TCONS_00006278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006278
Unique NameTCONS_00006278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1138

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006278 ID=TCONS_00006278|Name=TCONS_00006278|organism=Clytia hemisphaerica|type=transcript|length=1138bp
CCCGACTGTAATCATGTATTGGCCAGATTTTGAGGCTAGATACATGGTGC
CGAGACCCCAAGTCTGGAAAATTACCGTACTTACCtgtaacaatccaaaa
gttttttaataatcaaatcgatctgattggtttaaaactaaaaattatgA
TGTATTCGTAATTGACCTAAATGAACCAATCAGTTCTCAGAAAAAGAGTT
TGACTGTTAAGGGCAATTTTGGATTGGTAAGTACTCAAAACTTCAAAGAT
GGCAGAGGCGCTGGCGATCACGTTAGAATTCAgtGGAGGTGCAGAGCTTT
TGTTTGATAAAGTGAAGAAACACGAGGTCGCTTTACAAGGGGATGATTGG
ACGATTGGGAAACTTCTCTTTTGGATCAAGGACAATTTACTGAAAGAAAG
GCCTGAACTATTTATTCAAGGGAAAACAGTtcgaCCTGGAAttttggttt
tggtgaatgATGCAGATTGGGAGCTGATGGGAGAGTTGGAATATAAGCTG
GAAAAGAACGATTGTATAACCTTCATATCGACTTTGCATGGTggatgaaa
agaaaagaagtgcCAAAAGGGCAAAAATTACAACATCAACGCCATATGAT
CGAAATCAGGGACTGTTCATGTGAATGAATGATCATGCCAGGATCTGATC
TGTAATTATCCTTGGAAAATTTGATAgaatattttatataaaaagctgca
ttgggctcttccagaaagttTTCGTACATGGGAGATGGGTGGAGGATATG
TTGGATATATTGTTcgaggggtagtgaaaaatctaaaaaatcggCCTTGA
TTTTGGGGCATTACTGCTCTGTTTAGGAGTAAAATGTCCGGGGCGTAAag
ttccaaaaaatgttatatcctccacccccatattcaatttttttcggaag
aGCCCTATCATTTATTAAAAGCTTTTGTATCATCCAATGTAAGAAATGTT
TATATTAGGCACATTGAAAACATATTTTACATCTGCTAATTATAAATGTT
TATGCCTTGAATTTATGTTTTTACCCAAACTTTTTGGTCTTGAATTATGG
AGAAATCCCAAACAAAGGTCTCGAAACTTTTGATTTCCATTAGAGGATTT
CAATGTAAGTATTTATCACTTAAAGATTGAAATGTGCA
Run BLAST on NCBI

protein sequence of TCONS_00006278-protein

>TCONS_00006278-protein ID=TCONS_00006278-protein|Name=TCONS_00006278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MAEALAITLEFSGGAELLFDKVKKHEVALQGDDWTIGKLLFWIKDNLLKE
RPELFIQGKTVRPGILVLVNDADWELMGELEYKLEKNDCITFISTLHGG
Run BLAST on NCBI

transcript from alignment at sc0000066:728763..735623+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006278 ID=TCONS_00006278|Name=TCONS_00006278|organism=Clytia hemisphaerica|type=transcript|length=6861bp|location=Sequence derived from alignment at sc0000066:728763..735623+ (Clytia hemisphaerica)
CCCGACTGTAATCATGTATTGGCCAGATTTTGAGGCTAGATACATGGTGC
CGAGACCCCAAGTCTGGAAAATTACCGTACTTACCtgtaacaatccaaaa
gttttttaataatcaaatcgatctgattggtttaaaactaaaaattatgA
TGTATTCGTAATTGACCTAAATGAACCAATCAGTTCTCAGAAAAAGAGTT
TGACTGTTAAGGGCAATTTTGGATTGGTAAGTACTCAAAACTTCAAAGAT
GGCAGAGGCGCTGGCGATCACGTTAGAATTCAggtataaaaacaaaatat
