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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012271 ID=TCONS_00012271|Name=TCONS_00012271|organism=Clytia hemisphaerica|type=transcript|length=1130bp
AATTTTTGTTCATTTGTGGCAGAATATATCggaatagatattatattttt
ctatttgttCAATcgtttgaaatcgaaagtagaATAATATCTACTTTGCA
TTTTGAATCCCCGATAAACATTCCGAGAATTACGTCAAAAGTCTTTTTAA
CACCGTGAAGGTTCAATATGGCTCTCTAAATTTGCCAGGGCATCAGATAG
AATTAAATAGGCCTACAAAATGAAGTTGAACATTGCTTACCCAGCCAATG
GCAGTCAAAAACTTGTTGAGATTGACGATGAAATCAAGCTTCGTCCATTC
TTCGAGAAGCGTATGGCTCAAGAAGTCAGCTTAGACTGTCTTGGTGATGA
ATTTAAGggtTACATCGCCAGAATCTCTGGAGGAAACGACAAGCAAGGTT
TTCCAATGAAACAAGGTGTAATGACTAACGGACGTGTCAAATTATTGTTA
AAGAAAGGACACAGCTGTTACCGAACTCGACGAGCAGGTGAACGTAAACG
AAAGTCTGTCCGTGGATGTATCGTTGATAGCAACTTGGCTGTCTTGAACT
TCGTTCTCATCAAGAAGGGAGAACAAGAAATCCCAGGATTGACAGACCGA
GTTGTTCCACGCAGATTAGGACCAAAGCGTGTTGGTAAAATCCGAAAGTT
GTTCAACTTGAGCAAAGAAGATGACGTCACACAATACATCATCCGTAAGC
CAATCCCAACTCCCGAGGGTAAACCAGAGCCAAAGAAACCCAAGACCAAA
GCTCCAAAAATCCAACGATTAGTCACTCCACAACGTCTTCAAAGAAAACG
CAAAGTCTTAGCTTTGAAACGCGACCGATGCAACAAGGCTAAACAAGAAG
CTGCCGCTTACGCTAAAATGCTGGCTAAAAAGCACAAGGAAGCCAAAGAG
AAACGGCACAAAGAACACATGAAGAGAAGACTTAGTAGTCTTCGGGAATC
CAAGAGCAATTAATTTAGAATGTGAAAATATACaccttcaaaataaaatc
atcaCTTTGTTTCTTCTTAAACCCAGAGTAATTGCGTTGTCCTCTTTGAC
CAACCgattatacatttttttataaccTCCAATTTTCGTGCCAGGGTTTA
AGTTTCTTTgtagcttttttcacatgtacg Run BLAST on NCBI protein sequence of TCONS_00012271-protein >TCONS_00012271-protein ID=TCONS_00012271-protein|Name=TCONS_00012271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MKLNIAYPANGSQKLVEIDDEIKLRPFFEKRMAQEVSLDCLGDEFKGYIA
RISGGNDKQGFPMKQGVMTNGRVKLLLKKGHSCYRTRRAGERKRKSVRGC
IVDSNLAVLNFVLIKKGEQEIPGLTDRVVPRRLGPKRVGKIRKLFNLSKE
DDVTQYIIRKPIPTPEGKPEPKKPKTKAPKIQRLVTPQRLQRKRKVLALK
RDRCNKAKQEAAAYAKMLAKKHKEAKEKRHKEHMKRRLSSLRESKSN Run BLAST on NCBI transcript from alignment at sc0000143:378729..389968+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012271 ID=TCONS_00012271|Name=TCONS_00012271|organism=Clytia hemisphaerica|type=transcript|length=11240bp|location=Sequence derived from alignment at sc0000143:378729..389968+ (Clytia hemisphaerica)
