TCONS_00006278-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006278-protein
Unique NameTCONS_00006278-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length99

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006278-protein ID=TCONS_00006278-protein|Name=TCONS_00006278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MAEALAITLEFSGGAELLFDKVKKHEVALQGDDWTIGKLLFWIKDNLLKE
RPELFIQGKTVRPGILVLVNDADWELMGELEYKLEKNDCITFISTLHGG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003586XLOC_003586Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006278TCONS_00006278Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015221Urm1
IPR012675Beta-grasp_dom
IPR016155Mopterin_synth/thiamin_S_b
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0034227tRNA thio-modification
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034227 tRNA thio-modification
cellular_component GO:0005737 cytoplasm
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015221Ubiquitin-related modifier 1PIRSFPIRSF037379Urm1coord: 3..99
e-value: 8.2E-40
score: 133.1
IPR015221Ubiquitin-related modifier 1PFAMPF09138Urm1coord: 7..99
e-value: 7.4E-37
score: 125.5
IPR015221Ubiquitin-related modifier 1HAMAPMF_03048Urm1coord: 5..99
score: 34.187
IPR015221Ubiquitin-related modifier 1CDDcd01764Urm1coord: 7..99
e-value: 2.34246E-41
score: 132.41
IPR012675Beta-grasp domainGENE3D3.10.20.30coord: 2..99
e-value: 3.3E-37
score: 126.1
IPR016155Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-graspSUPERFAMILY54285MoaD/ThiScoord: 3..99

Blast
[Close]
BLAST of TCONS_00006278-protein vs. Swiss-Prot (Human)
Match: URM1 (Ubiquitin-related modifier 1 OS=Homo sapiens GN=URM1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.966e-45
Identity = 68/101 (67.33%), Postives = 80/101 (79.21%), Query Frame = 0 
Query:    1 MAEALAITLEFSGGAELLFDKVKKHEVALQGDD--WTIGKLLFWIKDNLLKERPELFIQGKTVRPGILVLVNDADWELMGELEYKLEKNDCITFISTLHGG 99
            MA  L++ +EF GGAELLFD +KKH V L G +  W I  LL WIK NLLKERPELFIQG +VRPGILVL+NDADWEL+GEL+Y+L+  D + FISTLHGG
Sbjct:    1 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG 101
The following BLAST results are available for this feature:
BLAST of TCONS_00006278-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
URM13.966e-4567.33Ubiquitin-related modifier 1 OS=Homo sapiens GN=UR... [more]
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