TCONS_00009614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009614
Unique NameTCONS_00009614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1015

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009614 ID=TCONS_00009614|Name=TCONS_00009614|organism=Clytia hemisphaerica|type=transcript|length=1015bp
ggaaaaaattcaatttggcggattttgaccaaatccgccaaatttacttc
ccgccaaaatttcttcctataATGTACACTTGAACAACCAAAACACTGGT
TTTATGTATGTTTgaaaagtttctgctcgtgaaagtttgtacgtctAAAG
TAAGTAAAAGTTGAAAGGTTTAAATGAAACAAACTGATGATTTGCTGTTA
ATATGAAGCAGTCAGTTTTATTTTATCGCTTCATTCATCGCTTTATTTAC
TACATTAATGTTTCTTCATTCATCAGTAATAATtacaaaacaattttaaa
taaaatggcAGAAGTTCTTGAAGTTGGCATTGACAGAGAAGATGAGTTTG
AAGTCGATGATGATGAAGAGATGAATCGACTGAAGTCCAGTAAATCAAGA
AAGAAGAAGGGAAGAGGGTTCAAAGAAAGTGCAGACGCCAGATCAAACGA
ACCATTTGAAtcaattgaagatgagaaaggAGATATTACTGGTCCACAAA
AATCGGTGGAGGGTTGgattttgtttgtaacaaacgTCCACGAAGAAGCC
CAAGAGGATGATTTGCACAATCTGTTTGGTGACCATGGAAACATCCGAAA
TATGCATCTTAATTTAGATCGAAGAACTGGTTTTCTGAAGGGATATGCTT
TGGTCGAATACGAGACCTTCAAAGAAGCACAAAATGCAATCGACGCCTGT
CATGGGGAAGATTTACTGGGTCAGAAATTAGAAGTTGGATGGGCCTTCAC
CAAAGGTGTCGTCAAAACCAAAAGGAGAAAGCGTTGAAATGTCCAGAGAA
TGAAATGTTTGTCAATGTCTCTCACGCTGAGATAACAGGAATAATTCAAC
AACTCATCTGGGATTTGGTTTCGAGTTCTTCTACTCGTAAACTAATTCAA
AAATTCAACCCTTATACTTGTAAATAAGCTTTGTTTTATCACCGAAAGAT
AACCAGCAACATGGatgctttgattttttaaagaatgtctatgattttgg
tttttttgaattttt
Run BLAST on NCBI

protein sequence of TCONS_00009614-protein

>TCONS_00009614-protein ID=TCONS_00009614-protein|Name=TCONS_00009614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MKQSVLFYRFIHRFIYYINVSSFISNNYKTILNKMAEVLEVGIDREDEFE
VDDDEEMNRLKSSKSRKKKGRGFKESADARSNEPFESIEDEKGDITGPQK
SVEGWILFVTNVHEEAQEDDLHNLFGDHGNIRNMHLNLDRRTGFLKGYAL
VEYETFKEAQNAIDACHGEDLLGQKLEVGWAFTKGVVKTKRRKR
Run BLAST on NCBI

transcript from alignment at sc0000097:51581..56478-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009614 ID=TCONS_00009614|Name=TCONS_00009614|organism=Clytia hemisphaerica|type=transcript|length=4898bp|location=Sequence derived from alignment at sc0000097:51581..56478- (Clytia hemisphaerica)
GGAAAAAATTCAATTTGGCGGATTTTGACCAAATCCGCCAAATTTACTTC
CCGCCAAAATTTCTTCCTATAATGTACACTTGAACAACCAAAACACTGGT
TTTATGTATGTTTGAAAAGTTTCTGCTCGTGAAAGTTTGTACGTCTAAAG
TAAGTAAAAGTTGAAAGGTTTAAATGAAACAAACTGATGATTTGCTGTTA
ATATGAAGCAGTCAGTTTTATTTTATCGCTTCATTCATCGCTTTATTTAC
TACATTAATGTTTCTTCATTCATCAGTAATAATTACAAAACAATTTTAAA
TAAAATGGCAGAAGTTCTTGAAGTTGGCATTGACAGAGAAGATGAGTTTG
AAGTCGATGATGATGGTGAGTTTTTTCTGGTTTACTGCAAAACATCAAAT
