TCONS_00012271-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012271-protein
Unique NameTCONS_00012271-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012271-protein ID=TCONS_00012271-protein|Name=TCONS_00012271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MKLNIAYPANGSQKLVEIDDEIKLRPFFEKRMAQEVSLDCLGDEFKGYIA
RISGGNDKQGFPMKQGVMTNGRVKLLLKKGHSCYRTRRAGERKRKSVRGC
IVDSNLAVLNFVLIKKGEQEIPGLTDRVVPRRLGPKRVGKIRKLFNLSKE
DDVTQYIIRKPIPTPEGKPEPKKPKTKAPKIQRLVTPQRLQRKRKVLALK
RDRCNKAKQEAAAYAKMLAKKHKEAKEKRHKEHMKRRLSSLRESKSN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006910XLOC_006910Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012271TCONS_00012271Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001377Ribosomal_S6e
IPR014401Ribosomal_S6_euk
IPR018282Ribosomal_S6e_CS
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 190..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..247
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..180
IPR001377Ribosomal protein S6eSMARTSM01405Ribosomal_S6e_2coord: 1..126
e-value: 4.0E-81
score: 285.5
IPR001377Ribosomal protein S6ePFAMPF01092Ribosomal_S6ecoord: 1..126
e-value: 5.9E-59
score: 197.4
IPR014401Ribosomal protein S6, eukaryoticPIRSFPIRSF002129RPS6ecoord: 1..247
e-value: 8.4E-120
score: 396.5
IPR018282Ribosomal protein S6e, conserved sitePROSITEPS00578RIBOSOMAL_S6Ecoord: 52..63

Blast
[Close]
BLAST of TCONS_00012271-protein vs. Swiss-Prot (Human)
Match: RS6 (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 3.450e-124
Identity = 175/247 (70.85%), Postives = 207/247 (83.81%), Query Frame = 0 
Query:    1 MKLNIAYPANGSQKLVEIDDEIKLRPFFEKRMAQEVSLDCLGDEFKGYIARISGGNDKQGFPMKQGVMTNGRVKLLLKKGHSCYRTRRAGERKRKSVRGCIVDSNLAVLNFVLIKKGEQEIPGLTDRVVPRRLGPKRVGKIRKLFNLSKEDDVTQYIIRKPIPTPEGKPEPKKPKTKAPKIQRLVTPQRLQRKRKVLALKRDRCNKAKQEAAAYAKMLAKKHKEAKEKRHKEHMK-RRLSSLRESKS 246
            MKLNI++PA G QKL+E+DDE KLR F+EKRMA EV+ D LG+E+KGY+ RISGGNDKQGFPMKQGV+T+GRV+LLL KGHSCYR RR GERKRKSVRGCIVD+NL+VLN V++KKGE++IPGLTD  VPRRLGPKR  +IRKLFNLSKEDDV QY++RKP+       E KKP+TKAPKIQRLVTP+ LQ KR+ +ALK+ R  K K+EAA YAK+LAK+ KEAKEKR ++  K RRLSSLR S S
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL-----NKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTS 242
The following BLAST results are available for this feature:
BLAST of TCONS_00012271-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS63.450e-12470.8540S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
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