atgtTCCTTTTATTTCTTGTCCTACTATCATCATCAAAGAGGCAGAATGT
TTCGATCTACAGAAATTCACCAGCATCTTTTCAAGagtttcaaaagcttt
ttctgcGTACATCATCGTTGAGAATGATTGAGAGGGtttgaaagttttga
gaaaaatgcctCCTTAGAAATGTTGCAGCTCCTCCCAGTCTGGAAATTGC
GACGTGTGCGCCGGATATGTCCGGCGTAAATTTGAGATTTGAGATCTGTT
GCCTTTGGCTTTTCCAAGTTAAGTTGGCGCAGCTCCGGCGTAACATTTCC
CTCCTTTCCAGACTGGAGCTCCTCTCGACCCACACGGTCTAACCGTGTAA
ATCAGTGCTTTTTACATATGGAAATACATTTCTTGATGAATAAGATCGTT
TTGTGTCTCTACATTCATTACAATTAAATTGACGTTTTAGTTTTTTGGAC
ATACACACACATAGACCAAATTTTAATTTAGGTTGTTTCCTTTGAACGAT
TCGGGAACAGTTTccgaaaaatctcttttcttcaggctacaatatcaaat
caaagaggatAAAACCTATTTCTGGCACACCGGTATCAAAACAGTGGAAT
TCTGTTACTGTAATCTAAAACAATCATtgaattccaatactttaatgcaa
aattaagtaaaattcatggaattccgatactttctctttaaagatTGCCT
GGAATTCTGTGCCAAAATTTATTATTAAAAATGATGTCGTCCATTAgaga
gtaattttttttttctggaatggcccatttgaAATTGCCAGACGGTCTAA
ATCGATAAAATTTATCATCGATTATCGATATTCACTCATTTTAACCTCAA
TTAGCTATTGATCCAATCGATGCAACCTCAATTAGCTATTGATCCAATCG
ATGCGATTGATGCGATCAATTATCAATCTATACCATCTGTGCATTGATAC
TATAAAAGGTAATCGATATTAATCTATAGTTCATTGATAACAATTGATAG
CTCGTCGATAGATAATCGTTGAATAATCGTTAATAGTTGATACTGCAAGG
TAATCGATAATAATCAATATCAGTTAAGGGGGTTTCAGTTATAGTCCGTT
ACAGCCCCCCCCATGTGGACAACATGGATTTTCTGTaataatcaaatttt
caaaaacttcaggatttccataacattcaagaaaaaattccaaaaaaccc
TGCCGTCCAGACTGATAAAGCTATCGATTATAGATTTTATAAATATATCA
TTTACAAGAGGGGcccaaaatttgtgtaggagagcataCTTTTGTAAAAC
TGTAATTATCTTTTATtctatgaatagataattagtgtcataaaaatctg
ttcTCCTTTATAAATTTTATGCCCCTCTTGTCTTCGCTACTGGTATCATC
AAAAGACCTCAAAAGCTTATTGATATTTTAGGTCTCACTTTTGCTCACTT
ATGAAGAATGTATTGGTCTGTATGTTATTGGACGATAGATTATGATTTTA
CCGTGAGGGCTTAGTATTACATTTGCATGTTTCATGATCCTGATTCCTTT
CTTTGGTCATGGTTTATCATAGAcagtgcgtctcaaaccgcgatattttg
agagcacggaagcgcgtcaaaacaccagcttttttagacttttgtcttgt
ttacccaaacgctgcaatcctgcgtaggctttgggctcaagactagaacc
cccaatgtttttttcattattttgagcaaaatatctaaaaatgaggaaaa
tctAAAGACATCACTTCCTCACTTTGCCCGGATCTctcagaaaatggctc
ttaataaGGGAGATATGATTGGGAACCCCCTGAAGGTGATCAGTTTTAAA
ATATGTGGTACCATTTGGCCTCTGAAAAAATACTAAAGTTCAACCCATGG
TTATGAACACATTGTATTAccattgaatttttttgttttatttagtGGAG
GTGCAGAGCTTTTGTTTGATAAAGTGAAGAAACACGAGGTCGCTTTACAA
GGGGATGATTGTAAGTTTGAGATTTATTTCAGTTGAGCCTGGTCGAGCTA
GAATCTAAGAATggctgtctgtgtgtctgtctgtgtgtctgtatGTATAT
ATATACTGTATGTCTGTACGTCActtcaaaactttggggcaggctggaga
cttcaatagtacgatttgattgaaattttgcacacttgttccttgggtga
atatcccTGGGAttcatcttttgaaaattttgattttttgggtccgggga
caagtttttcgccaaaacgggGCTAAAGCTTTGGGGCAGACTGGAGACTT
AaaacatggtcagatttggctgaaattttgcacacttgctcCTTGGCTGA