AATTTTTGTTCATTTGTGGCAGAATATATCggaatagatattatattttt
ctatttgttCAATcgtttgaaatcgaaagtagaATAATATCTACTTTGCA
TTTTGAATCCCCGATAAACATTCCGAGAATTACGTCAAAAGTCTTTTTAA
CACCGTGAAGGTTCAATATGGCTCTCTAAATTTGCCAGGGCATCAGATAG
AATTAAATAGGCCTACAAAATGAAGGTACTGTTTCCAACATCTTACgctt
ttcaatcaaatttcatgattttcaaCATCTTGGAACCTTTTCCTTCTCAG
ATACGGCTTTTGGTATTGAAAAGATGACTGATTATTTGGATATGAATGGC
TTTGTGATCGTGTGTCATTTGCCTGATTGGTATACTGGATTTGATAGATT
TTGGTTAACTTGTTGTGTATTGTATTAAATATTGAGAAGTTTGCTTTCTC
TCAAGCAAAGCATTTTTGAGGATTGTTGTACCTCTGAAGAGTGGTTTTAG
AAAATTACACTGGATTTGTCACACAATTAAAGTTATCGACTCATTTTCAA
AGGGGGTAAAATTGGAAAGTTTCAGGTTGTACATCGACTTTCATTGCTCC
AAATTTGATCAATTGAACTTATCGAAACGATCGAACTAATCTAACCTACT
TaatttttacaagaaaaactaaggggtcactcacatatcgattcttcacA
CAACTAACATCAAATTGACGCTAACTTGAAAACCCTCCCACCCCCACCTC
TTGAcgtgaaagtttaaaaattatcaaaaatcaatgaaactctaaatttt
ctatttcactttcattgttgtttcgtcagccatctttaattgttctaggg
cttgctcagtttacattttaaataaatgaggtaatttttaaacttttttc
ggaAAGTTGCCAGAATTAATTATCTCTGTAATCATAACCAGGCATAGTTA
attgatataatcgataatcttgagtaatcgataagtaatcgatggattag
atatcgattaactgatagaatcgatagggaatcaatactcaagatttttt
caaagctcgattatttatcgatcaattttgcCATCGATTGTTTACAGATT
ATAAATCAATTATACTTCAATCAAATTAGGATTCCATTAAAAATCGATCg
gctatcgatcacagcttttgatagggtggtcaggccaaaattttcccctc
aaattttgaaaaccaaaccaattttatttgaaagtccttacctttgtgag
aaaaatgaggggtcatttgttaaaattggtcaAGTAGTTCCAAGCAACCA
TGAAATGACCTTTAAAGATGGCGGGTGAATTCTAGTCTTCCGCGTGGCGg
gcgtgaggagttttgctggcgcggtctgaaaatcagCCCGATGATTGTTA
AACTTTTAGCCTATcagctaatgagctggaaatgatagctaaaaacacat
tttaccaatgaaaagctgaaacccttagctttccaacgatatatggtagt
cctgataaaaatttcagaaaagtgctgaaaaatctaaatttcttgtattt
tttggATTTAAAGACAGCCTGTAGATTATCGAAAAGGCTACCAcgtgaca
aactaaagtactatctttcccgcgttttataatTAAAACCGCGAGTATAG
ACtaaaccagctcaatagcgatagCCACttgaaaaatggtggtcaaggtC
GACGGTGGTGCCACAAATTCtgagtcgccattttttcaccttgatgtcta
ataaatggtatatctttttattgaatgTAGGTAATTAgatggggtttttt
tctttgttttctctgataagttctgagtatttaaaaaaaaagaatgaaca
agtttggagttgttaaggataagttatgatggatggaatgttctaatttt
gattttccacTTGTTCCACGctaaaaatcccgacgagtgcgcaccctact
tttgatcgattacatatcgatcaaaaattgattaatcatcgatcaactat
cgattcgcgatacttcattaaataccttatcttggccctttttacgcccg
