|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017148 ID=TCONS_00017148|Name=TCONS_00017148|organism=Clytia hemisphaerica|type=transcript|length=6420bpRun BLAST on NCBI protein sequence of TCONS_00017148-protein >TCONS_00017148-protein ID=TCONS_00017148-protein|Name=TCONS_00017148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1054bp MKGKHCTVPDPCEPDKCAPNGECIPNISDEDATYSCKCKGRYIGKLCKECRun BLAST on NCBI transcript from alignment at sc0000260:108835..135270+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017148 ID=TCONS_00017148|Name=TCONS_00017148|organism=Clytia hemisphaerica|type=transcript|length=26436bp|location=Sequence derived from alignment at sc0000260:108835..135270+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000260:108835..135270+ >TCONS_00017148 ID=TCONS_00017148|Name=TCONS_00017148|organism=Clytia hemisphaerica|type=CDS|length=37980bp|location=Sequence derived from alignment at sc0000260:108835..135270+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017148 vs. Swiss-Prot (Human)
Match: NOTC2 (Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2 PE=1 SV=3) HSP 1 Score: 169.859 bits (429), Expect = 1.064e-59 Identity = 134/383 (34.99%), Postives = 186/383 (48.56%), Query Frame = 3
Query: 1584 TNPCENGGIFAPMP-NEKHVCICSEKYMGKNC-EDINYCY---HRPCKHCGKCQVTRAWPHYKCECCKKYSGRHCEIR-NPCEPNPCLNMGECTHDGKTPSCICRPKFKGQFCG-DVNNCNPNPCLNGATCMEKEGQGNFACLCPPSWIGTICNTP-SQCASSPCLNGGTCREDGGSFQCICLEGFYGKTCSDRL--CYPNPCANGGTCVDDKGEFHCVCPLWARGRTCLD-VSPCLMNPCRNAAKCIDKYSGYRWVLGPTEYYCMCQPPYYGSHCQINRCQQCDE----HAHC----NVDRCECDEGYRGDGKVCIRIPHPCHPNPCLNSGVCVDEGNGHYHCLCKEHYKPPNCHV-VDICDPNPCNGGKCVPGGSEGYRXI 2672
+NPC G + P N +++C C + Y G +C ED++ C PC+H GKC T H CEC K Y+G CE+ N C +PC N C +C+C P FKG C ++N C NPC+N C++K + F CLCPP + G +C C+S+PCLNG C + ++C C GF G C + + C P+PC +G C D + C+C G C D + C +PC N +CID +GY+ C CQP G +C+IN C H C N C C G+ G + C C NPC C++ NG + C+C E P+C+ V+ C NPC G C GG GY+ +
Sbjct: 381 SNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFH--CECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNR--FQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTGVLCEENIDNCDPDPCHHG-QCQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRCIDLVNGYQ---------CNCQPGTSGVNCEINF-DDCASNPCIHGICMDGINRYSCVCSPGFTG--QRCNIDIDECASNPCRKGATCINGVNG-FRCICPEGPHHPSCYSQVNECLSNPCIHGNCT-GGLSGYKCL 744 HSP 2 Score: 82.4185 bits (202), Expect = 1.064e-59 Identity = 100/344 (29.07%), Postives = 133/344 (38.66%), Query Frame = 2