ATATCAGGTGTTTTTTacagttttgagaattttggtttttcGGGCTTGGG
GAcaagtttttcaccaaaacgtcAAAAGTTATCTTATAACAAGAATTTTC
TGTTGATGTTTATAATTGGGCCTACAAGTCAtttaaaagatactgaagtt
gagccagtgcagTTAGCACTTTCGACAGTGAGAATGTCtttttgacaatg
aaaataaatgtCATTAGAAATTAGTTTTAAAATCTTGTCATACCAAGGAA
AATAtttataatttgtttttctatCTTTAGGGACGATTGGGAAACTTCTC
TTTTGGATCAAGGACAATTTACTGAAAGAAAGGCCTGAACTATTTATTCA
AGGGAAAACAGTGTTAGTAAAACTATGGATGTCTTTGGGTTCATTTGGCT
CATTACTTAGAAGGAGATATACCTTGacatatttttaaaagtgaagAATA
GTATGGGAAAGATGGCGTTTCTAAATTGCCATGCTTCCATGTCAGATCTG
ACTAAAACTCACCACAACCAGTGTTCCATTTCATCCATATTCCTTATGAA
ATTTGAAATCTGAATAGGTATACAGAGGTAATGGATAGTTTTtatacttt
tcattttttgttttctctttttattttttttcagtcgaCCTGGAAttttg
gttttggtgaatgATGCAGATTGGGAGCTGATGGTTAGTCCTCGGTCTTG
TTGTTCTTATTCTTGTTGTTTTTAAGtaccgggtggtccaaaaaacTTTG
AATGTTTGGCAACGCCTTTGAGCAGAATAGATCAAAATATAAACTTGAAA
TTAATGTCATAGAAAAAGGAaagtttaacttaaattttgagctactactt
ttgaaatttggttcagtatttttgagtaatcggttttaaaagtgaaattt
cacttttcaaaatgaCCGAAAATGGTCGAAATGGGTGATTGAATTAACAA
CGAGAAAAAGACTGAACTAAAGACGTCTTAATAATGATTGTACTGGCaca
attttcttttctattttctgaagAAACTATTCAtaaggcaaaaaaacaaa
aacaaagaacttATTTGTTCACccttttaaacgttttttgcattttttga
cattaagtattaataacttttgaaccaattgTCCAAATGTATAAACTAAT
TGATCACAATTTAAGTTAGACCCTCCCCAATTTCAATAAAGCAAGGTGAA
CCTAACCGACCACTTTCTTAAAATGTCAcaaacatccaaagttttttatt
tcaaccaCCCTGTATACAGTATCTAACAGAAAcacatgatttatttttta
taaacgaGTGATACTTTATAGTGtaaactagacggttcccgtcgtcgcaa
acgccggttaacagttttgcttgcacatcaaaagcctttaaaatactata
atgtgggttaatgcCTGACATCGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttccagc
cgcggcgttcaaattttagaaaccttaacatatgttactgggctagcgtt
acagacatttttcataaactcatttagtatagtaagatattGTTTTAAGA
GGCCCCCCCAGGCGACACTCAATTCACGTATTCACGCAAAATTTTTTGCC
AATTCACGTATTCACGCGCGAAAAAAACCATtttcacgttcacgcgctga
ttttgcttttaattcttttgttaaacgattgtgaccttattgggctaaat
ttgacctttttatggccaacataaagttttctgcagctttttgaccttat
tctcgacagTGTCGACCTTTTAAGACCTCTTACAATTATTGGAGCTTTCA
TAGGGCAATGTTTAAAGTTTGTCTATCACGTCAAAGTTACAAAAAAACTA
CCTCTCTGGCGTACGGTGGTATAAACCCTGcctgaatttgctttttaagg
gAGGTAAGTGCAAAGTTAAGCCTTAGCTTTAAGGTTTCCCCccgaatttt
cttcgtcgcaggccctaaatatatattttttgagaataaatttaaatcgA
GGCTTGGCCTAAATTCATGGTCTGGAAAGTCGCGAGCTCCAAAGAGGTGG
TACAATCAGAGGACGCAAATTCCAAAGTTTGACCCCCTGTCTCATTGAAG
AAAAGCTGTGGAAAggaaaaagcgagcgaagcgagcacgaaAATTTTTTG
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCtaatatgccttgtttg
gtcaaacaattcattcagaatctttgattattttcaacactgaccattta
ctggtacaaatctggtacggcgagtgACGTACCCGCCTTACACGGTGCGG
