCTTCTCCGACTGAAGAAAGTA
AACCAAGCACAGAGGAAGCAAAGACAACAGTAACTTCTCCTGAAAAGATG
GATGTTGATAAATCACCAGAAAAGAGCGCACCTGAGGCACAACCTAAGGC
TGAGGACAAGAAAACAGAAACTCCCACAGCGCCCACTGCTGAAGGTGAAA
CTGCTAAACCAGCGGAAACGACTCCATCAAGCACTGTCGAGAAGCCAGCA
ACAGGCGATGATAAAACCTCATGAATGGAGATGTACCAACCAAATGCTGT
CGTACTACAATGTGGTGCTGACTCCTTGTCTGGTGATCGTCTTGGTTGTT
TCAATCTCTCTTTGAAAGGACATGCACAGTGTGTCGACTTTATTAAGAAA
TTCAACTTGCCACTGTTGATTTTGGGTGGGGGTGGATATACCATTCGTAA
TGTTGCTCGATGTTGGACGTATGAAACCTCAGTTGCATTAGAAGTTGATA
TTCCAAACGAATTACCTTACAACGACTATTTCGAATATTTCGGTCCCGAT
TTTAAACTCCACATTCAACCTTCCAACatgcaaaatcaaaacactCCCGA
ATATCTCGACAAAATCAAAACAAGGTTATTCGAAAATTTGAGAATGATTC
CACACGCACCTGGTGTACAAATGGCTCCGATTCCAGAAGACGGAGCACCG
GAGGAGAGCGACGATGACGATAACCCAAAGAACGTTGATAACAGAATCTC
CATTCGTTCATCTGACAAACGTATCGCGAACGACGGCGAGTACTCTGATT
CGGAAGACGAAGGTGAGGGACGCCGTGATGAGAAAAATCATAATAAGAGT
CCACGCAAGAAGCTACGAACGGCAAGCCCCATACAAAACATGGTTACTGA
CGCCACCAAGAAAGAAGAAACACCCAATAGCGACGCTAAACCTACCACTG
CACCAGCGGCTTCCGTACCTGTTGCAGATAAACCACAAAACGGCGCCAAA
GCTACCACTGAGGAACCGGTAACGAAATCAGAAACGCCAGCTGCTGTTGT
TACTACTACTGAAGAGCCAAAGAAAGAGGAGAACACTACGGAAGATAAGA
AAGCTTCTCCGACTGAAGAAAGTAAACCAAGCACAGAGGAAGCAAAGACA
ACAGTAACTTCTCCTGAAAAGATGGATGTTGATAAATCACCAGAAAAGAG
CGCACCTGAGGCACAACCTAAGGCTGAGGACAAGAAAACAGAAACTCCCA
CAGCGCCCACTGCTGAAGGTGAAACTGCTAAACCAGCGGAAACGACTCCA
TCAAGCACTGTCGAGAAGCCAGCAACAGGCGATGATAAAACCTCATGAAT
GGAGATGTACCAACCAAATGCTGTCGTACTACAATGTGGTGCTGACTCCT
TGTCTGGTGATCGTCTTGGTTGTTTCAATCTCTCTTTGAAAGGACATGCA
CAGTGTGTCGACTTTATTAAGAAATTCAACTTGCCACTGTTGATTTTGGG
TGGGGGTGGATATACCATTCGTAATGTTGCTCGATGTTGGACGTATGAAA
CCTCAGTTGCATTAGAAGTTGATATTCCAAACGAATTACCTTACAACGAC
TATTTCGAATATTTCGGTCCCGATTTTAAACTCCACATTCAACCTTCCAA
CatgcaaaatcaaaacactCCCGAATATCTCGACAAAATCAAAACAAGGT
TATTCGAAAATTTGAGAATGATTCCACACGCACCTGGTGTACAAATGGCT
CCGATTCCAGAAGACGGAGCACCGGAGGAGAGCGACGATGACGATAACCC
AAAGAACGTTGATAACAGAATCTCCATTCGTTCATCTGACAAACGTATCG
CGAACGACGGCGAGTACTCTGATTCGGAAGACGAAGGTGAGGGACGCCGT
GATGAGAAAAATCATAATAAGAGTCCACGCAAGAAGCTACGAACGGCAAG
CCCCATACAAAACATGGTTACTGACGCCACCAAGAAAGAAGAAACACCCA
ATAGCGACGCTAAACCTACCACTGCACCAGCGGCTTCCGTACCTGTTGCA
GATAAACCACAAAACGGCGCCAAAGCTACCACTGAGGAACCGGTAACGAA
ATCAGAAACGCCAGCTGCTGTTGTTACTACTACTGAAGAGCCAAAGAAAG
AGGAGAACACTACGGAAGATAAGAAAGCTTCTCCGACTGAAGAAAGTAAA
CCAAGCACAGAGGAAGCAAAGACAACAGTAACTTCTCCTGAAAAGATGGA
TGTTGATAAATCACCAGAAAAGAGCGCACCTGAGGCACAACCTAAGGCTG
AGGACAAGAAAACAGAAACTCCCACAGCGCCCACTGCTGAAGGTGAAACT
GCTAAACCAGCGGAAACGACTCCATCAAGCACTGTCGAGAAGCCAGCAAC