ACCTTATTAgtgttatttttgggctcgttggtggaataaggccctgcgta
aaaagggccggtaaTGTAGTGAATAGTCGGTTGCGATCGATATATAATCA
ATAACGATACGTGatcgaagataagtaaataattgataagtaatcaatgc
ataaatgataagtaatcaatgcataaatgataagtaatcaatgattgtta
acaatcgatacatgattgataagtaatcaataGGTTGTAatgtagtcgat
atgtgatcgataagtaattgATAGCTTGGTAATAATCGATCGCTGATCGa
tagattttttgaaggtctgattacctatcgattctattggttaatcgata
tctaatccatcgattactctGGATTACTCAAAATTATCAAtcatatcgat
taactacgtcTGGTCATAATCAACAGATAGCGGTAGTTAAAAAACAGACC
CCCTTCGCGTCAATTTGaagttagtcgtgggaagaattgatatgtgagtg
acccgtAATGCAGCCATAGTGTACACGCCCCTAAATTAAGGGGGTTTTGT
TGATTTGGGTTCAAaatctttaggtgggactttcgattttttggatttca
gggGGGGCACAGGATTAGGTGGGACCTGATTTTTTAAGGTGGGACTAAGG
TGGTTTGGTTGTAAAATTGAAACATCTCGTCAACATCAATCAATGATATA
TAACTTTAGTAGTTACCTTTTACTATTGAAACCTAGTGGATAATCTTGTA
CATATGACCTGTATTATACTTGAAAGAAGACTTANNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTAA
ACTCTTGTAATTTCATGGAAGGCAAAAAAGACAGGCAACTTGATTATTGA
CTATTGtttaaattacataaattaagCATTTTAAGGCCATTACTTTGAGC
CCTACAAGAGATGAAACTGAGCTGAGTTTTGCAGCCCCATATTGCTCTTT
TCAATTAGCCAATCAGAAAAGACATTACTTTTCTTGTACCATGTGCAAAA
GatatcaacaaaagaaaccaattTTTCGGGTCAGTGGAATGAGAAGAATG
TTCTGCAACAAAAGTGCTCTAGCGGTGAACCTTAAACGCCAACCATAAAA
TGCTGTGTGGGTTACAgcctaaaattttattttggaaagGTCATGTATGt
tgaaagaaaatgactgattttgcttgaaacacaacatATTGGGTGTAAAC
ATAGCAAAACTAGTGACCCCCTCTTCTACGCATCTGTATGCTTTATGTGT
ACCGGGGGGTACACAGCCAAATATANTGTACGCATCCGTATGCTTTATGT
GTACCCCCCTTTCAGccaaatataataccaataaggtagtgttaatcttt
tttatgaagttaaaaaaatttcttaagtTGCACCTTTTTAGCCGTAGTCA
TAACTATAAAACCTCTTAAAAATAGGTTTGAACGCTAAAAGAACAAAATT
ATTATCACAAATCTAAGTTTACTTATATACTTAAAGccacttgtttcaaa
taaacaccCCGCCTAGAGCATTTTCAGTTGTTGTTTCAATGTTGTTGTTA
TGATTAAAGGACATTTGTTGGGGTTCTGATTACTCTCAGGTGCTTATTCA
AATTCAGAGATTTGTTATCAAGTATTTTTCATTGGACACCTAATTTCAAA
GTCGCGTCTTTACACTCAGCCCtcccttaaaataaggggggaCTTGAATT
TTGGGTTAaggggaaatttttgaaattttcagaaatgaaGGGGGTTAATG
TTTAAGGGGACAAAAGCCaaagtaattttgaatttaagggTAGAGTACTT
CATGTGAATCCAAATCTTTTTTCATACTcttgcaaagttttttttttctt
aaaaatatactTAATATACTGTTTAAGGTGGTAAAATGAGGgtgaaaatc
tgaaaactttCTCTCTCACTCAACCATGGTGGGTGACAAGATTTTGTTGG
CGTCTGTACtaacacactttgtaatacgaAAAGCTCACACACTTAGTAAT
GAAATATAAATTTAaatcatagtgtgcaagggggttccaggtcccacctg
