TCONS_00006925-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006925-protein
Unique NameTCONS_00006925-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006925-protein ID=TCONS_00006925-protein|Name=TCONS_00006925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
MAQQQLRAPIPVLIISYETFRLHAEVMHRSPVGLVICDEGHRLKNLENQT
YMALNQLQTKKRVLLSGTPIQNDLLEYFSLVHFVNGGILGTVSDFKRKFE
NPILQSRDADASDAQQKKGEEKLAELLSIVNKCIIRRTSALLSKYLPVKT
EQVVLCKMTTLQQKMYKAFINSKLVNQSLKENKLSASSLAFINQIKKLCN
HPELIYDQQKLCEDGLQKILDIFPKDFSLKHFRPEMSGKMQVLDFILAMV
KATTDDKVVLVSNYTQTIDLFEKLARLRRYQYVRLDGSMSIKKRMKVVER
FNDPASGDYLFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVW
RDGQKKQVFIYRLLSTGSIEEKIIQRQAHKKALSSCVVDENQDVERHFTM
GDLKDLFKYDDNTLCDTHDRFKCRRCINNIETRSPPDGSDCTNDLSQWHH
CATPKGLVDTVLKRAWDCGVSFVXQWHHCATPKGLVDTVLKRAWDCGVSF
VFHQKSHDQISTV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003874XLOC_003874Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006925TCONS_00006925Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR000330SNF2_N
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 269..353
e-value: 7.5E-20
score: 82.0
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 244..352
e-value: 2.5E-16
score: 59.9
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 241..395
score: 16.041
NoneNo IPR availableGENE3D3.40.50.10810coord: 2..136
e-value: 7.5E-30
score: 103.2
NoneNo IPR availableGENE3D3.40.50.300coord: 229..430
e-value: 1.8E-33
score: 115.1
NoneNo IPR availableCDDcd00079HELICccoord: 231..361
e-value: 5.49553E-24
score: 96.1528
NoneNo IPR availableCDDcd00046DEXDccoord: 4..69
e-value: 1.92163E-5
score: 42.3244
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 4..204
e-value: 5.0E-38
score: 130.6
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 1..87
score: 14.923
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 8..137
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 141..475

Blast
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BLAST of TCONS_00006925-protein vs. Swiss-Prot (Human)
Match: RAD54 (DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2)

HSP 1 Score: 662.144 bits (1707), Expect = 0.000e+0
Identity = 324/509 (63.65%), Postives = 387/509 (76.03%), Query Frame = 0 
Query:    1 MAQQQLRAPIPVLIISYETFRLHAEVMHRSPVGLVICDEGHRLKNLENQTYMALNQLQTKKRVLLSGTPIQNDLLEYFSLVHFVNGGILGTVSDFKRKFENPILQSRDADASDAQQKKGEEKLAELLSIVNKCIIRRTSALLSKYLPVKTEQVVLCKMTTLQQKMYKAFINSKLVNQSLKENKLSASSLAFINQIKKLCNHPELIYDQQKLCEDGLQKILDIFPKDFSLKHFRPEMSGKMQVLDFILAMVKATTDDKVVLVSNYTQTIDLFEKLARLRRYQYVRLDGSMSIKKRMKVVERFNDPASGDYLFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKQVFIYRLLSTGSIEEKIIQRQAHKKALSSCVVDENQDVERHFTMGDLKDLFKYDDNTLCDTHDRFKCRRCINNIETRSPPDGSDCTNDLSQWHHCATPKGLVDTVLKRAWDCGVSFVXQWHHCATPKGLVDTVLKRAWDCGVSFVFHQKSHDQ 509
            M Q+  R   P+LIISYETFRLH  V+ +  VGLVICDEGHRLKN ENQTY AL+ L T +RVL+SGTPIQNDLLEYFSLVHFVN GILGT  +FK+ FE PIL+ RDA AS+A ++ GEE+L EL SIVN+C+IRRTS +LSKYLPVK EQVV C++T LQ ++YK F+      + L E K+S SSL+ I  +KKLCNHP LIYD+    EDG    LD+FP  +S K   P++SGKM VLD+ILA+ ++ + DKVVLVSNYTQT+DLFEKL R RRY YVRLDG+MSIKKR KVVERFN P+S D++FMLSSKAGGCGLNLIGANRLVMFDPDWNPAND+QAMARVWRDGQKK  +IYRLLS G+IEEKI QRQ+HKKALSSCVVDE QDVERHF++G+LK+LF  D+ +L DTHDR  CRRC+N+ + R PPDGSDCT+DL+ W+HC    GL D VL+ AWD                         A    ++FVFHQ+SH++
Sbjct:  259 MNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVLQAAWD-------------------------AASTAITFVFHQRSHEE 742
The following BLAST results are available for this feature:
BLAST of TCONS_00006925-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAD540.000e+063.65DNA repair and recombination protein RAD54-like OS... [more]
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