AGGCGATGATAAAACCTCATGAATGGAGATGTACCAACCAAATGCTGTCG
TACTACAATGTGGTGCTGACTCCTTGTCTGGTGATCGTCTTGGTTGTTTC
AATCTCTCTTTGAAAGGACATGCACAGTGTGTCGACTTTATTAAGAAATT
CAACTTGCCACTGTTGATTTTGGGTGGGGGTGGATATACCATTCGTAATG
TTGCTCGATGTTGGACGTATGAAACCTCAGTTGCATTAGAAGTTGATATT
CCAAACGAATTACCTTACAACGACTATTTCGAATATTTCGGTCCCGATTT
TAAACTCCACATTCAACCTTCCAACatgcaaaatcaaaacactCCCGAAT
ATCTCGACAAAATCAAAACAAGGTTATTCGAAAATTTGAGAATGATTCCA
CACGCACCTGGTGTACAAATGGCTCCGATTCCAGAAGACGGAGCACCGGA
GGAGAGCGACGATGACGATAACCCAAAGAACGTTGATAACAGAATCTCCA
TTCGTTCATCTGACAAACGTATCGCGAACGACGGCGAGTACTCTGATTCG
GAAGACGAAGGTGAGGGACGCCGTGATGAGAAAAATCATAATAAGAGTCC
ACGCAAGAAGCTACGAACGGCAAGCCCCATACAAAACATGGTTACTGACG
CCACCAAGAAAGAAGAAACACCCAATAGCGACGCTAAACCTACCACTGCA
CCAGCGGCTTCCGTACCTGTTGCAGATAAACCACAAAACGGCGCCAAAGC
TACCACTGAGGAACCGGTAACGAAATCAGAAACGCCAGCTGCTGTTGTTA
CTACTACTGAAGAGCCAAAGAAAGAGGAGAACACTACGGAAGATAAGAAA
GCTTCTCCGACTGAAGAAAGTAAACCAAGCACAGAGGAAGCAAAGACAAC
AGTAACTTCTCCTGAAAAGATGGATGTTGATAAATCACCAGAAAAGAGCG
CACCTGAGGCACAACCTAAGGCTGAGGACAAGAAAACAGAAACTCCCACA
GCGCCCACTGCTGAAGGTGAAACTGCTAAACCAGCGGAAACGACTCCATC
AAGCACTGTCGAGAAGCCAGCAACAGGCGATGATAAAACCTCATGAATGG
AGATGTACCAACCAAATGCTGTCGTACTACAATGTGGTGCTGACTCCTTG
TCTGGTGATCGTCTTGGTTGTTTCAATCTCTCTTTGAAAGGACATGCACA
GTGTGTCGACTTTATTAAGAAATTCAACTTGCCACTGTTGATTTTGGGTG
GGGGTGGATATACCATTCGTAATGTTGCTCGATGTTGGACGTATGAAACC
TCAGTTGCATTAGAAGTTGATATTCCAAACGAATTACCTTACAACGACTA
TTTCGAATATTTCGGTCCCGATTTTAAACTCCACATTCAACCTTCCAACa
tgcaaaatcaaaacactCCCGAATATCTCGACAAAATCAAAACAAGGTTA
TTCGAAAATTTGAGAATGATTCCACACGCACCTGGTGTACAAATGGCTCC
GATTCCAGAAGACGGAGCACCGGAGGAGAGCGACGATGACGATAACCCAA
AGAACGTTGATAACAGAATCTCCATTCGTTCATCTGACAAACGTATCGCG
AACGACGGCGAGTACTCTGATTCGGAAGACGAAGGTGAGGGACGCCGTGA
TGAGAAAAATCATAATAAGAGTCCACGCAAGAAGCTACGAACGGCAAGCC
CCATACAAAACATGGTTACTGACGCCACCAAGAAAGAAGAAACACCCAAT
AGCGACGCTAAACCTACCACTGCACCAGCGGCTTCCGTACCTGTTGCAGA
TAAACCACAAAACGGCGCCAAAGCTACCACTGAGGAACCGGTAACGAAAT
CAGAAACGCCAGCTGCTGTTGTTACTACTACTGAAGAGCCAAAGAAAGAG
GAGAACACTACGGAAGATAAGAAAGCTTCTCCGACTGAAGAAAGTAAACC
AAGCACAGAGGAAGCAAAGACAACAGTAACTTCTCCTGAAAAGATGGATG
TTGATAAATCACCAGAAAAGAGCGCACCTGAGGCACAACCTAAGGCTGAG
GACAAGAAAACAGAAACTCCCACAGCGCCCACTGCTGAAGGTGAAACTGC
TAAACCAGCGGAAACGACTCCATCAAGCACTGTCGAGAAGCCAGCAACAG
GCGATGATAAAACCTCATGAATGGAGATGTACCAACCAAATGCTGTCGTA
CTACAATGTGGTGCTGACTCCTTGTCTGGTGATCGTCTTGGTTGTTTCAA
TCTCTCTTTGAAAGGACATGCACAGTGTGTCGACTTTATTAAGAAATTCA
ACTTGCCACTGTTGATTTTGGGTGGGGGTGGATATACCATTCGTAATGTT