aaaattcaggtcccaccttatcctaaaattcccaccttcagcccagactc
ccagatcccagctaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ATGCCATAAAAATGATTTCGTAAAAAGCCCTGTAAATTGCTTCACTATAC
ACTTAAAGCAGACAATTGAAGATTTAGATGCAAagtttcaaactttaaaa
tgaagACTGATACGTAAAGAAAATAAACTGGGTTCAGtcctaaaaaatta
aaagtgcaAAATAATGAATATCTTACTGTAATCATGGGTCGATTATATTA
ACATTTATAACAGAGAAGTCGTAACCCTGCTTTTTGTAAATTCCCTGATA
CGAACAGATAAGAAGCTTTATGTGGCTGAAAGAATTATCAATTGACTATG
TTAACCaattctaacttttttttaatattgtaGTGATCAAATGTTTTGAT
CAGCTATGAAAATAAAACCAGACGTCGAGTGTTTTAACTTTCATAATAaa
ctggaaaatgaaaaacccattgccccccccctaaaaaaagTCTTCACATT
TATTGTCTAAACGGttttgaaatcttaaaaaaatctttttgttttggatG
GAAATTTCCCTTTATTATTAAGTGTGTCAGGTGTTATTACAGAGCATGTT
GATTTTTATCACAAAGCATGCCAAGTtctattacaaagtgcgttagtACA
GCCCCCTCTAGATCTGATACTCTTGCCAGGGGCCATGTTTGTAAGAATCA
CATGTTCTAATGATCTAATATTGAAGAAAAATCACATTCTCGAAAGCATA
AAATTAAAGGGGtactttagaaaagaaaaataagatttAAAGGGGGATTA
GGAAATAGGGCACAGTACTAGTTGAATTCCAAATTGAGGGGGGAAATGGA
TAAAGGCTAATTTGCtgtttaagggggggggggctgaaaaaCATGGATTT
AAAAAGTAGTAGCTTAGTTTGATTAGAGAATCTGATTTACAGATATGACA
ATGTTCCAAGATGTTGAATATTAAATTGATTATTTCCTATTTAATTTTTC
TGTCTTTATTAAATTCAACCCTACCTTAATTTTTCACCAAAGTTGCCGTC
CTAGATGCTAAAGGGTCCCTATTCTTGCAAAAAGGCTTTCACATATCAGG
GTTAAAGTAAGATTTTTCATATAATGTATTTTCTCTTTTAGTTGAACATT
GCTTACCCAGCCAATGGCAGTCAAAAACTTGTTGAGATTGACGATGAAAT
CAAGCTTCGTCCATTCTTCGAGAAGCGTATGGCTCAAGAAGTCAGCTTAG
ACTGTCTTGGTGATGAATTTAAGGTAGCTATATTTTTGTTGTGGGAAAAT
GGTTCCAAAAACGTCTTTGTTTGATGAGTCTTGtcaaatttgttcaattt
aaTCTGGAaataaaatgagaaattttgcagatgagttgggagtttttata
agatactttaataattggtaaTTTGGACtaataaagcttttttcacatgt
acgtaaaattttacttaagaccttgaagggtgggaatttccctaagctta
cgtagtgttttaaggccttatgtagagtttgcttacgttcaaaaaatttt
gaacggaaggaaaagtcacgtaagaccctcttaatcaacaaaaactctac
ataatgtcgGAAActcccaaaagacagccttacgaacgattttccgtaaa
gtctaaagtaaaattttacgtgcatgtgaaaaaagcttaaaagcgacgcg
ttctttagaaaaagtaacaattgttttattactggttaagcttttttcac
atgcacgtaaaattttacttcagATAttcatagtttgcagaggggtatga
acccccctaggtttatttcatccccccctatatacccatccccccctttt
gtaatgaaatcttatccccccttTTTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAAGGA
AACTTgctttcccacctaccagcaaaattatcaacaagaaagagtatgaa
