|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008721 ID=TCONS_00008721|Name=TCONS_00008721|organism=Clytia hemisphaerica|type=transcript|length=4821bpRun BLAST on NCBI protein sequence of TCONS_00008721-protein >TCONS_00008721-protein ID=TCONS_00008721-protein|Name=TCONS_00008721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1154bp MMHQASRDGDLEKLKQELEELYVDYPEEDARKQALCHRDHWGLTPLHYAVRun BLAST on NCBI transcript from alignment at sc0000087:372831..395640+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008721 ID=TCONS_00008721|Name=TCONS_00008721|organism=Clytia hemisphaerica|type=transcript|length=22810bp|location=Sequence derived from alignment at sc0000087:372831..395640+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000087:372831..395640+ >TCONS_00008721 ID=TCONS_00008721|Name=TCONS_00008721|organism=Clytia hemisphaerica|type=CDS|length=65835bp|location=Sequence derived from alignment at sc0000087:372831..395640+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008721 vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 233.802 bits (595), Expect = 2.325e-62 Identity = 254/1006 (25.25%), Postives = 449/1006 (44.63%), Query Frame = 2
Query: 215 DARKQALCHRDHWGLTPLHYAVKYNHLEVVRMLVEKGADANVRGKKGARPIHYFTCFNRGSDASILQYLISCEADINALDDNNFSPLHFACSKGNFKVVQILTQCDGIKIEAEDRLRNTPLHCACSYGDIVVVDTILDCAANLLAENEAGFTPLHVACSQGHEELLNHLLTIVENRFGFAKLASVLEMKNKEGQGLLHLAVLASHYNITKNLLERGCDVESPMEGNDTVLHIAAVSCNTEMIELILRFM--SFKVLDKPNDKGRTALHYAARFGKHKIVSLFLKRGANINCRDNNQASPIIMASGKSGNAKTVQMMMRQEADILMTDREDCTALHVATKE----NNL--EAVQMLLTSEQRKEMINMKNKDSNTCLHVACAHGYEDIANLLMEKGADVKSRNYNNETPLHLAAYYGQXXXXXXXXXXXXXXXXXXX--XXGNSPLHMAAESGNFDVVKYLLKSGA-SINDKNALGLTPLEIAASNGQTDAAKALIWGGAASGSRCESTGLNALHYASIGGHSDMIEYLLEYCDIEETDLTGRNALDHAIDNLNKDAVYSILSHRDWKLALRNKTIDEDKKLTTPLRKLIKRMPDVAQFVFDRC-ISSPEDLPVDNPDYELVLNYEFIDDVYNDWPCDIVRYEAEEGQKKGDVFTRKKIQRIMEQKETHTFSYMVAYDREDLVSHPLIQASLNKKWQXXXXXXXXXXXXXXVCFLTSLTGYILVTAPLREPYRSKDCTIVQENATWEMIVFV--HYGKFAVIILALLHLIFEIVQMIGQLGD-----YLQLDNLLEWIIYILAIANVIDDFIVLPFLRNGLICGMYQKSFGSLALFLSWLNFVLFMRKVPVFGIYIVMFLYXXXXXXXXXXXXXXXXXXXXXXXXXLLRDGQSPAFKNPWTSLVKVGVMMTGEMGFDELF---FYGGGKVDPXXXXXXXXXXXXXXXXXXXXXXX-XAVDDIAGVQKQAEMTKSTMQIDICLQAEITLPKMFRTRFVVKSQKLRPNK 3163
D+ + L D +G TPLH AV+ N +E V+ L+ +G A+ N + N +PLH A N +V+++L + I + E NT + AC+ + + +L A N+ G P+H A G +E + +L E G+++ + M N + LHLAV + K L+ G ++ +G T +H AA TE+++L++ S +++ + T LH A+ F H++ + GA+IN D+ SP+I+A+ S + V +++ + A + + D LH+ ++ NL E +QM +Q KE++ ++ D T LH AC G N L+ + S++ + ++PLH AA YG+ + ++ + T N+ +G +PLH+AA++G+ VV+ LLK GA ++D N G T L A+ G T K ++ R + G ALH+A+ GH+ + LL + + + L A+ N K+ V +I+ + W L+ + + P+ ++I+ +P+ + + D C + S ED DY + N++++ C + FT+K + + + + MV +R +L++HP+ + L KW + + L Y L +T ++ ++ I+ E + I+ Y +IL L IF + GQ+ ++ + N+LEWIIY I V+ F+ +P Q G++A++ W+NF+L++++ GI+IVM L V V F+ F +L + Q P F +P S+++ MM G++ + E F + P+L ++ + I++ L+ LAV DIA VQK A + + MQ+++ E LP F + KS + PNK
Sbjct: 85 DSSLEVLHEMDDYGNTPLHCAVEKNQIESVKFLLSRG------------------------------------ANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEEH-GYSRQLHINFMNNGKATP-LHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGADINKIDSEGRSPLILATA-SASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYGLKNLRPEFMQM----QQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGALFLSDHN--GWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVLNKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGN-KCPITEMIEYLPECMKVLLDFCMLHSTEDKSCR--DYYIEYNFKYLQ-------CPL-------------EFTKKTPTQDVIYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYGFRAHMMNLGSYCLGLIPMT---ILVVNIKPGMAFNSTGIINETSDHSEILDTTNSYLIKTCMILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFVEIP--------AHLQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVM-LEVILKTLLRSTVVFIFLLLAFGLSFYILLNLQDP-FSSPLLSIIQTFSMMLGDINYRESFLEPYLRNELAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKSTIVYPNK 1009 The following BLAST results are available for this feature:
BLAST of TCONS_00008721 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.