GCTCGATGTTGGACGTATGAAACCTCAGTTGCATTAGAAGTTGATATTCC
AAACGAATTACCTTACAACGACTATTTCGAATATTTCGGTCCCGATTTTA
AACTCCACATTCAACCTTCCAACatgcaaaatcaaaacactCCCGAATAT
CTCGACAAAATCAAAACAAGGTTATTCGAAAATTTGAGAATGATTCCACA
CGCACCTGGTGTACAAATGGCTCCGATTCCAGAAGACGGAGCACCGGAGG
AGAGCGACGATGACGATAACCCAAAGAACGTTGATAACAGAATCTCCATT
CGTTCATCTGACAAACGTATCGCGAACGACGGCGAGTACTCTGATTCGGA
AGACGAAGGTGAGGGACGCCGTGATGAGAAAAATCATAATAAGAGTCCAC
GCAAGAAGCTACGAACGGCAAGCCCCATACAAAACATGGTTACTGACGCC
ACCAAGAAAGAAGAAACACCCAATAGCGACGCTAAACCTACCACTGCACC
AGCGGCTTCCGTACCTGTTGCAGATAAACCACAAAACGGCGCCAAAGCTA
CCACTGAGGAACCGGTAACGAAATCAGAAACGCCAGCTGCTGTTGTTACT
ACTACTGAAGAGCCAAAGAAAGAGGAGAACACTACGGAAGATAAGAAAGC
TTCTCCGACTGAAGAAAGTAAACCAAGCACAGAGGAAGCAAAGACAACAG
TAACTTCTCCTGAAAAGATGGATGTTGATAAATCACCAGAAAAGAGCGCA
CCTGAGGCACAACCTAAGGCTGAGGACAAGAAAACAGAAACTCCCACAGC
GCCCACTGCTGAAGGTGAAACTGCTAAACCAGCGGAAACGACTCCATCAA
GCACTGTCGAGAAGCCAGCAACAGGCGATGATAAAACCTCATGAATGGAG
ATGTACCAACCAAATGCTGTCGTACTACAATGTGGTGCTGACTCCTTGTC
TGGTGATCGTCTTGGTTGTTTCAATCTCTCTTTGAAAGGACATGCACAGT
GTGTCGACTTTATTAAGAAATTCAACTTGCCACTGTTGATTTTGGGTGGG
GGTGGATATACCATTCGTAATGTTGCTCGATGTTGGACGTATGAAACCTC
AGTTGCATTAGAAGTTGATATTCCAAACGAATTACCTTACAACGACTATT
TCGAATATTTCGGTCCCGATTTTAAACTCCACATTCAACCTTCCAACatg
caaaatcaaaacactCCCGAATATCTCGACAAAATCAAAACAAGGTTATT
CGAAAATTTGAGAATGATTCCACACGCACCTGGTGTACAAATGGCTCCGA
TTCCAGAAGACGGAGCACCGGAGGAGAGCGACGATGACGATAACCCAAAG
AACGTTGATAACAGAATCTCCATTCGTTCATCTGACAAACGTATCGCGAA
CGACGGCGAGTACTCTGATTCGGAAGACGAAGGTGAGGGACGCCGTGATG
AGAAAAATCATAATAAGAGTCCACGCAAGAAGCTACGAACGGCAAGCCCC
ATACAAAACATGGTTACTGACGCCACCAAGAAAGAAGAAACACCCAATAG
CGACGCTAAACCTACCACTGCACCAGCGGCTTCCGTACCTGTTGCAGATA
AACCACAAAACGGCGCCAAAGCTACCACTGAGGAACCGGTAACGAAATCA
GAAACGCCAGCTGCTGTTGTTACTACTACTGAAGAGCCAAAGAAAGAGGA
GAACACTACGGAAGATAAGAAAGCTTCTCCGACTGAAGAAAGTAAACCAA
GCACAGAGGAAGCAAAGACAACAGTAACTTCTCCTGAAAAGATGGATGTT
GATAAATCACCAGAAAAGAGCGCACCTGAGGCACAACCTAAGGCTGAGGA
CAAGAAAACAGAAACTCCCACAGCGCCCACTGCTGAAGGTGAAACTGCTA
AACCAGCGGAAACGACTCCATCAAGCACTGTCGAGAAGCCAGCAACAGGC
GATGATAAAACCTCATGAATGGAGATGTACCAACCAAATGCTGTCGTACT
ACAATGTGGTGCTGACTCCTTGTCTGGTGATCGTCTTGGTTGTTTCAATC
TCTCTTTGAAAGGACATGCACAGTGTGTCGACTTTATTAAGAAATTCAAC
TTGCCACTGTTGATTTTGGGTGGGGGTGGATATACCATTCGTAATGTTGC
TCGATGTTGGACGTATGAAACCTCAGTTGCATTAGAAGTTGATATTCCAA
ACGAATTACCTTACAACGACTATTTCGAATATTTCGGTCCCGATTTTAAA
CTCCACATTCAACCTTCCAACatgcaaaatcaaaacactCCCGAATATCT
CGACAAAATCAAAACAAGGTTATTCGAAAATTTGAGAATGATTCCACACG
CACCTGGTGTACAAATGGCTCCGATTCCAGAAGACGGAGCACCGGAGGAG