Query: 2675 CDPNPCNGGKCVPGGSEGYRCEVCPEGMKGKHCTV-PDPCEPDKCAPNGECIPNISDEDATYSCKCKGRYIGKLCKECACQNSALAASMKDQNRPQPYCDAEGKCRCDGIYLWERNLGFCKAHIDPGDNDPCLPNPCKCGAQCIPNKEKQTFSCACPARCTGRTCESTL-YCEDKKFQGLNPCKNGGTCITYEPAFNTYWCKCPPGFYGQNCTQHVTTTPAPDRHNCIPNPCRNGGGCVDLGDQGYDCRCSAEFTGPHCEIDR-------CKD---CDDNAHCYAGECICKHGFTG-----NGYECVRKCKKPCGEYQICSQGV----CECMPGYYLHNNFCLH 3643
C NPC G GYRC C +G KG +C V D C + C G C +IS Y+C C Y GK C+ + LA PC PNPC+ A C + ++++C C G+ C + C K PC N G C + +Y C+CPPGF G +C + D +C+ NPC+NGG C+D G + C C FTG C+ D CK+ C D + Y C C+ GF G N EC + C C G+ C C G+ +FCLH
Sbjct: 761 CLSNPCQNGGTCDNLVNGYRC-TCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISG----YTCHCVLPYTGKNCQ------TVLA--------------------------------------------PCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISK------PCMNHGLCHNTQ---GSYMCECPPGFSGMDCEE--------DIDDCLANPCQNGGSCMD-GVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYT--CKCQAGFDGVHCENNINECT---ESSCFNGGTCVDGINSFSCLCPVGFT--GSFCLH 1024 HSP 3 Score: 179.104 bits (453), Expect = 1.368e-44 Identity = 135/375 (36.00%), Postives = 179/375 (47.73%), Query Frame = 3
Query: 1584 TNPCENGGIFAPMPNEKHVCICSEKYMGKNCE-DINYCYHRPCKHCGKCQVTRAWPHYKCECCKKYSGRHCEIR-NPCEPNPCLNMGECTHDGKTPSCICRPKFKGQFCGDVNN-CNPNPCLNGATCMEKEGQGNFACLCPPSWIGTICNTP-SQCASSPCLNGGTCREDGGSFQCICLEGFYGKTCSDRL--CYPNPCANGGTCVDDKGEFHCVCPLWARGRTC-LDVSPCLMNPCRNAAKCIDKYSGYRWVLGPTEYYCMCQPPYYGSHCQ--INRCQQ--CDEHAHC----NVDRCECDEGYRGDGKVCIRIPHPCHPNPCLNSGVCVDEGNGHYHCLCKEHYKPPNCH-VVDICDPNPC-NGGKCVPGGSE 2657
+NPC +G + K C+C ++G NCE D N C PC++ G C Y+C C K + G +C++ + C NPCLN G C D +C C + G+ C V C+PNPC N A C E ++ CLC P W G C +C S PC+N G C GS+ C C GF G C + + C NPC NGG+C+D F C+C G C D++ CL PC+N C D + Y C CQ + G HC+ IN C + C C N C C G+ G C+ + C +PCLN G CVD G G Y C C Y NC +V++C +PC N G CV +E
Sbjct: 726 SNPCIHGNCTGGLSGYK--CLCDAGWVGINCEVDKNECLSNPCQNGGTCD--NLVNGYRCTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISGYTCHCVLPYTGKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQGSYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDYVNSYT---------CKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFSCLCPVGFT--GSFCLHEINECSSHPCLNEGTCVD-GLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAE 1084 HSP 4 Score: 163.31 bits (412), Expect = 8.186e-40 Identity = 129/369 (34.96%), Postives = 170/369 (46.07%), Query Frame = 3
