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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00008721-protein ID=TCONS_00008721-protein|Name=TCONS_00008721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1154bp
MMHQASRDGDLEKLKQELEELYVDYPEEDARKQALCHRDHWGLTPLHYAV
KYNHLEVVRMLVEKGADANVRGKKGARPIHYFTCFNRGSDASILQYLISC
EADINALDDNNFSPLHFACSKGNFKVVQILTQCDGIKIEAEDRLRNTPLH
CACSYGDIVVVDTILDCAANLLAENEAGFTPLHVACSQGHEELLNHLLTI
VENRFGFAKLASVLEMKNKEGQGLLHLAVLASHYNITKNLLERGCDVESP
MEGNDTVLHIAAVSCNTEMIELILRFMSFKVLDKPNDKGRTALHYAARFG
KHKIVSLFLKRGANINCRDNNQASPIIMASGKSGNAKTVQMMMRQEADIL
MTDREDCTALHVATKENNLEAVQMLLTSEQRKEMINMKNKDSNTCLHVAC
AHGYEDIANLLMEKGADVKSRNYNNETPLHLAAYYGQNDVVDNIIDIDNS
TINDNDSNGNSPLHMAAESGNFDVVKYLLKSGASINDKNALGLTPLEIAA
SNGQTDAAKALIWGGAASGSRCESTGLNALHYASIGGHSDMIEYLLEYCD
IEETDLTGRNALDHAIDNLNKDAVYSILSHRDWKLALRNKTIDEDKKLTT
PLRKLIKRMPDVAQFVFDRCISSPEDLPVDNPDYELVLNYEFIDDVYNDW
PCDIVRYEAEEGQKKGDVFTRKKIQRIMEQKETHTFSYMVAYDREDLVSH
PLIQASLNKKWQKFAAYLYYFKLLLYVCFLTSLTGYILVTAPLREPYRSK
DCTIVQENATWEMIVFVHYGKFAVIILALLHLIFEIVQMIGQLGDYLQLD
NLLEWIIYILAIANVIDDFIVLPFLRNGLICGMYQKSFGSLALFLSWLNF
VLFMRKVPVFGIYIVMFLYVFKTFFKFFVVFIFFIATFAFAFFILLRDGQ
SPAFKNPWTSLVKVGVMMTGEMGFDELFFYGGGKVDPILWIIFIIFVLVL
NIILMNLLVGLAVDDIAGVQKQAEMTKSTMQIDICLQAEITLPKMFRTRF
VVKSQKLRPNKDDLPNNISMKSYIKIKEILLKSKEAENSVQDSLKALQHD
MTQLTDRVSKINDELTDIELLNGKLSDLKAMMKDIWKHQRRKAKKQKAEI
SPKEGGQQEIKRDETKTEDDTFDDTTHAQDDTTHGAQTLDEEAVGVGDEG
PGEE Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0005216 | ion channel activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 11..31 |
| None | No IPR available | COILS | Coil | Coil | coord: 1044..1064 |
| None | No IPR available | GENE3D | 1.20.120.350 | | coord: 934..1134
e-value: 1.9E-4
score: 20.2 |
| None | No IPR available | PFAM | PF13857 | Ank_5 | coord: 34..81
e-value: 2.9E-10
score: 40.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1090..1154 |
| None | No IPR available | CDD | cd00204 | ANK | coord: 2..130
e-value: 3.98923E-23
score: 96.2986 |
| None | No IPR available | CDD | cd00204 | ANK | coord: 37..198
e-value: 1.52169E-30
score: 117.485 |
| None | No IPR available | CDD | cd00204 | ANK | coord: 216..343
e-value: 2.15972E-26
score: 105.543 |
| None | No IPR available | CDD | cd00204 | ANK | coord: 453..602
e-value: 1.17014E-18
score: 83.2018 |
| None | No IPR available | CDD | cd00204 | ANK | coord: 283..445
e-value: 6.8074E-32
score: 121.337 |
| None | No IPR available | CDD | cd00204 | ANK | coord: 386..512
e-value: 6.09283E-37
score: 135.974 |
| None | No IPR available | SUPERFAMILY | 81324 | Voltage-gated potassium channels | coord: 718..964 |
| IPR002110 | Ankyrin repeat | PRINTS | PR01415 | ANKYRIN | coord: 178..193
score: 42.98
coord: 474..488
score: 40.44 |
| IPR002110 | Ankyrin repeat | SMART | SM00248 | ANK_2a | coord: 110..140
e-value: 0.099
score: 21.8
coord: 220..249
e-value: 0.51
score: 19.4
coord: 525..553