AGCGACGATGACGATAACCCAAAGAACGTTGATAACAGAATCTCCATTCG
TTCATCTGACAAACGTATCGCGAACGACGGCGAGTACTCTGATTCGGAAG
ACGAAGGTGAGGGACGCCGTGATGAGAAAAATCATAATAAGAGTCCACGC
AAGAAGCTACGAACGGCAAGCCCCATACAAAACATGGTTACTGACGCCAC
CAAGAAAGAAGAAACACCCAATAGCGACGCTAAACCTACCACTGCACCAG
CGGCTTCCGTACCTGTTGCAGATAAACCACAAAACGGCGCCAAAGCTACC
ACTGAGGAACCGGTAACGAAATCAGAAACGCCAGCTGCTGTTGTTACTAC
TACTGAAGAGCCAAAGAAAGAGGAGAACACTACGGAAGATAAGAAAGCTT
CTCCGACTGAAGAAAGTAAACCAAGCACAGAGGAAGCAAAGACAACAGTA
ACTTCTCCTGAAAAGATGGATGTTGATAAATCACCAGAAAAGAGCGCACC
TGAGGCACAACCTAAGGCTGAGGACAAGAAAACAGAAACTCCCACAGCGC
CCACTGCTGAAGGTGAAACTGCTAAACCAGCGGAAACGACTCCATCAAGC
ACTGTCGAGAAGCCAGCAACAGGCGATGATAAAACCTCATGAATGGAGAT
GTACCAACCAAATGCTGTCGTACTACAATGTGGTGCTGACTCCTTGTCTG
GTGATCGTCTTGGTTGTTTCAATCTCTCTTTGAAAGGACATGCACAGTGT
GTCGACTTTATTAAGAAATTCAACTTGCCACTGTTGATTTTGGGTGGGGG
TGGATATACCATTCGTAATGTTGCTCGATGTTGGACGTATGAAACCTCAG
TTGCATTAGAAGTTGATATTCCAAACGAATTACCTTACAACGACTATTTC
GAATATTTCGGTCCCGATTTTAAACTCCACATTCAACCTTCCAACatgca
aaatcaaaacactCCCGAATATCTCGACAAAATCAAAACAAGGTTATTCG
AAAATTTGAGAATGATTCCACACGCACCTGGTGTACAAATGGCTCCGATT
CCAGAAGACGGAGCACCGGAGGAGAGCGACGATGACGATAACCCAAAGAA
CGTTGATAACAGAATCTCCATTCGTTCATCTGACAAACGTATCGCGAACG
ACGGCGAGTACTCTGATTCGGAAGACGAAGGTGAGGGACGCCGTGATGAG
AAAAATCATAATAAGAGTCCACGCAAGAAGCTACGAACGGCAAGCCCCAT
ACAAAACATGGTTACTGACGCCACCAAGAAAGAAGAAACACCCAATAGCG
ACGCTAAACCTACCACTGCACCAGCGGCTTCCGTACCTGTTGCAGATAAA
CCACAAAACGGCGCCAAAGCTACCACTGAGGAACCGGTAACGAAATCAGA
AACGCCAGCTGCTGTTGTTACTACTACTGAAGAGCCAAAGAAAGAGGAGA
ACACTACGGAAGATAAGAAAGCTTCTCCGACTGAAGAAAGTAAACCAAGC
ACAGAGGAAGCAAAGACAACAGTAACTTCTCCTGAAAAGATGGATGTTGA
TAAATCACCAGAAAAGAGCGCACCTGAGGCACAACCTAAGGCTGAGGACA
AGAAAACAGAAACTCCCACAGCGCCCACTGCTGAAGGTGAAACTGCTAAA
CCAGCGGAAACGACTCCATCAAGCACTGTCGAGAAGCCAGCAACAGGCGA
TGATAAAACCTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010257XLOC_010257Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018246-exon-sc0000295-1491911889:5326..5497TCONS_00018246-exon-sc0000295-1491911889:5326..5497Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1510915933:5326..5497TCONS_00018246-exon-sc0000295-1510915933:5326..5497Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1575043694:5326..5497TCONS_00018246-exon-sc0000295-1575043694:5326..5497Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1491911889:5908..6157TCONS_00018246-exon-sc0000295-1491911889:5908..6157Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1510915933