TCONS_00012927-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012927-protein
Unique NameTCONS_00012927-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012927-protein ID=TCONS_00012927-protein|Name=TCONS_00012927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
YSTFRRLVLLKRCASVNVSRRQYNDNQHQQFQAIDNEILYEGHRPTNSFQ
KSLLAVGSALAGVTNPLRSDMVAALGESLFPEPALRNIQLQMLNDPTGQR
ILKEKPIIDGNILNLDKLLTLSKDTFGYTYASFMRKHEITSDTRDPVHYV
DNTELAYIIKRYRQIHDFAHVFLDLSISVPEEVIIKWFEWAHFGLPMNAV
SALFGPLATSAEEKATITKYIPWALYNGYNSKSFMNVYFEEELETNFMEL
KKRLNLIDKPNL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007257XLOC_007257Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012927TCONS_00012927Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007715Coq4
IPR027540Coq4_euk
Vocabulary: Biological Process
TermDefinition
GO:0006744ubiquinone biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006744 ubiquinone biosynthetic process
cellular_component GO:0005743 mitochondrial inner membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007715Ubiquinone biosynthesis protein Coq4PFAMPF05019Coq4coord: 40..258
e-value: 7.8E-79
score: 264.0
IPR027540Ubiquinone biosynthesis protein Coq4, eukaryotesHAMAPMF_03111Coq4coord: 32..259
score: 36.2

Blast
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BLAST of TCONS_00012927-protein vs. Swiss-Prot (Human)
Match: COQ4 (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Homo sapiens GN=COQ4 PE=1 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 4.394e-57
Identity = 87/223 (39.01%), Postives = 133/223 (59.64%), Query Frame = 0 
Query:   39 LYEGHRPTNSFQKSLLAVGSALAGVTNPLRSDMVAALGESLFPEPALRNIQLQMLNDPTGQRILKEKPIIDGNILNLDKLLTLSKDTFGYTYASFMRKHEITSDTRDPVHYVDNTELAYIIKRYRQIHDFAHVFLDLSISVPEEVIIKWFEWAHFGLPMNAVSALFGPLATSAEE-KATITKYIPWALYNGYNSKSFMNVYFEEELETNFMELKKRLNLIDKP 260
            LY  H PT+  QK LLA GSA   + NP R DMVA LGE+      L+ ++ QM  DP G +IL+E+P I  + L+L KL +L + + G  Y  F+  + ++ DTR P  +VD+ ELAY+I+RYR++HD  H  L +  ++  E+++KWFE    GLPM  + A FGP+   A+  +  +++ IPWA+ NG  +   +N+Y+E   E +   L++ L +   P
Sbjct:   37 LYSHHLPTSPLQKGLLAAGSAAMALYNPYRHDMVAVLGETTG-HRTLKVLRDQMRRDPEGAQILQERPRISTSTLDLGKLQSLPEGSLGREYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNILGEIVVKWFEAVQTGLPMCILGAFFGPIRLGAQSLQVLVSELIPWAVQNGRRAPCVLNLYYERRWEQSLRALREELGITAPP 258
The following BLAST results are available for this feature:
BLAST of TCONS_00012927-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COQ44.394e-5739.01Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
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