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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006925 ID=TCONS_00006925|Name=TCONS_00006925|organism=Clytia hemisphaerica|type=transcript|length=2338bpRun BLAST on NCBI protein sequence of TCONS_00006925-protein >TCONS_00006925-protein ID=TCONS_00006925-protein|Name=TCONS_00006925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp MAQQQLRAPIPVLIISYETFRLHAEVMHRSPVGLVICDEGHRLKNLENQTRun BLAST on NCBI transcript from alignment at sc0000072:255930..301011- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006925 ID=TCONS_00006925|Name=TCONS_00006925|organism=Clytia hemisphaerica|type=transcript|length=45082bp|location=Sequence derived from alignment at sc0000072:255930..301011- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000072:255930..301011- >TCONS_00006925 ID=TCONS_00006925|Name=TCONS_00006925|organism=Clytia hemisphaerica|type=CDS|length=21588bp|location=Sequence derived from alignment at sc0000072:255930..301011- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006925 vs. Swiss-Prot (Human)
Match: RAD54 (DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2) HSP 1 Score: 735.717 bits (1898), Expect = 0.000e+0 Identity = 358/560 (63.93%), Postives = 429/560 (76.61%), Query Frame = 1
Query: 193 KPQINKAIIVTPASLVKNWYKELDKWLKGRVCALAIDSGSKKEIDTKLVGFMAQQQLRAPIPVLIISYETFRLHAEVMHRSPVGLVICDEGHRLKNLENQTYMALNQLQTKKRVLLSGTPIQNDLLEYFSLVHFVNGGILGTVSDFKRKFENPILQSRDADASDAQQKKGEEKLAELLSIVNKCIIRRTSALLSKYLPVKTEQVVLCKMTTLQQKMYKAFINSKLVNQSLKENKLSASSLAFINQIKKLCNHPELIYDQQKLCEDGLQKILDIFPKDFSLKHFRPEMSGKMQVLDFILAMVKATTDDKVVLVSNYTQTIDLFEKLARLRRYQYVRLDGSMSIKKRMKVVERFNDPASGDYLFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKQVFIYRLLSTGSIEEKIIQRQAHKKALSSCVVDENQDVERHFTMGDLKDLFKYDDNTLCDTHDRFKCRRCINNIETRSPPDGSDCTNDLSQWHHCATPKGLVDTVLKRAWDCGVSFVXQWHHCATPKGLVDTVLKRAWDCGVSFVFHQKSHDQ 1872
KP+I+KA++V+P+SLVKNWY E+ KWL GR+ LAID GSK EID KL GFM Q+ R P+LIISYETFRLH V+ + VGLVICDEGHRLKN ENQTY AL+ L T +RVL+SGTPIQNDLLEYFSLVHFVN GILGT +FK+ FE PIL+ RDA AS+A ++ GEE+L EL SIVN+C+IRRTS +LSKYLPVK EQVV C++T LQ ++YK F+ + L E K+S SSL+ I +KKLCNHP LIYD+ EDG LD+FP +S K P++SGKM VLD+ILA+ ++ + DKVVLVSNYTQT+DLFEKL R RRY YVRLDG+MSIKKR KVVERFN P+S D++FMLSSKAGGCGLNLIGANRLVMFDPDWNPAND+QAMARVWRDGQKK +IYRLLS G+IEEKI QRQ+HKKALSSCVVDE QDVERHF++G+LK+LF D+ +L DTHDR CRRC+N+ + R PPDGSDCT+DL+ W+HC GL D VL+ AWD A ++FVFHQ+SH++
Sbjct: 208 KPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKWGLRDEVLQAAWD-------------------------AASTAITFVFHQRSHEE 742 The following BLAST results are available for this feature:
BLAST of TCONS_00006925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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