:5908..6157TCONS_00018246-exon-sc0000295-1510915933:5908..6157Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1575043694:5908..6157TCONS_00018246-exon-sc0000295-1575043694:5908..6157Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1491911889:6493..6601TCONS_00018246-exon-sc0000295-1491911889:6493..6601Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1510915933:6493..6601TCONS_00018246-exon-sc0000295-1510915933:6493..6601Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1575043694:6493..6601TCONS_00018246-exon-sc0000295-1575043694:6493..6601Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1491911889:7641..7699TCONS_00018246-exon-sc0000295-1491911889:7641..7699Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1510915933:7641..7699TCONS_00018246-exon-sc0000295-1510915933:7641..7699Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1575043694:7641..7699TCONS_00018246-exon-sc0000295-1575043694:7641..7699Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1491911889:7914..7988TCONS_00018246-exon-sc0000295-1491911889:7914..7988Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1510915933:7914..7988TCONS_00018246-exon-sc0000295-1510915933:7914..7988Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1575043694:7914..7988TCONS_00018246-exon-sc0000295-1575043694:7914..7988Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1491911889:8300..8612TCONS_00018246-exon-sc0000295-1491911889:8300..8612Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1510915933:8300..8612TCONS_00018246-exon-sc0000295-1510915933:8300..8612Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1575043694:8300..8612TCONS_00018246-exon-sc0000295-1575043694:8300..8612Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1491911889:10044..10100TCONS_00018246-exon-sc0000295-1491911889:10044..10100Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1510915933:10044..10100TCONS_00018246-exon-sc0000295-1510915933:10044..10100Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1575043694:10044..10100TCONS_00018246-exon-sc0000295-1575043694:10044..10100Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1491911889:10204..10281TCONS_00018246-exon-sc0000295-1491911889:10204..10281Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1510915933:10204..10281TCONS_00018246-exon-sc0000295-1510915933:10204..10281Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1575043694:10204..10281TCONS_