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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00017148-protein ID=TCONS_00017148-protein|Name=TCONS_00017148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1054bp
MKGKHCTVPDPCEPDKCAPNGECIPNISDEDATYSCKCKGRYIGKLCKEC
ACQNSALAASMKDQNRPQPYCDAEGKCRCDGIYLWERNLGFCKAHIDPGD
NDPCLPNPCKCGAQCIPNKEKQTFSCACPARCTGRTCESTLYCEDKKFQG
LNPCKNGGTCITYEPAFNTYWCKCPPGFYGQNCTQHVTTTPAPDRHNCIP
NPCRNGGGCVDLGDQGYDCRCSAEFTGPHCEIDRCKDCDDNAHCYAGECI
CKHGFTGNGYECVRKCKKPCGEYQICSQGVCECMPGYYLHNNFCLHIPIE
EETDSFTGHHGGGTGGQGGGTGGTGGGTGGRTGGNTLPTSKPHTTTTTTT
TTTTTTTTKSPHVRPDPVKPGGGGDNGGGGPGEGEGGGTPGSENGGGGDS
GGAGGGGAPGSKEEEQSHYPSPVKPVDPNKGGGGDGSPLAPPTESGDKGP
PGSSGGVAPPNGEEPSGGKGPPGSQDEKEVEEGRPPEEEVVEPPETTEDN
GVPPAEVPSLEKEEEDQKPPPLPPPKEPEEEKAEPPLPSEEKKPPPSEPE
KPPPEKEAEPPSNPAPPSNPTPEKPTKPAPKPPPGETSKPPVDETSKPPI
EETKLPVETIKPSGGGPPGSGPGSSGGPPTGGGSPPTSGGGGPPGSRRHD
DVGVSAAEEHLLKEEERKEKEQKKKVKGFTKPPEGDHFKVYITDGDSEDD
KTTKPFHTSQPKQPIKPHNTLVEKHINEMKYRDLDKEQRNGDYRKFHGRY
TPTISGGDKLQHGALPTLQHYIDEMSKEELKLNHGVETSAHQEKIESLER
KDPQDEEENRILEEETIYKNLKQSEKARQKKAHQKKIEHEVLTEEEKMFR
AMHHTQNKNVESITKVGVPLMVKFTDQKQRPVKAETSTQKVSNVITDVQS
TDQDAKGSSDLVTVTSQNLAANAPEKATDPPVGSSKIKSEAATQGPAKAE
ADKWGAKSPDDVFNVADSVPTEASLDSYEKNLVNNHKKGSKGDSKNDIIE
LLKQYGKLKDEVTELTTDGEGSMLDFNGNKKSEPLLAGKRHTRKNKNKTT
VKVQ Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 795..815 |
| None | No IPR available | COILS | Coil | Coil | coord: 998..1018 |
| None | No IPR available | COILS | Coil | Coil | coord: 654..674 |
| None | No IPR available | GENE3D | 2.10.25.10 | | coord: 95..141
e-value: 1.6E-6
score: 27.5
coord: 190..234
e-value: 1.0E-10
score: 40.9 |
| None | No IPR available | GENE3D | 2.90.20.10 | | coord: 236..314
e-value: 0.041
score: 13.3 |
| None | No IPR available | GENE3D | 2.10.25.10 | | coord: 142..189
e-value: 5.0E-9
score: 35.4 |
| None | No IPR available | GENE3D | 2.10.25.10 | | coord: 1..51
e-value: 4.5E-5
score: 22.7 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1018..1054 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 785..813 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 305..762 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 900..959 |
| None | No IPR available | CDD | cd00054 | EGF_CA | coord: 152..184
e-value: 1.55782E-4
score: 39.5422 |
| None | No IPR available | CDD | cd00054 | EGF_CA | coord: 200..231
e-value: 2.0249E-4
score: 39.157 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 195..234 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 152..187 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 10..51 |
| IPR000742 | EGF-like domain | SMART | SM00181 | egf_5 | coord: 234..263
e-value: 92.0
score: 5.0
coord: 11..48
e-value: 0.032
score: 23.4
coord: 103..138
e-value: 1.8
score: 17.6
coord: 265..295
e-value: 24.0
score: 11.5
coord: 197..231
e-value: 0.0099
score: 25.1
coord: 142..184
e-value: 6.6E-6
score: 35.6 |
| IPR000742 | EGF-like domain | PFAM | PF00008 | EGF | coord: 152..181
e-value: 2.1E-8
score: 34.2 |
| IPR000742 | EGF-like domain | PROSITE | PS50026 | EGF_3 | coord: 139..184
score: 17.376 |
| IPR000742 | EGF-like domain | PROSITE | PS50026 | EGF_3 | coord: 194..231
score: 20.01 |
| IPR000742 | EGF-like domain | PROSITE | PS50026 | EGF_3 | coord: 8..48
score: 14.29 |
| IPR000742 | EGF-like domain | PROSITE | PS50026 | EGF_3 | coord: 100..138
score: 12.657 |
| IPR001881 | EGF-like calcium-binding domain | SMART | SM00179 | egfca_6 | coord: 194..231
e-value: 0.025
score: 14.7
coord: 100..138
e-value: 0.35
score: 5.5
coord: 143..184
e-value: 0.61
score: 3.6 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS00022 | EGF_1 | coord: 219..230 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS01186 | EGF_2 | coord: 172..183 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS00022 | EGF_1 | coord: 36..47 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS00022 | EGF_1 | coord: 126..137 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS00022 | EGF_1 | coord: 172..183 |
Blast
BLAST of TCONS_00017148-protein vs. Swiss-Prot (Human)
Match: DLL3 (Delta-like protein 3 OS=Homo sapiens GN=DLL3 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.157e-19 Identity = 78/207 (37.68%), Postives = 92/207 (44.44%), Query Frame = 0
Query: 103 PCLPNPCKCGAQCIPNKEKQTFSCACPARCTGRTCE-STLYCEDKKFQGLNPCKNGGTCITYEPAFNTYWCKCPPGFYGQNCTQHVTTTPAPDRHNCIPNPCRNGGGCVDLGDQGYDCRCSAEFTGPHCE--IDRC--KDCDDNAHCYAG----ECICKHGFTGNGYECVRKCK--------KPCGE----YQICSQGVCECMPGYY 288
PC NPC G C ++ ++F C CP G CE S + C D PC NGG C+ + Y C CPPGF G NC + V DR C PCRNGG C+DLG CRC A F GP CE +D C + C + C G C C GF G R C+ +PC Y S VC C PGY
Sbjct: 277 PCDGNPCANGGSC--SETPRSFECTCPRGFYGLRCEVSGVTCAD------GPCFNGGLCVGGADPDSAYICHCPPGFQGSNCEKRV------DR--CSLQPCRNGGLCLDLG-HALRCRCRAGFAGPRCEHDLDDCAGRACANGGTCVEGGGAHRCSCALGFGG------RDCRERADPCAARPCAHGGRCYAHFSGLVCACAPGYM 460
The following BLAST results are available for this feature:
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