gtattatagtcacgagccaacaatgacagaatataactagcaatttgtat
ttgattagaaaattgaccaaaatttcctaacccccccttttttatttgat
ccccccctacattcccatcccccctagttttttcggcagatctcggtacc
ccccccctacaaaggccctccagaaagttggcatcccccctattaaaaag
ggggggtgcaaactatgataTTACGGAAAATCGATCGTAAGGCTGTCTGT
Tcggaatttccccgacattatgtagagtttttgttgattaaaaaggtctt
acgtgacttttccttcttttgaacgtaagcaaactctactTAAGGGTTTA
AATAttacgtaagcttagggaactttcaaggtcttaagtaaattttacgt
acatgtgaaaaaagctttaagggCCAACCAAAGCAAATGTATGAGCTTGA
AAAAACTCCAATTCGTCCCAAATTTTGTCCGGTTCTAAAAACTCtttagc
tcttcgggctttataaaggcttggggacacgagacgtttttttcgcgttg
gtgcaatgcaacatgctcgcATCCCCAAGCCTTAAATCTATGAcaataac
atttttttcattttcagggtTACATCGCCAGAATCTCTGGAGGAAACGAC
AAGCAAGGTTTTCCAATGAAACAAGGTGTAATGACTAACGGACGTGTCAA
ATTATTGTTAAAGAAAGGACACAGCTGTTACCGAACTCGACGAGCAGGTG
AACGTAAACGAAAGTCTGTCCGTGGATGTATCGTTGATAGCAACTTGGCT
GTCTTGAACTTCGTTCTCATCAAGAAGGGAGAACAAGAAATCCCAGGATT
GACAGACCGAGTTGTTCCACGCAGATTAGGACCAAAGCGTGTTGGTAAAA
TCCGAAAGTTGTTCAACTTGAGCAAAGAAGATGACGTCACACAATACATC
ATCCGTAAGCCAATCCCAACTCCCGAGGGTAAACCAGAGCCAAAGAAACC
CAAGACCAAAGCTCCAAAAATCCAACGATTAGTCACTCCACAACGTCTTC
AAAGAAAACGCAAAGTCTTAGCTTTGAAACGCGACCGATGCAACAAGGCT
AAACAAGAAGCTGCCGCTTACGCTAAAATGCTGGCTAAAAAGCACAAGGA
AGCCAAAGAGAAACGGCACAAAGAACACATGAAGAGAAGACTTAGTAGTC
TTCGGGAATCCAAGAGCAATTAATTTAGAATGTGAAAATATACaccttca
aaataaaatcatcaCTTTGTTTCTTCTTAAACCCAGAGTAATTGCGTTGT
CCTCTTTGACCAACCgattatacatttttttataaccTCCAATTTTCGTG
CCAGGGTTTAAGTTTCTTTgtagcttttttcacatgtacg Coding sequence (CDS) from alignment at sc0000143:378729..389968+ >TCONS_00012271 ID=TCONS_00012271|Name=TCONS_00012271|organism=Clytia hemisphaerica|type=CDS|length=2232bp|location=Sequence derived from alignment at sc0000143:378729..389968+ (Clytia hemisphaerica)
ATGAAGTTGAACATTGCTTACCCAGCCAATGGCAGTCAAAAACTTGTTGA
GATTGACGATGAAATCAAGCTTCGTCCATTCTTCGAGAAGCGTATGGCTC
AAGAAGTCAGCTTAGACTGTCTTGGTGATGAATTTAAGggtTACATCGCC
AGAATCTCTGGAGGAAACGACAAGCAAGGTTTTCCAATGAAACAAGGTGT
AATGACTAACGGACGTGTCAAATTATTGTTAAAGAAAGGACACAGCTGTT
ACCGAACTCGACGAGCAGGTGAACGTAAACGAAAGTCTGTCCGTGGATGT
ATCGTTGATAGCAACTTGGCTGTCTTGAACTTCGTTCTCATCAAGAAGGG
AGAACAAGAAATCCCAGGATTGACAGACCGAGTTGTTCCACGCAGATTAG
GACCAAAGCGTGTTGGTAAAATCCGAAAGTTGTTCAACTTGAGCAAAGAA