Query: 1587 NPCENGGIFAPMPN-EKHVCICSEKYMGKNCE-DINYCYHRPCKHCGKCQVTRAWPHYKCECCKKYSGRHCEIR-NPCEPNPCLNMGECTHDGKTPSCICRPKFKGQFC-GDVNNCNPNPCLNGATCMEKEGQGNFACLCPPSWIGTIC-NTPSQCASSPCLNGGTCREDGGSFQCICLEGFYGKTCSDRL--CYPNPCANGGTCVDDKGEFHCVCPLWARGRTCLD-VSPCLMNPCRNAAKCIDKYSGYRWVLGPTEYYCMCQPPYYGSHCQINRCQQCDEHAHCNVDRCECDEGYRGDGKVCIRIPHPCHPNPCLNSGVCVDEGNGHYHCLCKEHYKPPNCH-VVDICDPNPCNGGKCVPGGSEGYR 2666
NPCEN + PN E + C+C+ + G+ C DI+ C +PC + G C T+ Y CEC +SG CE + C NPC N G C T SC+C P F G C D+N C PC NG TC + ++ C C + G C N ++C S C NGGTC + SF C+C GF G C + C +PC N GTCVD G + C CPL G+ C V+ C +PC+N C+ K + E C+C + G A+C+V CD G + + H C +SGVC++ GN HY C C Y C +D C NPC G GYR
Sbjct: 840 NPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLCHNTQG--SYMCECPPGFSGMDCEEDIDDCLANPCQNGGSCMDGVNTFSCLCLPGFTGDKCQTDMNECLSEPCKNGGTCSDY--VNSYTCKCQAGFDGVHCENNINECTESSCFNGGTCVDGINSFSCLCPVGFTGSFCLHEINECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKA---------ESQCLCPSGWAG--------------AYCDVPNVSCDIAASRRG---VLVEHLCQ-----HSGVCINAGNTHY-CQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYR 1172 HSP 5 Score: 162.155 bits (409), Expect = 1.717e-39 Identity = 136/446 (30.49%), Postives = 192/446 (43.05%), Query Frame = 3
Query: 1530 GYRVDKVSHHFDHRVTAETNPCENGGIFAPMPNEKHVCICSEKYMGKNCE-DINYCYHRPCKHCGKCQVTRAWPHYKCECCKKYSGRHCEIR-NPCEPNPCLNMGECTHDGKTPSCICRPKFKGQFCG-DVNNCNPNPCLNGATCME-----------------------------------KEGQGNFACLCPPSWIGTIC-NTPSQCASSPCLNGGTCREDGGSFQCICLEGFYGKTCSDRL--CYPNPCANGGTCVDDKGEFHCVCPLWARGRTC-LDVSPCLMNPCRNAAKCIDKYSGYRWVL----------------------------GPTEYYCMCQPPYYGSHCQINR-------CQQ---CDEHAHCNVDRCECDEGYRGDGKVCIRIPHPCHPNPCLNSGVCVDEGNGHYHCLCKEHYKPPNCH-VVDICDPNPC 2624
GY+ + D A +NPCE+ G H C C + Y G CE DIN C+ PC++ C + C C + G HCE+ N C+ NPC+N G+C C+C P F G C D+++C+ PCLNGA C++ ++G ++ C+C P ++G IC + +C SSPCLN G C + +QC C G G C C NPC + G C+D + CVC G+ C +D+ C NPCR A CI+ +G+R + G + Y C+C + G +C++++ CQ CD N RC C +G++G C C NPCLN G C D+ +G Y C C Y NC V+ C PNPC
Sbjct: 406 GYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFH-CECLKGYAGPRCEMDINECHSDPCQNDATC--LDKIGGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTGVLCEENIDNCDPDPCHHGQCQDGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGVNCEINFDDCASNPCIH-GICMDGINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLV--NGYRCTCKKGFKGYN--CQVNIDECASNPCLNQGTCFDDISG-YTCHCVLPYTGKNCQTVLAPCSPNPC 842 HSP 6 Score: 150.984 bits (380), Expect = 4.897e-36 Identity = 125/377 (33.16%), Postives = 182/377 (48.28%), Query Frame = 3