00018246-exon-sc0000295-1575043694:10204..10281Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1491911889:10664..10704TCONS_00018246-exon-sc0000295-1491911889:10664..10704Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1510915933:10664..10704TCONS_00018246-exon-sc0000295-1510915933:10664..10704Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1575043694:10664..10704TCONS_00018246-exon-sc0000295-1575043694:10664..10704Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1491911889:11069..11727TCONS_00018246-exon-sc0000295-1491911889:11069..11727Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1510915933:11069..11727TCONS_00018246-exon-sc0000295-1510915933:11069..11727Clytia hemisphaericaexon
TCONS_00018246-exon-sc0000295-1575043694:11069..11727TCONS_00018246-exon-sc0000295-1575043694:11069..11727Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018246-proteinTCONS_00018246-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:5326..11727 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
314.677	309.534	586.092	581.755	507.698	405.574	178.951	186.7	130.172	132.981	123.809	112.586	136.408	139.659	117.306	116.29	167.137	155.738	48.106	47.141	83.3596	81.4867	153.684	154.039	146.925	167.072	67.754	55.9957	86.5864	87.2924
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023801His_deacetylse_dom
Blast
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BLAST of TCONS_00018246 vs. Swiss-Prot (Human)
Match: HDAC1 (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 1.034e-110
Identity = 160/205 (78.05%), Postives = 184/205 (89.76%), Query Frame = 2 
Query:   77 QDIGAGKGKYYAVNFPLRDGIDDDAYEKIFNPVLTKVMEMYQPNAVVLQCGADSLSGDRLGCFNLSLKGHAQCVDFIKKFNLPLLILGGGGYTIRNVARCWTYETSVALEVDIPNELPYNDYFEYFGPDFKLHIQPSNMQNQNTPEYLDKIKTRLFENLRMIPHAPGVQMAPIPEDGAPEESDDDDNPKNVDNRISIRSSDKRIA 691
            +DIGAGKGKYYAVN+PLRDGIDD++YE IF PV++KVMEM+QP+AVVLQCG+DSLSGDRLGCFNL++KGHA+CV+F+K FNLP+L+LGGGGYTIRNVARCWTYET+VAL+ +IPNELPYNDYFEYFGPDFKLHI PSNM NQNT EYL+KIK RLFENLRM+PHAPGVQM  IPED A  E   D++  + D RISI SSDKRIA
Sbjct:  212 RDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPED-AIPEESGDEDEDDPDKRISICSSDKRIA 415
The following BLAST results are available for this feature:
BLAST of TCONS_00018246 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDAC11.034e-11078.05Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=... [more]
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