GATGACGTCACACAATACATCATCCGTAAGCCAATCCCAACTCCCGAGGG
TAAACCAGAGCCAAAGAAACCCAAGACCAAAGCTCCAAAAATCCAACGAT
TAGTCACTCCACAACGTCTTCAAAGAAAACGCAAAGTCTTAGCTTTGAAA
CGCGACCGATGCAACAAGGCTAAACAAGAAGCTGCCGCTTACGCTAAAAT
GCTGGCTAAAAAGCACAAGGAAGCCAAAGAGAAACGGCACAAAGAACACA
TGAAGAGAAGACTTAGTAGTCTTCGGGAATCCAAGAGCAATTAAATGAAG
TTGAACATTGCTTACCCAGCCAATGGCAGTCAAAAACTTGTTGAGATTGA
CGATGAAATCAAGCTTCGTCCATTCTTCGAGAAGCGTATGGCTCAAGAAG
TCAGCTTAGACTGTCTTGGTGATGAATTTAAGggtTACATCGCCAGAATC
TCTGGAGGAAACGACAAGCAAGGTTTTCCAATGAAACAAGGTGTAATGAC
TAACGGACGTGTCAAATTATTGTTAAAGAAAGGACACAGCTGTTACCGAA
CTCGACGAGCAGGTGAACGTAAACGAAAGTCTGTCCGTGGATGTATCGTT
GATAGCAACTTGGCTGTCTTGAACTTCGTTCTCATCAAGAAGGGAGAACA
AGAAATCCCAGGATTGACAGACCGAGTTGTTCCACGCAGATTAGGACCAA
AGCGTGTTGGTAAAATCCGAAAGTTGTTCAACTTGAGCAAAGAAGATGAC
GTCACACAATACATCATCCGTAAGCCAATCCCAACTCCCGAGGGTAAACC
AGAGCCAAAGAAACCCAAGACCAAAGCTCCAAAAATCCAACGATTAGTCA
CTCCACAACGTCTTCAAAGAAAACGCAAAGTCTTAGCTTTGAAACGCGAC
CGATGCAACAAGGCTAAACAAGAAGCTGCCGCTTACGCTAAAATGCTGGC
TAAAAAGCACAAGGAAGCCAAAGAGAAACGGCACAAAGAACACATGAAGA
GAAGACTTAGTAGTCTTCGGGAATCCAAGAGCAATTAAATGAAGTTGAAC
ATTGCTTACCCAGCCAATGGCAGTCAAAAACTTGTTGAGATTGACGATGA
AATCAAGCTTCGTCCATTCTTCGAGAAGCGTATGGCTCAAGAAGTCAGCT
TAGACTGTCTTGGTGATGAATTTAAGggtTACATCGCCAGAATCTCTGGA
GGAAACGACAAGCAAGGTTTTCCAATGAAACAAGGTGTAATGACTAACGG
ACGTGTCAAATTATTGTTAAAGAAAGGACACAGCTGTTACCGAACTCGAC
GAGCAGGTGAACGTAAACGAAAGTCTGTCCGTGGATGTATCGTTGATAGC
AACTTGGCTGTCTTGAACTTCGTTCTCATCAAGAAGGGAGAACAAGAAAT
CCCAGGATTGACAGACCGAGTTGTTCCACGCAGATTAGGACCAAAGCGTG
TTGGTAAAATCCGAAAGTTGTTCAACTTGAGCAAAGAAGATGACGTCACA
CAATACATCATCCGTAAGCCAATCCCAACTCCCGAGGGTAAACCAGAGCC
AAAGAAACCCAAGACCAAAGCTCCAAAAATCCAACGATTAGTCACTCCAC
AACGTCTTCAAAGAAAACGCAAAGTCTTAGCTTTGAAACGCGACCGATGC
AACAAGGCTAAACAAGAAGCTGCCGCTTACGCTAAAATGCTGGCTAAAAA
GCACAAGGAAGCCAAAGAGAAACGGCACAAAGAACACATGAAGAGAAGAC
TTAGTAGTCTTCGGGAATCCAAGAGCAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012271-exon-sc0000143-1491911889:378729..378953 | TCONS_00012271-exon-sc0000143-1491911889:378729..378953 | Clytia hemisphaerica | exon |
| TCONS_00012271-exon-sc0000143-1510915933:378729..378953 | TCONS_00012271-exon-sc0000143-1510915933:378729..378953 | Clytia hemisphaerica | exon |