Query: 1584 TNPCENGGIFAPMPNEKHVCICSEKYMGKNCE-DINYC-YHRPCKHCGKCQVTRAWPHYKCECCKKYSGRHCE-IRNPCEPNPCLNMGECTHDGK-TPSCICRPKFKGQFCG-DVNNCNPNPCLNGATCMEKEGQGNFACLCPPSWIGTICNTP-SQCASSP--CLNGGTCREDGGSFQCICLEGFYGKTCSDRL--CYPNPCANGGTCVDDKGEFHCVCPLWARGRTCLDVSPCLMNPCRNAAKC-IDKYSGYRWVLGPTEYYCMCQPPYYGSHC--QINRCQQCD----EHAH--CNVD---RCECDEGYRGDGKVCIRIPHPCHPNPCLNSGVCVDEGNGHYHCLCKEHYKPPNCHV-VDICDPNPC-NGGKCV 2642
++PC NG + N+ C C + G+ CE D+N C C+H G C Y+C+C + ++G++C+ + PC P+PC+N G C G T C C P F+G C ++++C + C NG C++ G + C CPP W G C +C P C NGGTC G + C+C+ G+ G CS+ + C C G TC+D F C+CP G C C+ NPC A C + +G +Y C C Y G+ C ++ C + EHA N D CEC +GY G C + CH +PC N C+D+ G + CLC +K +C + ++ C NPC N G+CV
Sbjct: 150 SHPCANGSTCTTVANQ-FSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLPG--SYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVD--GVNTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTCANRNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDRVASFSCMCPEGKAGLLCHLDDACISNPCHKGALCDTNPLNG--------QYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYA--GPRCEMDINECHSDPCQNDATCLDKIGG-FTCLCMPGFKGVHCELEINECQSNPCVNNGQCV 510 HSP 7 Score: 148.288 bits (373), Expect = 3.094e-35 Identity = 135/393 (34.35%), Postives = 188/393 (47.84%), Query Frame = 3
Query: 1548 VSHHFDHRVTAETNPCENGGI-FAPMPNEKHVCICSEKYMGKNCEDINY--CY-HRPCKHCGKCQVTRAWPHYKCECCKKYSGRHCEIRNPCEPNPCLNMGECTHDGKTPSCICRPKFKGQFC-GDVNNCN-PNPCLNGATCMEKEGQGNFACLCPPSWIGTICNTP-SQCASSPCLNGGTCREDGG-SFQCICLEGFYGKTCSDRL--CYPNPCANGGTCVDDKGEFHCVCPLWARGRTCL-DVSPCLMNP--CRNAAKCIDKYSGYRWVLGPTEYYCMCQPPYYGSHCQ--INRC--QQCDEHAHCNVDR-----CECDEGYRGDGKVCIRIPHPCHPNPCLNSGVC-VDEGNGHYHCLCKEHYKPPNC-HVVDIC---DPNPC-NGGKCV 2642
+ + HR E N C+NGG A K C C+ + G++C+ C+ RPC + G C + + Y+C C ++G+ C+ + C +PC N CT SC C F GQ C DVN C+ P C +G TC+ G++ C CP + G C++ CA SPC+NGGTCR+ G +F+C CL GF G TC + C + C NGG CVD ++C CP G+ C DV CL+ P C+N C ++ GY C+C + G C I+ C C + C +DR C C EG G + + C NPC +C + NG Y C C + YK +C VD C + NPC + GKCV
Sbjct: 58 LGEYCQHRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDCQYSTSHPCFVSRPCLNGGTCHML-SRDTYECTCQVGFTGKECQWTDACLSHPCANGSTCTTVANQFSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLP--GSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVDGVNTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTCANRNGGYG---------CVCVNGWSGDDCSENIDDCAFASCTPGSTC-IDRVASFSCMCPEGKAG---LLCHLDDACISNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCV 434 HSP 8 Score: 147.517 bits (371), Expect = 4.753e-35 Identity = 119/376 (31.65%), Postives = 178/376 (47.34%), Query Frame = 3
