TCONS_00009614-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009614-protein
Unique NameTCONS_00009614-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length194

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009614-protein ID=TCONS_00009614-protein|Name=TCONS_00009614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MKQSVLFYRFIHRFIYYINVSSFISNNYKTILNKMAEVLEVGIDREDEFE
VDDDEEMNRLKSSKSRKKKGRGFKESADARSNEPFESIEDEKGDITGPQK
SVEGWILFVTNVHEEAQEDDLHNLFGDHGNIRNMHLNLDRRTGFLKGYAL
VEYETFKEAQNAIDACHGEDLLGQKLEVGWAFTKGVVKTKRRKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005367XLOC_005367Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009614TCONS_00009614Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008111RNA-bd_8
IPR000504RRM_dom
IPR033744RRM_RBM8
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0003729mRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 186..194
NoneNo IPR availableGENE3D3.30.70.330coord: 39..194
e-value: 4.0E-26
score: 91.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..93
IPR008111RNA-binding motif protein 8PRINTSPR01738RNABINDINGM8coord: 170..182
score: 51.54
coord: 152..168
score: 57.06
coord: 62..74
score: 48.46
coord: 96..110
score: 83.33
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 106..179
e-value: 2.0E-19
score: 80.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 107..176
e-value: 1.0E-16
score: 60.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 105..183
score: 15.272
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 96..188
IPR033744RBM8, RNA recognition motifCDDcd12324RRM_RBM8coord: 99..185
e-value: 6.74166E-56
score: 173.172

Blast
[Close]
BLAST of TCONS_00009614-protein vs. Swiss-Prot (Human)
Match: RBM8A (RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.223e-46
Identity = 80/152 (52.63%), Postives = 113/152 (74.34%), Query Frame = 0 
Query:   35 MAEVLEVGIDREDEFEVDDD-EEMNRLKSSKSRKKKGRGF--KESADARSNEPFESIEDEKGDITGPQKSVEGWILFVTNVHEEAQEDDLHNLFGDHGNIRNMHLNLDRRTGFLKGYALVEYETFKEAQNAIDACHGEDLLGQKLEVGWAFT 183
            MA+VL++     ++F +D+D +E       K++K+KGRGF  +E + AR  E ++S+E + GD  GPQ+SVEGWILFVT VHEEA E+D+H+ F ++G I+N+HLNLDRRTG+LKGY LVEYET+KEAQ A++  +G+DL+GQ + V W F 
Sbjct:    1 MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVE-QDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 151
The following BLAST results are available for this feature:
BLAST of TCONS_00009614-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM8A2.223e-4652.63RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE... [more]
back to top