| TCONS_00012271-exon-sc0000143-1575043694:378729..378953 | TCONS_00012271-exon-sc0000143-1575043694:378729..378953 | Clytia hemisphaerica | exon |
| TCONS_00012271-exon-sc0000143-1491911889:387670..387801 | TCONS_00012271-exon-sc0000143-1491911889:387670..387801 | Clytia hemisphaerica | exon |
| TCONS_00012271-exon-sc0000143-1510915933:387670..387801 | TCONS_00012271-exon-sc0000143-1510915933:387670..387801 | Clytia hemisphaerica | exon |
| TCONS_00012271-exon-sc0000143-1575043694:387670..387801 | TCONS_00012271-exon-sc0000143-1575043694:387670..387801 | Clytia hemisphaerica | exon |
| TCONS_00012271-exon-sc0000143-1491911889:389196..389968 | TCONS_00012271-exon-sc0000143-1491911889:389196..389968 | Clytia hemisphaerica | exon |
| TCONS_00012271-exon-sc0000143-1510915933:389196..389968 | TCONS_00012271-exon-sc0000143-1510915933:389196..389968 | Clytia hemisphaerica | exon |
| TCONS_00012271-exon-sc0000143-1575043694:389196..389968 | TCONS_00012271-exon-sc0000143-1575043694:389196..389968 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:378729..389968 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0005622 |
intracellular |
| cellular_component |
GO:0005840 |
ribosome |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
BLAST of TCONS_00012271 vs. Swiss-Prot (Human)
Match: RS6 (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 2.379e-96 Identity = 151/214 (70.56%), Postives = 178/214 (83.18%), Query Frame = 1
Query: 220 MKLNIAYPANGSQKLVEIDDEIKLRPFFEKRMAQEVSLDCLGDEFKGYIARISGGNDKQGFPMKQGVMTNGRVKLLLKKGHSCYRTRRAGERKRKSVRGCIVDSNLAVLNFVLIKKGEQEIPGLTDRVVPRRLGPKRVGKIRKLFNLSKEDDVTQYIIRXXXXXXXXXXXXXXXXXXXXXXQRLVTPQRLQRKRKVLALKRDRCNKAKQEAAAY 861
MKLNI++PA G QKL+E+DDE KLR F+EKRMA EV+ D LG+E+KGY+ RISGGNDKQGFPMKQGV+T+GRV+LLL KGHSCYR RR GERKRKSVRGCIVD+NL+VLN V++KKGE++IPGLTD VPRRLGPKR +IRKLFNLSKEDDV QY++R E KKP+TKAPKIQRLVTP+ LQ KR+ +ALK+ R K K+EAA Y
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVR-----KPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEY 209
The following BLAST results are available for this feature:
|