Query: 1587 NPCENGGIFAPMPNEKHVCICSEKYMGKNCE-DINYCYHRPCKHCGKCQVTRAWPHYKCECCKKYSGRHC-EIRNPC--EPNPCLNMGECTHDGKTPSCICRPKFKGQFCGD-VNNCNPNPCLNGATCMEKEGQGNFACLCPPSWIGTICNTPSQCASSPCLNGGTCRED--GGSFQCICLEGFYGKTCSD-----RLCYPNPCANGGTCVDDKGEFHCVCPLWARGRTC-LDVSPCLMNPCRNAAKCIDKYSGYRWVLGPTEYYCMCQPPYYGSHC--QINRCQQ--CDEHAHC----NVDRCECDEGYRGDGKVCIRIPHPCHPNPCLNSGVCVDEGNGHYHCLCKEHYKPPNCHV-VDICDPNPCNGGKCVPG 2648
+PC NGG + C C + G CE +I+ C + C++ G C Y C C +++G+ C E + C +PN C N G C + C+C + G C + +++C C G+TC+++ +F+C+CP G +C+ C S+PC G C + G + C C +G+ G C++ + NPC + G CV+ G FHC C G C +D++ C +PC+N A C+DK G+ C+C P + G HC +IN CQ C + C N +C C G+ G VC C PCLN C+D NG Y C C + C +D CDP+PC+ G+C G
Sbjct: 228 SPCVNGGTCRQTGDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVC--VDGVNTYNCRCPPQWTGQFCTEDVDECLLQPNACQNGGTCANRNGGYGCVCVNGWSGDDCSENIDDCAFASCTPGSTCIDR--VASFSCMCPEGKAGLLCHLDDACISNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDKIGGFT---------CLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFT--GPVCQIDIDDCSSTPCLNGAKCIDHPNG-YECQCATGFTGVLCEENIDNCDPDPCHHGQCQDG 587 HSP 9 Score: 132.494 bits (332), Expect = 2.046e-30 Identity = 124/371 (33.42%), Postives = 171/371 (46.09%), Query Frame = 3
Query: 1581 ETNPCENGGIFAPMPNEKHVCICSEKYMGKNCED-INYCYHRPCKHCGKCQVTRAWPHYKCECCKKYSGRHCEIR-NPCEPNPCLNMGECTHDGKTPSCICRPKFKGQFCG-DVNNCNPNPCLNGATCMEKEGQGNFACLCPPSWIGTICNTP-SQCASSPCLNGGTCREDGGSFQCICLEGFYGKTCSDRL--CYPNPCANGGTCVDDKGEFHCVCPLWARGRTC-LDVSPCLMNPCRNAAKCIDKYSGYRWVLGPTEYYCMCQPPYYGSHCQIN----RCQQCDEHAHCNVD----RCECDEGYRGDGKVCIRIPHPCHPNPCLNSGVCVDEGNGH-YHCLCKEHYKPPNCHV-VDICDPNPC-NGGKC 2639
+ PC NG PN + C C+ + G CE+ I+ C PC H G+CQ Y C C Y G C + + C +PCLN G C C C+P G C + ++C NPC++G CM+ G ++C+C P + G CN +CAS+PC G TC F+CIC EG + +C ++ C NPC + G C + C+C G C +D + CL NPC+N C + +GYR C C+ + G +CQ+N C C D C C Y GK C + PC PNPC N+ VC + N Y CLC ++ C + +D C PC N G C
Sbjct: 537 SSTPCLNGAKCIDHPN-GYECQCATGFTGVLCEENIDNCDPDPCHH-GQCQ--DGIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGVNCEINFDDCASNPCIHG-ICMD--GINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCICPEGPHHPSCYSQVNECLSNPCIH-GNCTGGLSGYKCLCDAGWVGINCEVDKNECLSNPCQNGGTCDNLVNGYR---------CTCKKGFKGYNCQVNIDECASNPCLNQGTCFDDISGYTCHCVLPYT--GKNCQTVLAPCSPNPCENAAVCKESPNFESYTCLCAPGWQGQRCTIDIDECISKPCMNHGLC 888 HSP 10 Score: 129.798 bits (325), Expect = 1.158e-29 Identity = 116/362 (32.04%), Postives = 158/362 (43.65%), Query Frame = 3