e-value: 0.017
score: 24.3
coord: 144..173
e-value: 0.0078
score: 25.4
coord: 177..206
e-value: 0.11
score: 21.6
coord: 424..454
e-value: 0.0024
score: 27.1
coord: 391..420
e-value: 2.5E-5
score: 33.7
coord: 41..70
e-value: 1.8E-7
score: 40.8
coord: 74..106
e-value: 210.0
score: 10.1
coord: 253..283
e-value: 20.0
score: 14.1
coord: 321..351
e-value: 350.0
score: 8.4
coord: 557..586
e-value: 260.0
score: 9.4
coord: 288..317
e-value: 4.8E-7
score: 39.4
coord: 355..384
e-value: 0.65
score: 19.0
coord: 458..487
e-value: 8.5E-9
score: 45.2
coord: 491..520
e-value: 450.0
score: 7.6 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 424..456
score: 9.11 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 177..198
score: 9.644 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 391..423
score: 12.369 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 144..176
score: 9.137 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 458..490
score: 16.215 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 491..516
score: 8.549 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 288..320
score: 14.719 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 525..547
score: 8.923 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 41..73
score: 15.28 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 220..252
score: 9.885 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 110..132
score: 8.63 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 146..200
e-value: 2.8E-14
score: 52.5 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 102..145
e-value: 1.1E-15
score: 56.9 |
| IPR020683 | Ankyrin repeat-containing domain | PFAM | PF12796 | Ank_2 | coord: 115..198
e-value: 1.1E-12
score: 48.2
coord: 496..578
e-value: 9.8E-11
score: 42.0
coord: 329..421
e-value: 1.4E-13
score: 51.1
coord: 225..319
e-value: 2.7E-16
score: 59.8
coord: 424..489
e-value: 8.4E-14
score: 51.8 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 202..366
e-value: 3.8E-40
score: 137.2 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 1..101
e-value: 3.2E-22
score: 78.1 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 367..433
e-value: 5.7E-24
score: 84.1 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 434..594
e-value: 2.9E-40
score: 137.3 |
| IPR020683 | Ankyrin repeat-containing domain | PROSITE | PS50297 | ANK_REP_REGION | coord: 1..547
score: 118.958 |
| IPR020683 | Ankyrin repeat-containing domain | SUPERFAMILY | 48403 | Ankyrin repeat | coord: 2..248 |
| IPR020683 | Ankyrin repeat-containing domain | SUPERFAMILY | 48403 | Ankyrin repeat | coord: 225..580 |
| IPR005821 | Ion transport domain | PFAM | PF00520 | Ion_trans | coord: 724..973
e-value: 2.6E-12
score: 46.4 |
Blast
BLAST of TCONS_00008721-protein vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 319.316 bits (817), Expect = 8.159e-92 Identity = 274/1033 (26.52%), Postives = 478/1033 (46.27%), Query Frame = 0
