TCONS_00012927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012927
Unique NameTCONS_00012927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length824

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012927 ID=TCONS_00012927|Name=TCONS_00012927|organism=Clytia hemisphaerica|type=transcript|length=824bp
TATTCAACATTTAGAAGACTGGTATTACTAAAAAGATGTGCTTCTGTAAA
TGTAAGTAGGCGGCAGTACAATGACAACCAACACCAGCAATTTCAGGCTA
TTGACAATGAAATTTTATATGAAGGTCACAGACCCacaaattcatttcaa
aagAGCTTGTTAGCTGTTGGTTCAGCATTAGCAGGAGTAACTAACCCCTT
GAGATCTGACATGGTAGCTGCCCTAGGGGAATCCTTGTTTCCTGAACCAG
CTCTCCGTAATATTCAGTTACAAATGCTTAATGACCCAACCGGACAAAGG
ATTCTAAAGGAGAAACCTATCATCGATGGCAACATACTAAATCTAGATAA
ATTGCTTACTCTGTCCAAGGACACTTTTGGGTATACATATGCCTCCTTTA
TGAGAAAACATGAAATTACTTCGGATACTAGAGATCCTGTTCATTATGTT
GACAACACTGAGTTAGCATATATCATAAAGCGTTATCGTCAGATCCACGA
TTTTGCAcatgtttttcttgatttgtctATCAGTGTACCAGAAGAAGTAA
TTATTAAATGGTTTGAGTGGGCTCATTTTGGCCTTCCAATGAATGCTGTG
TCAGCTCTTTTTGGACCCCTAGCTACGTCAGCAGAGGAAAAagcaacaat
aacaaaatacaTTCCTTGGGCGTTATATAATGGATATAATTCTAAATCAT
TCATGAATGTTTACTTTGAAGAAGAACTTGAAACAAATTTCatggaattg
aaaaaaagattgaatttgataGACAAGCCTAATTTATGAATGCCTTGAAT
TTGATTGTTATTCATTATTATGTG
Run BLAST on NCBI

protein sequence of TCONS_00012927-protein

>TCONS_00012927-protein ID=TCONS_00012927-protein|Name=TCONS_00012927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
YSTFRRLVLLKRCASVNVSRRQYNDNQHQQFQAIDNEILYEGHRPTNSFQ
KSLLAVGSALAGVTNPLRSDMVAALGESLFPEPALRNIQLQMLNDPTGQR
ILKEKPIIDGNILNLDKLLTLSKDTFGYTYASFMRKHEITSDTRDPVHYV
DNTELAYIIKRYRQIHDFAHVFLDLSISVPEEVIIKWFEWAHFGLPMNAV
SALFGPLATSAEEKATITKYIPWALYNGYNSKSFMNVYFEEELETNFMEL
KKRLNLIDKPNL
Run BLAST on NCBI

transcript from alignment at sc0000157:254737..255560

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012927 ID=TCONS_00012927|Name=TCONS_00012927|organism=Clytia hemisphaerica|type=transcript|length=824bp|location=Sequence derived from alignment at sc0000157:254737..255560 (Clytia hemisphaerica)
CACATAATAATGAATAACAATCAAATTCAAGGCATTCATAAATTAGGCTT
GTCtatcaaattcaatctttttttcaattccatGAAATTTGTTTCAAGTT
CTTCTTCAAAGTAAACATTCATGAATGATTTAGAATTATATCCATTATAT
AACGCCCAAGGAAtgtattttgttattgttgctTTTTCCTCTGCTGACGT
AGCTAGGGGTCCAAAAAGAGCTGACACAGCATTCATTGGAAGGCCAAAAT
GAGCCCACTCAAACCATTTAATAATTACTTCTTCTGGTACACTGATagac
aaatcaagaaaaacatgTGCAAAATCGTGGATCTGACGATAACGCTTTAT
GATATATGCTAACTCAGTGTTGTCAACATAATGAACAGGATCTCTAGTAT
CCGAAGTAATTTCATGTTTTCTCATAAAGGAGGCATATGTATACCCAAAA
GTGTCCTTGGACAGAGTAAGCAATTTATCTAGATTTAGTATGTTGCCATC
GATGATAGGTTTCTCCTTTAGAATCCTTTGTCCGGTTGGGTCATTAAGCA
TTTGTAACTGAATATTACGGAGAGCTGGTTCAGGAAACAAGGATTCCCCT
AGGGCAGCTACCATGTCAGATCTCAAGGGGTTAGTTACTCCTGCTAATGC
TGAACCAACAGCTAACAAGCTcttttgaaatgaatttgtGGGTCTGTGAC
CTTCATATAAAATTTCATTGTCAATAGCCTGAAATTGCTGGTGTTGGTTG
TCATTGTACTGCCGCCTACTTACATTTACAGAAGCACATCTTTTTAGTAA
TACCAGTCTTCTAAATGTTGAATA