Query: 1641 CICSEKYMGKNCEDINYCYHRPCKHCGKCQVTRAWPHYKCECCKKYSGRHC-EIRNPCE---PNPCLNMGECTHDGKTPSCICRPKFKGQFC-GDVNNCNPNPCLNGATCMEKEGQGNFACLCPPSWIGTICNTP-SQCASSPCLNGGTCREDGGSFQCICLEGFYGKTCSDRL--CYPNPCANGGTCVDDKGEFHCVCPLWARGRTCLD-VSPCLMNPCRNAAKCIDKYSGYRWVLGPTEYYCMCQPPYYGSHC--QINRCQQ--CDEHAHC----NVDRCECDEGYRGDGKVCIRIPHPCHPNPCLNSGVCVDEGNGHYHCLCKEHYKPPNCHV-VDICDPNPCNGGKCVPGGSEGYRXI 2672
C+C E G C + C PC C Y C C + Y G C E + C NPC + G+C + C C + G C D+N C+ +PC N ATC++K G F CLC P + G C ++C S+PC+N G C + FQC+C GF G C + C PC NG C+D + C C G C + + C +PC + +C D G Y C+C P Y G+ C QI+ C C C N +C C G G C C NPC++ G+C+D G Y C+C + C++ +D C NPC G G G+R I
Sbjct: 362 CMCPEGKAGLLCHLDDACISNPCHKGALCDTNPLNGQYICTCPQGYKGADCTEDVDECAMANSNPCEHAGKCVNTDGAFHCECLKGYAGPRCEMDINECHSDPCQNDATCLDK--IGGFTCLCMPGFKGVHCELEINECQSNPCVNNGQCVDKVNRFQCLCPPGFTGPVCQIDIDDCSSTPCLNGAKCIDHPNGYECQCATGFTGVLCEENIDNCDPDPCHH-GQCQD---------GIDSYTCICNPGYMGAICSDQIDECYSSPCLNDGRCIDLVNGYQCNCQPGTSGVN--CEINFDDCASNPCIH-GICMD-GINRYSCVCSPGFTGQRCNIDIDECASNPCRKGATCINGVNGFRCI 707 HSP 11 Score: 119.398 bits (298), Expect = 1.775e-26 Identity = 112/387 (28.94%), Postives = 156/387 (40.31%), Query Frame = 3
Query: 1584 TNPCENGGIFAPMPNEKHVCICSEKYMGKNCED-INYCYHRPCKHCGKCQVTRAWPHYKCECCKKYSGRHC--EIRNPCEPNPCLNMGECTHDGKTPSCICRPKFKGQFCGD-VNNCNPNPCLNGATCMEKEGQGNFACLCPPSWIGTICNTPS-------------------------------------------------QCASSPCLNGGTCREDGGSFQCICLEGFYGKTCSDRL--CYPNPCANGGTCVDDKGEFHCVCPLWARGRTCLD-VSPCLMNP-CRNAAKCIDKYSGYRWVLGPTEYYCMCQPPYYGSHCQ--INRCQQCDEHAHCNVD--------RCECDEGYRGDGKVCIRIPHPCHPNPCLNSGVCVDEGN 2543
+ PC+NGG + N + C C + G +CE+ IN C C + G C + C C ++G C EI N C +PCLN G C T C C + G+ C VN C+ +PC N TC++K+ + CLCP W G C+ P+ +CAS+PC +G TC + G ++C C+ G+ G C + C PC NGGTC+D F C CP RG C + + C P C N +C+D+ GY C C P + G C+ IN C + ++D C C + G+ C C PCLN G C N
Sbjct: 955 SEPCKNGGTCSDYVN-SYTCKCQAGFDGVHCENNINECTESSCFNGGTC--VDGINSFSCLCPVGFTGSFCLHEI-NECSSHPCLNEGTCVDGLGTYRCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKAESQ--CLCPSGWAGAYCDVPNVSCDIAASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDECASNPCQHGATCSDFIGGYRCECVPGYQGVNCEYEVDECQNQPCQNGGTCIDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGYS---------CRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFT--GRHCETFVDVCPQMPCLNGGTCAVASN 1324 HSP 12 Score: 110.538 bits (275), Expect = 9.184e-24 Identity = 108/367 (29.43%), Postives = 150/367 (40.87%), Query Frame = 3