Query: 2 MHQASRDGDLEKLKQELEELYVDYPEEDARKQALCHRDHWGLTPLHYAVKYNHLEVVRMLVEKGADANVRGKKGARPIHYFTCFNRGSDASILQYLISCEADINALDDNNFSPLHFACSKGNFKVVQILTQCDGIKIEAEDRLRNTPLHCACSYGDIVVVDTILDCAANLLAENEAGFTPLHVACSQGHEELLNHLLTIVENRFGFAKLASVLEMKNKEGQGLLHLAVLASHYNITKNLLERGCDVESPMEGNDTVLHIAAVSCNTEMIELILRFMSFKV--LDKPNDKGRTALHYAARFGKHKIVSLFLKRGANINCRDNNQASPIIMASGKSGNAKTVQMMMRQEADILMTDREDCTALHVATKE----NNL--EAVQMLLTSEQRKEMINMKNKDSNTCLHVACAHGYEDIANLLMEKGADVKSRNYNNETPLHLAAYYGQNDVVDNII-DI-DNSTINDNDSNGNSPLHMAAESGNFDVVKYLLKSGA-SINDKNALGLTPLEIAASNGQTDAAKALIWGGAASGSRCESTGLNALHYASIGGHSDMIEYLLEYCDIEETDLTGRNALDHAIDNLNKDAVYSILSHRDWKLALRNKTIDEDKKLTTPLRKLIKRMPDVAQFVFDRC-ISSPEDLPVDNPDYELVLNYEFIDDVYNDWPCDIVRYEAEEGQKKGDVFTRKKIQRIMEQKETHTFSYMVAYDREDLVSHPLIQASLNKKWQKFAAYLYYFKLLLYVCFLTSLTGYILVTAPLREPYRSKDCTIVQENATWEMIVFV--HYGKFAVIILALLHLIFEIVQMIGQLGD-----YLQLDNLLEWIIYILAIANVIDDFIVLPFLRNGLICGMYQKSFGSLALFLSWLNFVLFMRKVPVFGIYIVMFLYVFKTFFKFFVVFIFFIATFAFAFFILLRDGQSPAFKNPWTSLVKVGVMMTGEMGFDELF---FYGGGKVDPIL-WIIFIIFVLVLNIILMNLLVGLAVDDIAGVQKQAEMTKSTMQIDICLQAEITLPKMFRTRFVVKSQKLRPNK 1011
+H A+ +G +E +++ D+ + L D +G TPLH AV+ N +E V+ L+ +G A+ N + N +PLH A N +V+++L + I + E NT + AC+ + + +L A N+ G P+H A G +E + +L E G+++ + M N + L HLAV + K L+ G ++ +G T +H AA TE+++L++ S V ++ + T LH A+ F H++ + GA+IN D+ SP+I+A+ S + V +++ + A + + D LH+ ++ NL E +QM +Q KE++ ++ D T LH AC G N L+ + S++ + ++PLH AA YG+ + ++ DI D +N+ D +G +PLH+AA++G+ VV+ LLK GA ++D N G T L A+ G T K ++ R + G ALH+A+ GH+ + LL + + + L A+ N K+ V +I+ + W L+ + + P+ ++I+ +P+ + + D C + S ED DY + N++++ C + FT+K + + + + MV +R +L++HP+ + L KW + + L Y L +T ++ ++ I+ E + I+ Y +IL L IF + GQ+ ++ + N+LEWIIY I V+ F+ +P Q G++A++ W+NF+L++++ GI+IVM + KT + VVFIF + F +F+ILL + Q P F +P S+++ MM G++ + E F + P+L + + F + + I+LMNLL+GLAV DIA VQK A + + MQ+++ E LP F + KS + PNK
Sbjct: 67 LHYAAAEGQIELMEK---------ITRDSSLEVLHEMDDYGNTPLHCAVEKNQIESVKFLLSRG------------------------------------ANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEEH-GYSRQLHINFMNNGKATPL-HLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGADINKIDSEGRSPLILATA-SASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYGLKNLRPEFMQM----QQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGALFLSDHN--GWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVLNKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGN-KCPITEMIEYLPECMKVLLDFCMLHSTEDKSCR--DYYIEYNFKYLQ-------CPLE-------------FTKKTPTQDVIYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYGFRAHMMNLGSYCLGLIPMT---ILVVNIKPGMAFNSTGIINETSDHSEILDTTNSYLIKTCMILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFVEIP--------AHLQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSFYILL-NLQDP-FSSPLLSIIQTFSMMLGDINYRESFLEPYLRNELAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKSTIVYPNK 1009
The following BLAST results are available for this feature:
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