Coding sequence (CDS) from alignment at sc0000157:254737..255560

>TCONS_00012927 ID=TCONS_00012927|Name=TCONS_00012927|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at sc0000157:254737..255560 (Clytia hemisphaerica)
TCATAAATTAGGCTTGTCtatcaaattcaatctttttttcaattccatGA
AATTTGTTTCAAGTTCTTCTTCAAAGTAAACATTCATGAATGATTTAGAA
TTATATCCATTATATAACGCCCAAGGAAtgtattttgttattgttgctTT
TTCCTCTGCTGACGTAGCTAGGGGTCCAAAAAGAGCTGACACAGCATTCA
TTGGAAGGCCAAAATGAGCCCACTCAAACCATTTAATAATTACTTCTTCT
GGTACACTGATagacaaatcaagaaaaacatgTGCAAAATCGTGGATCTG
ACGATAACGCTTTATGATATATGCTAACTCAGTGTTGTCAACATAATGAA
CAGGATCTCTAGTATCCGAAGTAATTTCATGTTTTCTCATAAAGGAGGCA
TATGTATACCCAAAAGTGTCCTTGGACAGAGTAAGCAATTTATCTAGATT
TAGTATGTTGCCATCGATGATAGGTTTCTCCTTTAGAATCCTTTGTCCGG
TTGGGTCATTAAGCATTTGTAACTGAATATTACGGAGAGCTGGTTCAGGA
AACAAGGATTCCCCTAGGGCAGCTACCATGTCAGATCTCAAGGGGTTAGT
TACTCCTGCTAATGCTGAACCAACAGCTAACAAGCTcttttgaaatgaat
ttgtGGGTCTGTGACCTTCATATAAAATTTCATTGTCAATAGCCTGAAAT
TGCTGGTGTTGGTTGTCATTGTACTGCCGCCTACTTACATTTACAGAAGC
ACATCTTTTTAGTAATACCAGTCTTCTAAATGTTGAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007257XLOC_007257Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012927-exon-sc0000157-1491911889:254737..255560TCONS_00012927-exon-sc0000157-1491911889:254737..255560Clytia hemisphaericaexon
TCONS_00012927-exon-sc0000157-1510915933:254737..255560TCONS_00012927-exon-sc0000157-1510915933:254737..255560Clytia hemisphaericaexon
TCONS_00012927-exon-sc0000157-1575043694:254737..255560TCONS_00012927-exon-sc0000157-1575043694:254737..255560Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012927-proteinTCONS_00012927-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:254737..255560 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
48.1113	46.3535	72.5014	76.8103	17.2704	16.4751	13.3499	15.692	14.2433	10.4772	14.9035	15.022	18.4924	19.8022	25.6158	28.3334	24.078	31.2484	6.00965	5.45446	21.5851	19.8327	46.3003	45.2807	20.0674	23.4373	10.5204	7.93535	18.8244	22.1146
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007715Coq4
IPR027540Coq4_euk
Vocabulary: Biological Process
TermDefinition
GO:0006744ubiquinone biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006744 ubiquinone biosynthetic process
cellular_component GO:0005743 mitochondrial inner membrane
Blast
[Close]
BLAST of TCONS_00012927 vs. Swiss-Prot (Human)
Match: COQ4 (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Homo sapiens GN=COQ4 PE=1 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.823e-55
Identity = 87/223 (39.01%), Postives = 133/223 (59.64%), Query Frame = 1 
Query:  115 LYEGHRPTNSFQKSLLAVGSALAGVTNPLRSDMVAALGESLFPEPALRNIQLQMLNDPTGQRILKEKPIIDGNILNLDKLLTLSKDTFGYTYASFMRKHEITSDTRDPVHYVDNTELAYIIKRYRQIHDFAHVFLDLSISVPEEVIIKWFEWAHFGLPMNAVSALFGPLATSAEE-KATITKYIPWALYNGYNSKSFMNVYFEEELETNFMELKKRLNLIDKP 780
            LY  H PT+  QK LLA GSA   + NP R DMVA LGE+      L+ ++ QM  DP G +IL+E+P I  + L+L KL +L + + G  Y  F+  + ++ DTR P  +VD+ ELAY+I+RYR++HD  H  L +  ++  E+++KWFE    GLPM  + A FGP+   A+  +  +++ IPWA+ NG  +   +N+Y+E   E +   L++ L +   P
Sbjct:   37 LYSHHLPTSPLQKGLLAAGSAAMALYNPYRHDMVAVLGETTG-HRTLKVLRDQMRRDPEGAQILQERPRISTSTLDLGKLQSLPEGSLGREYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNILGEIVVKWFEAVQTGLPMCILGAFFGPIRLGAQSLQVLVSELIPWAVQNGRRAPCVLNLYYERRWEQSLRALREELGITAPP 258
The following BLAST results are available for this feature:
BLAST of TCONS_00012927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COQ41.823e-5539.01Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
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