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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009385 ID=TCONS_00009385|Name=TCONS_00009385|organism=Clytia hemisphaerica|type=transcript|length=2739bpRun BLAST on NCBI protein sequence of TCONS_00009385-protein >TCONS_00009385-protein ID=TCONS_00009385-protein|Name=TCONS_00009385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp MEEFKQLKLARSCAVSLASDPVYVMKFAAQHQKDKELGLFAVAVSANNEIRun BLAST on NCBI transcript from alignment at sc0000093:641372..654911+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009385 ID=TCONS_00009385|Name=TCONS_00009385|organism=Clytia hemisphaerica|type=transcript|length=13540bp|location=Sequence derived from alignment at sc0000093:641372..654911+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000093:641372..654911+ >TCONS_00009385 ID=TCONS_00009385|Name=TCONS_00009385|organism=Clytia hemisphaerica|type=CDS|length=16740bp|location=Sequence derived from alignment at sc0000093:641372..654911+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009385 vs. Swiss-Prot (Human)
Match: WDR89 (WD repeat-containing protein 89 OS=Homo sapiens GN=WDR89 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 3.639e-43 Identity = 110/352 (31.25%), Postives = 186/352 (52.84%), Query Frame = 1
Query: 22 IMEEFKQLKLARSCAVSLASDPVYVMKFAAQH--QKDKELGLFAVAVSANNEIKLYDQDTFCTKGCLLGHEAGLSIIKFDILHPKYLWSASNDGTIRLWDTE-KKEDNVSIVSKCDVG-YASMDINCDGSILAAATERHEEQLTIKLEFWDIRKIDEK---APKLLATFEEVHSDDITILKFHPTNSKILATGSTDGLVTILDLTTFEEEDALVQTLNTESSVNSIGFFGPSFEYMYALTHIETIIIW--KYMEGD---VLTSIIDLRE---KSPKSVDYVIDCHYHEVSQRLFLICGTHRGKMEVLHINLENVEAFQTMCGGHSSTIR--CIHFSNNGLLTGAEDGMICSW 1026
I E+F L + + C++ +P Y++ Q KE L AV S N I++YD++ G+ L+ ++F ++SA DGT++ WD +E V + + S DINC+ I+ A TE+ ++ L FWD R + L + E HSDD+T ++FHP+N ++ +GS+DGLV + D+ EEDALV T N+ SSV+ IG+ G ++ +Y +TH E W +++ D +I D+RE ++DY+I YHE + L +I GT++G++ +++ ++ + ++ GGH++T+R C + ++ LLTG ED + W
Sbjct: 4 IEEQFANLHIVK-CSLG-TKEPTYLLGIDTSKTVQAGKE-NLVAVLCS-NGSIRIYDKERLNVLREFSGYPGLLNGVRF-ANSCDSVYSACTDGTVKCWDARVAREKPVQLFKGYPSNIFISFDINCNDHIICAGTEKVDDDAL--LVFWDARMNSQNLSTTKDSLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINIDNEEDALVTTCNSISSVSCIGWSGKGYKQIYCMTHDEGFYWWDLNHLDTDEPVTRLNIQDVREVVNMKEDALDYLIGGLYHEKTDTLHVIGGTNKGRIHLMNCSMSGLTHVTSLQGGHAATVRSFCWNVQDDSLLTGGEDAQLLLW 348 The following BLAST results are available for this feature:
BLAST of TCONS_00009385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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