TATTTTAACCTCATGAAAATATTTCAATTTTACTGCAAAACATCAAATTA
TTTTAACCTCATGAAAATATTTCAATTTTACTGCAAAACATCAAATTATT
TTAACCTCATGAAAATATTTCAATTTTACTGCAAAACATCAAATTATTTT
AACCTCATGAAAATATTTCAATTTTACTGCAAAACATCAAATTATTTTAA
CCTCATGAAAATATTTCAATTTTACTGCAAAACATCAAATTATTTTAACC
TCATGAAAATATTTCAATTTTACTGCAAAACATCAAATTATTTTAACCTC
ATGAAAATATTTCAATTTTACTGCAAAACATCAAATTATTTTAACCTCAT
GAAAATATTTCAATTTTACTGCAAAACATCAAATTATTTTAACCTCATGA
AAATATTTCAATTTTACTGCAAAACATCAAATTATTTTAACCTCATGAAA
ATATTTCAATTTTACTGCAAAACATCAAATTATTTTAACCTCATGAAAAT
ATTTCAATTTTACTGCAAAACATCAAATTATTTTAACCTCATGAAAATAT
TTCAATTTTACTGCAAAACATCAAATTATTTTAACCTCATGAAAATATTT
CAATTTTACTGCAAAACATCAAATTATTTTAACCTCATGAAAATATTTCA
ATTTTACTGCAAAACATCAAATTATTTTAACCTCATGAAAATATTTCAAT
TTTACTGCAAAACATCAAATTATTTTAACCTCATGAAAATATTTCAATTT
TACTGCAAAACATCAAATTATTTTAACCTCATGAAAATATTTCAATTTTA
CTGCAAAACATCAAATTATTTTAACCTCATGAAAATATTTCAATTTTACC
CCTCCGCTCACCTTTCCGAATGGGTTTAGGTGAGCAATAAGAGAGGAGAA
GGTTTTAAAAGACAATGTTATTCTCCAGAAAAAGTTACTAAAAAGTTTCT
AATAGCTCCCAAAAGCAAAACAGGTTAAAAATTATATGGGAGTTGAAGGT
TTGACTTTTTAACCGCTTTTAACCTTTTTTTACCTGTTCTGCTCTATTCA
GGTGGAAAATGCGGTGAGAAGAAAGTCAAATGTTTTTTAATGTTTCCAAT
TTCACAAAAAGCATTGATTTTCAATGAGACTGTCTACAGTTTTCAACCTA
AGCACACTGCATCTAGAAAGATGTTTGAAGAGTTTTAGCCAAAATAGATT
TGTTAATTTTTTTTTCACTACTTCTTTTATTTAGAAGAGATGAATCGACT
GAAGTCCAGTAAATCAAGAAAGAAGAAGGGAAGAGGGTTCAAAGGTATTT
AAAAAAGATAACAATTATTTTAATAAAAAGAAAAAAGCAGCCAAATGTCT
TCGATTTCTCTTTTCAAAATGTGGATTGAAATTTATGATTAGAGAATGGC
CACTTTTTAAAAAAGTTAAAAAATTCTTGAAATACCACGAAAAAAAAAAA
TCTCTTATTTTAAAGGTTTTGTTTTAAATAAGAGTGACATCAATTGGCTA
CTCATCCATTTTAATTTACAAGCTTTTTCACATTGAATTGACACGGATGT
GGAGCAAGATTGGTCAGAAAGAAGAAGAGAAAAACATATTTTTGCTTTTA
TCAGCACAATATAACAATAGACAGACACTGTCGTGATACGAAATATGTGT
CTGATATGAAATGGGAACATTTTATGTAAGAATAAAACTTTTGGAATAGG
GCTGATTACTGATACTTAATTTTGATATTTGACATAGAAAGTGCAGACGC
CAGATCAAACGAACCATTTGAATCAATTGAAGATGAGAAAGGAGATATTA
CTGGTCCACAAAAATGTAAGAAGGGATTTTCTGGATAGGGTAGAAAGTGA
GTTGAAGGGCACAACAGGCTTACGTATCTCATCTATCAATACACCTTTTT
GACCATAGCCACCAATTTTCGCGTGGACATTTCTTTTGCCCGCTTTATCC
AACTAAAACCGTCCTAGTCCTTTTTTCGCACCAATAGATAATAGAAAAAT
GCGTCAAATAAGGATTAGGATGGTTTTAGTGGGATGAAGCAGACAAAAAA
ATGCCAGCACGACTATAGTCGAAAAGGTGTATCTTCTCTTTAAAAGATTT
TCATTAGCTACCTCGTTTATCCAATCAGAATATAAGTGAAATCAAGCATT
AGGCTTGCTCAATTCTATAGTGAGCGAGGCTAGGTACAAGGTTTTACCTG
ATGTTTTTAAAACTTTTCCAAGTGTTTTTTAAAGCAGAAAAAACTGTAAA
AGAAGACACGCCAATACTTTTCTTGCAATTGTACACGCTTTTTTTATTTT
TCTAAGAATAAAACTTCAATGAATAATGCGTAGCAAACATCCAAAGAGTG
CACTTAATACAGTTGTAGTGCTTTATAAATATGTATTTTCCAAAAATCAA
AATGTTAAAAACATAACTAAAAGTTTCATGCACTTACGTACAATCATCAG
