TCONS_00011547-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011547-protein
Unique NameTCONS_00011547-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1468

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011547-protein ID=TCONS_00011547-protein|Name=TCONS_00011547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1468bp
MEVKEELASIKMELKCWESMFYRKYQRKPTKEDINQSTPEIQDSYKRYAK
LRNKSSDKTPVKPVEPEADDGVFGASLNKKHSTPKNEPKQNFIKHDNTVS
WRPKLKALKRPTPNRDKDKSADEQVIEPSQVELSKQDDIVEVPAILDHVA
QDNVKSTTPLPSMSRKSLGSVKRNRCSLLPTNNNDDSMEWLESCKQSLEK
KTEKEVTSKSDDKTNTVTSLEQKSHKPDHQDAVDKVSHDPIEKENSKPVN
QRTISMEELVNGKHLDEAKEQGGDSAADNKKRTSAKSERTNNISKDDKDV
FDFEKEDESKRTVKQNDTAEKIKPKDTRKRTKKVKENADNENATLAVEGE
TKENTSKKKVGGKRKRAAEEENGDETVEKETKKVKVSKKAAPAKGKKLVS
ENFVKIDLRKKTYVRGIKKISASTQKRRAWKAKTSFEQPSKFGKKICFKC
GGEGHWAKFCRGRPKQVDLFKRLDEEKLSLEYRSLAEQNGSCFDQLYGNA
DENAPSLLENAKKFTIDDVLDIKPCWPRTPYITDCQPKPVEPLIQPECDQ
PSQNAYKEAKKALKNFGFNSFREGQHEATARILSGLSTLVILATGSGKSL
CYQLPAYMYYNERKWLTLVVSPLVALMQDQVAGLPDCLPGAALNSNMTKL
QQQKVVTKLKEGKIAILLVSPEALVSGGFGTGILPPKSSLPPIGFACIDE
AHCLSEWSHNFRPSYLKVCKVLRERYQIGCLLGLTATASNKTAKSVIQHL
GVPDEGSIIRDPSPIPDNLQLTASRDERRDIALVELLHNEPFVKCDSIIV
YVTRRMDCDRLAVLLRTSLPEFVRDEKSEGEEEERNKVKKKKVIKTRTRK
KDMDKPTWWNCEAYHAGLSPAQRKRVQNQFMAGDLRIVVATVAFGMGLDK
SDVRSVIHYNMPKSFENYVQEIGRAGRDGKPSFCHVFLEDEVTDLCELKR
HIYGDTVDRSAITRFVDLLFPVCDCQEKYEKQSGEVQVRNSLEDDEFFRQ
KLDESDLELLFAEDFLPDEDDVCDSKDQQVVGTSNEESAVVSGKVDSDSE
CSNDGEHGRDESMDDFHDEEKEYVPNVDGKAFRDIDPLYCSNSPTPTTSS
DEPNTDSKASEDIDFTEETIRKSGSDLDMEMEPKEGVFDESTPEDEDLRT
ECVCSGHRRSISSDRLINDLDMREEVISTFLAYLELHPKTWLRMLNPLRA
TCIIKCYGGPEQFQMMAKKFPPVALALRYLLPQDELTNLHERRQLEFDFV
EVADLMCWDVLTVLRELKALQWNMSFALDSRLNTTGKSGIIVQTENLSFH
FTTASNVDDDGRDEIIGFIHQTVLNQEETRLLQLDALYCVLKELSCKTYE
QIPADRRIDVKARQQIGQFFLCKEEQQKPFLRELITDDLKIDTPQRRWNN
IASDIRSLVNSYPDSQFNGRAIARIFQGIDSPRFPALGYGRDRRFWRQYL
DVDFNELRKFAIRELMRT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006470XLOC_006470Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011547TCONS_00011547Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR021110DNA_rep_checkpnt_protein
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 446..462
e-value: 0.0043
score: 25.8
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 436..555
e-value: 3.4E-7
score: 29.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 447..461
score: 9.274
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 435..467
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 846..929
e-value: 1.8E-21
score: 87.3
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 858..928
e-value: 2.2E-15
score: 56.9
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 787..969
score: 17.48
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 567..768
e-value: 9.4E-22
score: 88.3
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 579..756
score: 20.94
NoneNo IPR availableGENE3D3.40.50.300coord: 556..761
e-value: 1.4E-25
score: 89.4
NoneNo IPR availableGENE3D3.40.50.300coord: 767..1064
e-value: 9.0E-36
score: 122.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1020..1066
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1084..1112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..384
NoneNo IPR availableCDDcd00079HELICccoord: 776..937
e-value: 4.96959E-25
score: 102.316
NoneNo IPR availableCDDcd00046DEXDccoord: 587..737
e-value: 3.29038E-15
score: 73.9108
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 574..744
e-value: 1.8E-15
score: 57.0
IPR021110DNA replication/checkpoint proteinPFAMPF11719Drc1-Sld2coord: 8..130
e-value: 2.5E-10
score: 40.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 582..817
coord: 857..939

Blast
BLAST of TCONS_00011547-protein vs. Swiss-Prot (Human)
Match: RECQ4 (ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1)

