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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011547 ID=TCONS_00011547|Name=TCONS_00011547|organism=Clytia hemisphaerica|type=transcript|length=4715bpRun BLAST on NCBI protein sequence of TCONS_00011547-protein >TCONS_00011547-protein ID=TCONS_00011547-protein|Name=TCONS_00011547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1468bp MEVKEELASIKMELKCWESMFYRKYQRKPTKEDINQSTPEIQDSYKRYAKRun BLAST on NCBI transcript from alignment at sc0000130:414644..425142+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011547 ID=TCONS_00011547|Name=TCONS_00011547|organism=Clytia hemisphaerica|type=transcript|length=10499bp|location=Sequence derived from alignment at sc0000130:414644..425142+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000130:414644..425142+ >TCONS_00011547 ID=TCONS_00011547|Name=TCONS_00011547|organism=Clytia hemisphaerica|type=CDS|length=74919bp|location=Sequence derived from alignment at sc0000130:414644..425142+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011547 vs. Swiss-Prot (Human)
Match: RECQ4 (ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1) HSP 1 Score: 412.149 bits (1058), Expect = 9.096e-121 Identity = 209/418 (50.00%), Postives = 273/418 (65.31%), Query Frame = 3
Query: 1698 EAKKALKNFGFNSFREGQHEATARILSGLSTLVILATGSGKSLCYQLPAYMYYNERKWLTLVVSPLVALMQDQVAGLPDCLPGAALNSNMXXXXXXXXXXXXXEGKIAILLVSPEALVSGGFGTGILPPKSSLPPIGFACIDEAHCLSEWSHNFRPSYLKVCKVLRERYQIGCLLGLTATASNKTAKSVIQHLGVPDEGSIIRDPSPIPDNLQLTASRDERRDIALVELLHNEPFVKCDSIIVYVTRRMDCDRLAVLLRTSLPEFVRDXXXXXXXXXXXXXXXXXXXXXXXXXXDMDKPTWWNCEAYHAGLSPAQRKRVQNQFMAGDLRIVVATVAFGMGLDKSDVRSVIHYNMPKSFENYVQEIGRAGRDGKPSFCHVFLEDEVTDLCELKRHIYGDTVDRSAITRFVDLLFPVCDC 2951
E +AL+ G +FR GQ A RILSG+STL++L TG+GKSLCYQLPA +Y LTLVVSPL++LM DQV+GLP CL A ++S MT+ Q++ V+ K++ ++ +L+++PEALV G G LPP + LPP+ FACIDEAHCLS+WSHNFRP YL+VCKVLRER + C LGLTATA+ +TA V QHL V +E + P+P+P NL L+ S D D AL+ LL + F DSII+Y RR D +R+A LLRT L + EAYHAG+ +R+RVQ FM G LR+VVATVAFGMGLD+ DVR+V+H +P SFE+YVQ +GRAGRDG+P+ CH+FL+ + DL EL+RH++ D+ D A+ R V +FP C C
Sbjct: 468 EVFQALEQLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSLMDDQVSGLPPCLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPEALV----GAGGLPPAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATATRRTASDVAQHLAVAEEPD-LHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRREDTERIAALLRTCL-------------------------HAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQPQGEDLRELRRHVHADSTDFLAVKRLVQRVFPACTC 855 HSP 2 Score: 180.259 bits (456), Expect = 1.745e-45 Identity = 105/320 (32.81%), Postives = 164/320 (51.25%), Query Frame = 3
Query: 3483 VCSGHRRSISSDRLINDLDMREEVISTFLAYLELHPKTWLRMLNPLRATCIIKCYGGPEQFQMMAKKFPPVALALRYLLPQDELTNLHERRQLEFDFVEVADLMCWDVLTVLRELKALQWNMSFALDSRLNTTGKSGIIVQTENLSFHFTTASNVDDDGRDEIIGFIHQTVLNQEETRLLQL----DALYCVLKELSCKTYEQIPADRRIDVKARQQIGQFFLCKEEQQKPFLRELITDDLKIDTPQRRWNNIASDIRSLVNSYPDSQFNGRAIARIFQGIDSPRFPALGYGRDRRFWRQYLDVDFNELRKFAIRELMRT 4430
VC GH R++ + LDM EE I T L YLELHP WL +L C + C GGP Q Q +A + PP+A+ L LP+D +EFD V++ D M W++ +V R L LQW+ + R +G++V+ L+FH + ++ + +D+I F++ V +E L +L A + V EQ D + + +G++F +E Q+ + + + Q + + DIR ++ P+ +F+ RA+ARIF GI SP +PA YG+DRRFWR+YL + F+ L A EL++
Sbjct: 896 VCMGHERALPIQLTVQALDMPEEAIETLLCYLELHPHHWLELLATTYTHCRLNCPGGPAQLQALAHRCPPLAVCLAQQLPEDPGQG---SSSVEFDMVKLVDSMGWELASVRRALCQLQWDH----EPRTGVRRGTGVLVEFSELAFHLRSPGDLTAEEKDQICDFLYGRVQARERQALARLRRTFQAFHSVAFPSCGPCLEQ--QDEERSTRLKDLLGRYFEEEEGQEPGGMEDAQGPEPGQARLQDWEDQVRCDIRQFLSLRPEEKFSSRAVARIFHGIGSPCYPAQVYGQDRRFWRKYLHLSFHALVGLATEELLQV 1206 The following BLAST results are available for this feature:
BLAST of TCONS_00011547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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