AATAACTTCTATAAGAATATCAGGGTGAGATTTAAGAGCTAGAACAATAG
GCTTATTGTTTAGAACAATAGAAAAATAAGACTAATGCTCACCCTCAGCC
AAAGTACGCTATTCTTATAAAAAAAGCGTGTTTATCATGATAACGTTACA
ACAGGGTGAGAAATGCATCAAAATTTTCCTTTTTCTGCCTTCCTTTTCTG
CCATGTTTTTAAGTAACCTATGGCTAACCGTACAATATCTCGATTTTATT
CAACCTTACTTTCTTCTCAGCGGTGGAGGGTTGGATTTTGTTTGTAACAA
ACGTCCACGAAGAAGCCCAAGAGGATGATTTGCACAATCTGTTTGGTGAC
CATGGAAACATCCGAAATATGCATCTTAATTTAGATCGAAGAACTGGTTT
TCTGAAGGTATAATATTTTTGTCTTCTATCAGGCGAGACCAATTTTATTT
GTTGTTCTACGGGTGCGACCGACCCAGCATTTACTGCAAACGAAAAAATA
ATAATATTGAATTTCCGATGCCACAAATTTATACTAGTCATTTAAAAAAT
AGTCGAATCTAGAATCATGAATTCTATGCACAAAAGATTTTATTACAAAT
TCCATCAAAAATGAATGATGAATTTCTAACCAAGATTATTTGAAAATATT
ACTTAAGCCTAATTTCCTTCCTTGATTAATGAAAATCTTATTTTTATTTT
ACCGACCGGCCGACTCATATTTTGTCAACGATTTGCCCGTAGAACAACAA
ACTAAATTGGTTTCGCCTCAGCACACTTTACCTTAAGGGGATTAATTTAA
TACTCGCGAAAATTAATATTGTGTAGTTTGCACAAGGTTTGTCTCCTGAA
ATCTCAAAAACCCTTAGGACATTGAAAGAAAATTGTCAAAGAAGGCATTA
TCTCGCGAAAATAAGTCCCGCAAAAATCAAATTATTTCCGGCGAAAATAA
GTTCTCGCGAATATTAATCCCCTTAAAGTAGTTAAATTTTAATGGTACAT
GGTTAAAGTACAAGCAGAATTTATCCTTTGCTGGAAACTGTCGAACTCAA
ATTCAAGGCTCTTGAAACATTCTTAAGCAAACTTGACCTTCAACCTGTGT
AGCACTAACTGAAAAATTTCATTCTACATTTTAGGGATATGCTTTGGTCG
AATACGAGACCTTCAAAGAAGCACAAAATGCAATCGACGCCTGTCATGGG
GAAGATTTACTGGGTCAGAAATTAGAAGTTGGATGGGCCTTCACCAAAGG
TGTCGTCAAAACCAAAAGGAGGTAAGAAGATTTTGCAAAGAGCAACAGAT
AACAGATTTAGAAATTTAAAAAAAGATTGTGAATTATTAACAAAACAACC
CAAATTTGAAATTTCTCCTTGTCTATATGAGAGCTCATTACAAGCGGGAG
ATTCAACGCTTTTCTAAGTCCCAGAGTTCGAGATTCAGAAAAAGCCTTAC
AACAGGTTTTCGTAGGGAACCCCTTAGATCAGGGCAAATTTTTGATTTTA
TGCTTCTAATAGGGTGTAGAATTGACAAAAAAAATTGNACCCCTTAGATC
AGGGCAAATTTTTGATTTTATGCTTCTAATAGGGGGTAGAATTGACAAAA
AAAATTGCCTCTCGAATCTCCCGCTTGTAATGAGCTCTCATATAGACAAG
GAGAAATTTCAAATTTGGGTTGTTTTGTTAATAATTCACATTCTTTTTAA
AATTTCTATAAATCTGTTATCTATATTAGCCCCCTGAAAATTTTCTGGCT
TGTATATGTACTAAAGGGTGGTTTTTTATATCGTCATTTTTTCACTTCGT
CTATTTGTAGAAAGCGTTGAAATGTCCAGAGAATGAAATGTTTGTCAATG
TCTCTCACGCTGAGATAACAGGAATAATTCAACAACTCATCTGGGATTTG
GTTTCGAGTTCTTCTACTCGTAAACTAATTCAAAAATTCAACCCTTATAC
TTGTAAATAAGCTTTGTTTTATCACCGAAAGATAACCAGCAACATGGATG
CTTTGATTTTTTAAAGAATGTCTATGATTTTGGTTTTTTTGAATTTTT

Coding sequence (CDS) from alignment at sc0000097:51581..56478-

>TCONS_00009614 ID=TCONS_00009614|Name=TCONS_00009614|organism=Clytia hemisphaerica|type=CDS|length=3510bp|location=Sequence derived from alignment at sc0000097:51581..56478- (Clytia hemisphaerica)
AAAGCGTTGAGGATATGCTTTGGTCGAATACGAGACCTTCAAAGAAGCAC
AAAATGCAATCGACGCCTGTCATGGGGAAGATTTACTGGGTCAGAAATTA