HSP 1 Score: 436.802 bits (1122), Expect = 5.014e-131
Identity = 241/583 (41.34%), Postives = 330/583 (56.60%), Query Frame = 0
Query:  402 NFVKIDLRKKTYVRGIKKISASTQKRRAWKAKTSFEQPSKFGKKICFKCGGEGHWAKFCRGRPKQVDLFKRLDEEKLSLEYRSLAEQNGSCF-DQLYGNADENAPSLLENAKKFTIDDVLDIKPCWPRTPYITDCQPKPVEPLIQPECDQ-----PSQNAYK---EAKKALKNFGFNSFREGQHEATARILSGLSTLVILATGSGKSLCYQLPAYMYYNERKWLTLVVSPLVALMQDQVAGLPDCLPGAALNSNMTKLQQQKVVTKLKEGKIAILLVSPEALVSGGFGTGILPPKSSLPPIGFACIDEAHCLSEWSHNFRPSYLKVCKVLRERYQIGCLLGLTATASNKTAKSVIQHLGVPDEGSIIRDPSPIPDNLQLTASRDERRDIALVELLHNEPFVKCDSIIVYVTRRMDCDRLAVLLRTSLPEFVRDEKSEGEEEERNKVKKKKVIKTRTRKKDMDKPTWWNCEAYHAGLSPAQRKRVQNQFMAGDLRIVVATVAFGMGLDKSDVRSVIHYNMPKSFENYVQEIGRAGRDGKPSFCHVFLEDEVTDLCELKRHIYGDTVDRSAITRFVDLLFPVCDC 975
            N+V++++++K YVRG + + +   +++AWK K          K  CF  GG                               +      SCF ++ + +     P      +  + +D   + P     P +   QP P  P + P         PS    +   E  +AL+  G  +FR GQ  A  RILSG+STL++L TG+GKSLCYQLPA +Y      LTLVVSPL++LM DQV+GLP CL  A ++S MT+ Q++ V+ K++  ++ +L+++PEALV    G G LPP + LPP+ FACIDEAHCLS+WSHNFRP YL+VCKVLRER  + C LGLTATA+ +TA  V QHL V +E   +  P+P+P NL L+ S D   D AL+ LL  + F   DSII+Y  RR D +R+A LLRT L                       V  +  R            EAYHAG+   +R+RVQ  FM G LR+VVATVAFGMGLD+ DVR+V+H  +P SFE+YVQ +GRAGRDG+P+ CH+FL+ +  DL EL+RH++ D+ D  A+ R V  +FP C C
Sbjct:  352 NYVRLNMKQKHYVRG-RALRSRLLRKQAWKQKWR-------KKGECFGGGG-------------------------------ATVTTKESCFLNEQFDHWAAQCP------RPASEEDTDAVGP----EPLVPSPQPVPEVPSLDPTVLPLYSLGPSGQLAETPAEVFQALEQLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSLMDDQVSGLPPCLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPEALV----GAGGLPPAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATATRRTASDVAQHLAVAEEPD-LHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRREDTERIAALLRTCL-------------------HAAWVPGSGGRAPKT------TAEAYHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQPQGEDLRELRRHVHADSTDFLAVKRLVQRVFPACTC 855          

HSP 2 Score: 182.185 bits (461), Expect = 2.855e-46
Identity = 108/324 (33.33%), Postives = 166/324 (51.23%), Query Frame = 0
Query: 1153 VCSGHRRSISSDRLINDLDMREEVISTFLAYLELHPKTWLRMLNPLRATCIIKCYGGPEQFQMMAKKFPPVALALRYLLPQDELTNLHERRQLEFDFVEVADLMCWDVLTVLRELKALQWNMSFALDSRLNTTGKSGIIVQTENLSFHFTTASNVDDDGRDEIIGFIHQTVLNQEETRLLQL----DALYCVLKELSCKTYEQIPADRRIDVKARQQIGQFFLCKEEQQKPFLRELITDDLKIDTPQRR---W-NNIASDIRSLVNSYPDSQFNGRAIARIFQGIDSPRFPALGYGRDRRFWRQYLDVDFNELRKFAIRELMRT 1468
            VC GH R++     +  LDM EE I T L YLELHP  WL +L      C + C GGP Q Q +A + PP+A+ L   LP+D          +EFD V++ D M W++ +V R L  LQW+     + R      +G++V+   L+FH  +  ++  + +D+I  F++  V  +E   L +L     A + V         EQ   D     + +  +G++F  +E Q+       + D    +  Q R   W + +  DIR  ++  P+ +F+ RA+ARIF GI SP +PA  YG+DRRFWR+YL + F+ L   A  EL++ 
Sbjct:  896 VCMGHERALPIQLTVQALDMPEEAIETLLCYLELHPHHWLELLATTYTHCRLNCPGGPAQLQALAHRCPPLAVCLAQQLPEDPGQG---SSSVEFDMVKLVDSMGWELASVRRALCQLQWDH----EPRTGVRRGTGVLVEFSELAFHLRSPGDLTAEEKDQICDFLYGRVQARERQALARLRRTFQAFHSVAFPSCGPCLEQ--QDEERSTRLKDLLGRYFEEEEGQEP----GGMEDAQGPEPGQARLQDWEDQVRCDIRQFLSLRPEEKFSSRAVARIFHGIGSPCYPAQVYGQDRRFWRKYLHLSFHALVGLATEELLQV 1206          
The following BLAST results are available for this feature:
BLAST of TCONS_00011547-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RECQ45.014e-13141.34ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=R... [more]
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