TCONS_00009385-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009385-protein
Unique NameTCONS_00009385-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009385-protein ID=TCONS_00009385-protein|Name=TCONS_00009385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MEEFKQLKLARSCAVSLASDPVYVMKFAAQHQKDKELGLFAVAVSANNEI
KLYDQDTFCTKGCLLGHEAGLSIIKFDILHPKYLWSASNDGTIRLWDTEK
KEDNVSIVSKCDVGYASMDINCDGSILAAATERHEEQLTIKLEFWDIRKI
DEKAPKLLATFEEVHSDDITILKFHPTNSKILATGSTDGLVTILDLTTFE
EEDALVQTLNTESSVNSIGFFGPSFEYMYALTHIETIIIWKYMEGDVLTS
IIDLREKSPKSVDYVIDCHYHEVSQRLFLICGTHRGKMEVLHINLENVEA
FQTMCGGHSSTIRCIHFSNNGLLTGAEDGMICSWSFVKDGEGAPTVQTKS
KAKTPNSKKAKKRSKPYKANT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005254XLOC_005254Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009385TCONS_00009385Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 297..335
e-value: 0.038
score: 23.1
coord: 202..241
e-value: 220.0
score: 2.3
coord: 154..195
e-value: 3.4E-5
score: 33.3
coord: 57..97
e-value: 3.6E-4
score: 29.9
coord: 10..54
e-value: 290.0
score: 1.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 303..335
e-value: 0.008
score: 16.9
coord: 66..97
e-value: 0.11
score: 13.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 64..106
score: 11.244
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 162..204
score: 9.005
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 265..357
e-value: 1.6E-7
score: 29.9
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 6..264
e-value: 1.9E-28
score: 98.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 341..371
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 84..98
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 64..106
score: 10.733
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 162..204
score: 8.967
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 20..339

Blast
[Close]
BLAST of TCONS_00009385-protein vs. Swiss-Prot (Human)
Match: WDR89 (WD repeat-containing protein 89 OS=Homo sapiens GN=WDR89 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.241e-47
Identity = 116/379 (30.61%), Postives = 194/379 (51.19%), Query Frame = 0 
Query:    2 EEFKQLKLARSCAVSLASDPVYVMKFAAQH--QKDKELGLFAVAVSANNEIKLYDQDTFCTKGCLLGHEAGLSIIKFDILHPKYLWSASNDGTIRLWDTE-KKEDNVSIVSKCDVG-YASMDINCDGSILAAATERHEEQLTIKLEFWDIRKIDEKAPKL---LATFEEVHSDDITILKFHPTNSKILATGSTDGLVTILDLTTFEEEDALVQTLNTESSVNSIGFFGPSFEYMYALTHIETIIIW--KYMEGD---VLTSIIDLRE---KSPKSVDYVIDCHYHEVSQRLFLICGTHRGKMEVLHINLENVEAFQTMCGGHSSTIR--CIHFSNNGLLTGAEDGMICSWSFVKDGEGAPTVQTKSKAKTPNSKKAKKR 363
            E+F  L + + C++    +P Y++        Q  KE  L AV  S N  I++YD++         G+   L+ ++F       ++SA  DGT++ WD    +E  V +        + S DINC+  I+ A TE+ ++     L FWD R   +        L  + E HSDD+T ++FHP+N  ++ +GS+DGLV + D+    EEDALV T N+ SSV+ IG+ G  ++ +Y +TH E    W   +++ D      +I D+RE       ++DY+I   YHE +  L +I GT++G++ +++ ++  +    ++ GGH++T+R  C +  ++ LLTG ED  +  W   K G    T   K   K  +S   + R
Sbjct:    6 EQFANLHIVK-CSLG-TKEPTYLLGIDTSKTVQAGKE-NLVAVLCS-NGSIRIYDKERLNVLREFSGYPGLLNGVRF-ANSCDSVYSACTDGTVKCWDARVAREKPVQLFKGYPSNIFISFDINCNDHIICAGTEKVDDDAL--LVFWDARMNSQNLSTTKDSLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINIDNEEDALVTTCNSISSVSCIGWSGKGYKQIYCMTHDEGFYWWDLNHLDTDEPVTRLNIQDVREVVNMKEDALDYLIGGLYHEKTDTLHVIGGTNKGRIHLMNCSMSGLTHVTSLQGGHAATVRSFCWNVQDDSLLTGGEDAQLLLW---KPGAIEKTFTKKESMKIASSVHQRVR 374
The following BLAST results are available for this feature:
BLAST of TCONS_00009385-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR897.241e-4730.61WD repeat-containing protein 89 OS=Homo sapiens GN... [more]
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