GAAGTTGGATGGGCCTTCACCAAAGGTGTCGTCAAAACCAAAAGGAGCGG
TGGAGGGTTGGATTTTGTTTGTAACAAACGTCCACGAAGAAGCCCAAGAG
GATGATTTGCACAATCTGTTTGGTGACCATGGAAACATCCGAAATATGCA
TCTTAATTTAGATCGAAGAACTGGTTTTCTGAAGAAAGTGCAGACGCCAG
ATCAAACGAACCATTTGAATCAATTGAAGATGAGAAAGGAGATATTACTG
GTCCACAAAAATAAGAGATGAATCGACTGAAGTCCAGTAAATCAAGAAAG
AAGAAGGGAAGAGGGTTCAAAGATGAAGCAGTCAGTTTTATTTTATCGCT
TCATTCATCGCTTTATTTACTACATTAATGTTTCTTCATTCATCAGTAAT
AATTACAAAACAATTTTAAATAAAATGGCAGAAGTTCTTGAAGTTGGCAT
TGACAGAGAAGATGAGTTTGAAGTCGATGATGATGAAAGCGTTGAGGATA
TGCTTTGGTCGAATACGAGACCTTCAAAGAAGCACAAAATGCAATCGACG
CCTGTCATGGGGAAGATTTACTGGGTCAGAAATTAGAAGTTGGATGGGCC
TTCACCAAAGGTGTCGTCAAAACCAAAAGGAGCGGTGGAGGGTTGGATTT
TGTTTGTAACAAACGTCCACGAAGAAGCCCAAGAGGATGATTTGCACAAT
CTGTTTGGTGACCATGGAAACATCCGAAATATGCATCTTAATTTAGATCG
AAGAACTGGTTTTCTGAAGAAAGTGCAGACGCCAGATCAAACGAACCATT
TGAATCAATTGAAGATGAGAAAGGAGATATTACTGGTCCACAAAAATAAG
AGATGAATCGACTGAAGTCCAGTAAATCAAGAAAGAAGAAGGGAAGAGGG
TTCAAAGATGAAGCAGTCAGTTTTATTTTATCGCTTCATTCATCGCTTTA
TTTACTACATTAATGTTTCTTCATTCATCAGTAATAATTACAAAACAATT
TTAAATAAAATGGCAGAAGTTCTTGAAGTTGGCATTGACAGAGAAGATGA
GTTTGAAGTCGATGATGATGAAAGCGTTGAGGATATGCTTTGGTCGAATA
CGAGACCTTCAAAGAAGCACAAAATGCAATCGACGCCTGTCATGGGGAAG
ATTTACTGGGTCAGAAATTAGAAGTTGGATGGGCCTTCACCAAAGGTGTC
GTCAAAACCAAAAGGAGCGGTGGAGGGTTGGATTTTGTTTGTAACAAACG
TCCACGAAGAAGCCCAAGAGGATGATTTGCACAATCTGTTTGGTGACCAT
GGAAACATCCGAAATATGCATCTTAATTTAGATCGAAGAACTGGTTTTCT
GAAGAAAGTGCAGACGCCAGATCAAACGAACCATTTGAATCAATTGAAGA
TGAGAAAGGAGATATTACTGGTCCACAAAAATAAGAGATGAATCGACTGA
AGTCCAGTAAATCAAGAAAGAAGAAGGGAAGAGGGTTCAAAGATGAAGCA
GTCAGTTTTATTTTATCGCTTCATTCATCGCTTTATTTACTACATTAATG
TTTCTTCATTCATCAGTAATAATTACAAAACAATTTTAAATAAAATGGCA
GAAGTTCTTGAAGTTGGCATTGACAGAGAAGATGAGTTTGAAGTCGATGA
TGATGAAAGCGTTGAGGATATGCTTTGGTCGAATACGAGACCTTCAAAGA
AGCACAAAATGCAATCGACGCCTGTCATGGGGAAGATTTACTGGGTCAGA
AATTAGAAGTTGGATGGGCCTTCACCAAAGGTGTCGTCAAAACCAAAAGG
AGCGGTGGAGGGTTGGATTTTGTTTGTAACAAACGTCCACGAAGAAGCCC
AAGAGGATGATTTGCACAATCTGTTTGGTGACCATGGAAACATCCGAAAT
ATGCATCTTAATTTAGATCGAAGAACTGGTTTTCTGAAGAAAGTGCAGAC
GCCAGATCAAACGAACCATTTGAATCAATTGAAGATGAGAAAGGAGATAT
TACTGGTCCACAAAAATAAGAGATGAATCGACTGAAGTCCAGTAAATCAA
GAAAGAAGAAGGGAAGAGGGTTCAAAGATGAAGCAGTCAGTTTTATTTTA
TCGCTTCATTCATCGCTTTATTTACTACATTAATGTTTCTTCATTCATCA
GTAATAATTACAAAACAATTTTAAATAAAATGGCAGAAGTTCTTGAAGTT
GGCATTGACAGAGAAGATGAGTTTGAAGTCGATGATGATGAAAGCGTTGA
GGATATGCTTTGGTCGAATACGAGACCTTCAAAGAAGCACAAAATGCAAT
CGACGCCTGTCATGGGGAAGATTTACTGGGTCAGAAATTAGAAGTTGGAT
GGGCCTTCACCAAAGGTGTCGTCAAAACCAAAAGGAGCGGTGGAGGGTTG