Query: 1698 HRPCKHCGKCQVTRAWPHYKCECCKKYSGRHCEIRNPCEPNPCLNMGECTHDGKT--PSCICRPKFKGQFCGDVNNCNP----NPCLNGATCMEKEGQGNFACLCPPSWIGTICNTPSQCASSPCLNGGTCREDGGSFQCICLEGFYGKTCSDRLC---YPNPCANGGTCVDDKGEFHCVCPLWARGRTCLDV-SPCLMNPCRNAAKCIDKYSGYRWVLGPTEYYCMCQPPYYGSHCQIN-------RCQQ---CDEHAHCNVDRCECDEGYRGDGKVCIRIPHPC--HPNPCLNSGVCVDEGNGHYHCLCKEHYKPPNCHVVDICDPNPCNGGKCVPGGSEGYRXIFVTQILAMVANVCPVAQKGI 2732
+ PC + G C Y C+C + + G +C+ R+PCE N C N G C +C C F G+ C + +P PCLNG TC + + C C + G C C S PC NG TC F C CL GF G+ C + P C +GGTC++ G + C CP G+ C + PC +PC N C G + C C P + GS C+ N RCQ C + N C C + G+ C C PN C N G C + NG Y C+C + +C + + C C PG + R +A + +CP + G+
Sbjct: 32 YEPCVNEGMCVTYHNGTGY-CKCPEGFLGEYCQHRDPCEKNRCQNGGTCVAQAMLGKATCRCASGFTGEDC-QYSTSHPCFVSRPCLNGGTC-HMLSRDTYECTCQVGFTGKECQWTDACLSHPCANGSTCTTVANQFSCKCLTGFTGQKCETDVNECDIPGHCQHGGTCLNLPGSYQCQCPQGFTGQYCDSLYVPCAPSPCVNGGTCRQT--------GDFTFECNCLPGFEGSTCERNIDDCPNHRCQNGGVCVDGV--NTYNCRCPPQWT--GQFCTEDVDECLLQPNACQNGGTCANR-NGGYGCVCVNGWSGDDCSE----NIDDCAFASCTPGSTCIDR-------VASFSCMCPEGKAGL 371 HSP 13 Score: 99.3673 bits (246), Expect = 2.384e-20 Identity = 99/324 (30.56%), Postives = 134/324 (41.36%), Query Frame = 3
Query: 1437 AKEAGLETVHTEDHIENGRKAYHIHHPPNHLGYRVDKVSHHFDHRVTAETNPCENGGIFAPMPNEKHVCICSEKYMGKNCE-DINYCYHRPCKHCGKCQVTRAWPHYKCECCKKYSGRHCEIR-NPCEPNP-CLNMGECTHDGKTPSCICRPKFKGQFC-GDVNNCNPNPCLNGATCMEKEGQGNFACLCPPSWIGTICNT-PSQCASSPCLNGGTCREDGG---SFQCICLEGFYGKTCSDRLCYPNPCANGGTCVDDKGEFHCVCPLWARGRTCLDVSPCLMNPCRNAAKCIDKYSGYRWVLGPTEYYCMCQPPYYGSHCQI 2384
A G+ H H A + H+ LGY D +NPC++G + + C C Y G NCE +++ C ++PC++ G C H+KC C G CE + C P CLN G+C SC C P F G+ C GD+N C NPC + + + ++ C+C ++ G C T C PCLNGGTC F C C GF G C C C G CV C CP R C S C +PC++ C + P Y C C PP+ GS C++
Sbjct: 1109 ASRRGVLVEHLCQHSGVCINAGNTHYCQCPLGYTGSYCEEQLDE---CASNPCQHGATCSDFIG-GYRCECVPGYQGVNCEYEVDECQNQPCQNGGTC--IDLVNHFKCSCPPGTRGLLCEENIDDCARGPHCLNGGQCMDRIGGYSCRCLPGFAGERCEGDINECLSNPCSSEGSLDCIQLTNDYLCVCRSAFTGRHCETFVDVCPQMPCLNGGTCAVASNMPDGFICRCPPGFSGARCQSS-CGQVKCRKGEQCVHTASGPRCFCP---SPRDC--ESGCASSPCQHGGSCHPQRQ-------PPYYSCQCAPPFSGSRCEL 1413 The following BLAST results are available for this feature:
BLAST of TCONS_00017148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.