GATTTTGTTTGTAACAAACGTCCACGAAGAAGCCCAAGAGGATGATTTGC
ACAATCTGTTTGGTGACCATGGAAACATCCGAAATATGCATCTTAATTTA
GATCGAAGAACTGGTTTTCTGAAGAAAGTGCAGACGCCAGATCAAACGAA
CCATTTGAATCAATTGAAGATGAGAAAGGAGATATTACTGGTCCACAAAA
ATAAGAGATGAATCGACTGAAGTCCAGTAAATCAAGAAAGAAGAAGGGAA
GAGGGTTCAAAGATGAAGCAGTCAGTTTTATTTTATCGCTTCATTCATCG
CTTTATTTACTACATTAATGTTTCTTCATTCATCAGTAATAATTACAAAA
CAATTTTAAATAAAATGGCAGAAGTTCTTGAAGTTGGCATTGACAGAGAA
GATGAGTTTGAAGTCGATGATGATGAAAGCGTTGAGGATATGCTTTGGTC
GAATACGAGACCTTCAAAGAAGCACAAAATGCAATCGACGCCTGTCATGG
GGAAGATTTACTGGGTCAGAAATTAGAAGTTGGATGGGCCTTCACCAAAG
GTGTCGTCAAAACCAAAAGGAGCGGTGGAGGGTTGGATTTTGTTTGTAAC
AAACGTCCACGAAGAAGCCCAAGAGGATGATTTGCACAATCTGTTTGGTG
ACCATGGAAACATCCGAAATATGCATCTTAATTTAGATCGAAGAACTGGT
TTTCTGAAGAAAGTGCAGACGCCAGATCAAACGAACCATTTGAATCAATT
GAAGATGAGAAAGGAGATATTACTGGTCCACAAAAATAAGAGATGAATCG
ACTGAAGTCCAGTAAATCAAGAAAGAAGAAGGGAAGAGGGTTCAAAGATG
AAGCAGTCAGTTTTATTTTATCGCTTCATTCATCGCTTTATTTACTACAT
TAATGTTTCTTCATTCATCAGTAATAATTACAAAACAATTTTAAATAAAA
TGGCAGAAGTTCTTGAAGTTGGCATTGACAGAGAAGATGAGTTTGAAGTC
GATGATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005367XLOC_005367Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009614-proteinTCONS_00009614-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009614-exon-sc0000097-1575043694:56114..56478TCONS_00009614-exon-sc0000097-1575043694:56114..56478Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1575043694:54785..54844TCONS_00009614-exon-sc0000097-1575043694:54785..54844Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1575043694:54264..54341TCONS_00009614-exon-sc0000097-1575043694:54264..54341Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1575043694:53222..53358TCONS_00009614-exon-sc0000097-1575043694:53222..53358Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1575043694:52358..52494TCONS_00009614-exon-sc0000097-1575043694:52358..52494Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1575043694:51581..51818TCONS_00009614-exon-sc0000097-1575043694:51581..51818Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1510915933:56114..56478TCONS_00009614-exon-sc0000097-1510915933:56114..56478Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1510915933:54785..54844TCONS_00009614-exon-sc0000097-1510915933:54785..54844Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1510915933:54264..54341TCONS_00009614-exon-sc0000097-1510915933:54264..54341Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1510915933:53222..53358TCONS_00009614-exon-sc0000097-1510915933:53222..53358Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1510915933:52358..52494TCONS_00009614-exon-sc0000097-1510915933:52358..52494Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1510915933:51581..51818TCONS_00009614-exon-sc0000097-1510915933:51581..51818Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1491911889:56114..56478TCONS_00009614-exon-sc0000097-1491911889:56114..56478Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1491911889:54785..54844TCONS_00009614-exon-sc0000097-1491911889:54785..54844Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1491911889:54264..54341TCONS_00009614-exon-sc0000097-1491911889:54264..54341Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1491911889:53222..53358TCONS_00009614-exon-sc0000097-1491911889:53222..53358Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1491911889:52358..52494TCONS_00009614-exon-sc0000097-1491911889:52358..52494Clytia hemisphaericaexon
TCONS_00009614-exon-sc0000097-1491911889:51581..51818TCONS_00009614-exon-sc0000097-1491911889:51581..51818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:51581..56478 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
229.241	215.863	356.992	401.189	301.131	247.01	173.564	178.224	161.426	143.21	95.2999	107.205	59.6026	57.8241	90.2046	91.5997	169.182	146.854	26.8113	29.4271	102.693	91.9182	111.991	96.1259	99.197	103.546	65.8485	49.984	68.3977	64.3106
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008111RNA-bd_8
IPR000504RRM_dom
IPR033744RRM_RBM8
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0003729mRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Blast
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BLAST of TCONS_00009614 vs. Swiss-Prot (Human)
Match: RBM8A (RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.630e-40
Identity = 65/110 (59.09%), Postives = 87/110 (79.09%), Query Frame = 2 
Query:  422 KESADARSNEPFESIEDEKGDITGPQKSVEGWILFVTNVHEEAQEDDLHNLFGDHGNIRNMHLNLDRRTGFLKGYALVEYETFKEAQNAIDACHGEDLLGQKLEVGWAFT 751
            +E + AR  E ++S+E + GD  GPQ+SVEGWILFVT VHEEA E+D+H+ F ++G I+N+HLNLDRRTG+LKGY LVEYET+KEAQ A++  +G+DL+GQ + V W F 
Sbjct:   43 EEGSRARMREDYDSVE-QDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 151
The following BLAST results are available for this feature:
BLAST of TCONS_00009614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM8A1.630e-4059.09RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE... [more]
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