TGTCACaagagtttttttctgaatgttCGATGATGCAATCATATGAAATT
TTTTAGAACTATCTACCTACTTTTGTAAATTATGGAAGAATCAAATACCC
TTCACTGTCTCCAAGTTCatgcggtatcattttgtgtagtgcatttagta
acaatataagcaattacagaaagacgaccatcattagcgccgacgaagaa
aattttctcaattagACTTATTTGTTTTGGCTCAAAACACTCTCGCTGGA
TGcaatatttgcatcacaaaatgcgcccttagaaaaataagaaaaaataa
aaatatttgtttctgtttccatttttgattattttgaataactttacaaT
GGCAATAGGTCAATATGATATCAAGgattatgcgagcgaagcgagcaaga
aaattttacatatttaggtttattcagttttagacaataatttgcttttc
acgttTCACGCTCGaaatctcgattcacgaattcacgctgCTAAAATCTT
ACTTTCACGTTCACGCGGatatctcaattcacgtattcacgcgttgaaaa
agtccaattcacgtattcacgacagaaaaaagggtcattcacgcgtcacg
ccagcccctgggggagccccttTTAAATAAATATGTTTGCAATATTCCCA
GCAAAAGTGGATAAAAATCTCGCTTTCAAATGTTTAATTATCATTGTTTT
AGGGAGAGTTGGAATATAAGCTGGAAAAGAACGATTGTATAACCTTCATA
TCGACTTTGCATGGTggatgaaaagaaaagaagtgcCAAAAGGGCAAAAA
TTACAACATCAACGCCATATGATCGAAATCAGGGACTGTTCATGTGAATG
AATGATCATGCCAGGATCTGATCTGTAATTATCCTTGGAAAATTTGATAg
aatattttatataaaaagctgcattgggctcttccagaaagttTTCGTAC
ATGGGAGATGGGTGGAGGATATGTTGGATATATTGTTcgaggggtagtga
aaaatctaaaaaatcggCCTTGATTTTGGGGCATTACTGCTCTGTTTAGG
AGTAAAATGTCCGGGGCGTAAagttccaaaaaatgttatatcctccaccc
ccatattcaatttttttcggaagaGCCCTATCATTTATTAAAAGCTTTTG
TATCATCCAATGTAAGAAATGTTTATATTAGGCACATTGAAAACATATTT
TACATCTGCTAATTATAAATGTTTATGCCTTGAATTTATGTTTTTACCCA
AACTTTTTGGTCTTGAATTATGGAGAAATCCCAAACAAAGGTCTCGAAAC
TTTTGATTTCCATTAGAGGATTTCAATGTAAGTATTTATCACTTAAAGAT
TGAAATGTGCA

Coding sequence (CDS) from alignment at sc0000066:728763..735623+

>TCONS_00006278 ID=TCONS_00006278|Name=TCONS_00006278|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at sc0000066:728763..735623+ (Clytia hemisphaerica)
ATGGCAGAGGCGCTGGCGATCACGTTAGAATTCAgtGGAGGTGCAGAGCT
TTTGTTTGATAAAGTGAAGAAACACGAGGTCGCTTTACAAGGGGATGATT
GGACGATTGGGAAACTTCTCTTTTGGATCAAGGACAATTTACTGAAAGAA
AGGCCTGAACTATTTATTCAAGGGAAAACAGTtcgaCCTGGAAttttggt
tttggtgaatgATGCAGATTGGGAGCTGATGGGAGAGTTGGAATATAAGC
TGGAAAAGAACGATTGTATAACCTTCATATCGACTTTGCATGGTggatga
ATGGCAGAGGCGCTGGCGATCACGTTAGAATTCAgtGGAGGTGCAGAGCT
TTTGTTTGATAAAGTGAAGAAACACGAGGTCGCTTTACAAGGGGATGATT
GGACGATTGGGAAACTTCTCTTTTGGATCAAGGACAATTTACTGAAAGAA
AGGCCTGAACTATTTATTCAAGGGAAAACAGTtcgaCCTGGAAttttggt
tttggtgaatgATGCAGATTGGGAGCTGATGGGAGAGTTGGAATATAAGC
TGGAAAAGAACGATTGTATAACCTTCATATCGACTTTGCATGGTggatga
ATGGCAGAGGCGCTGGCGATCACGTTAGAATTCAgtGGAGGTGCAGAGCT
TTTGTTTGATAAAGTGAAGAAACACGAGGTCGCTTTACAAGGGGATGATT
GGACGATTGGGAAACTTCTCTTTTGGATCAAGGACAATTTACTGAAAGAA
AGGCCTGAACTATTTATTCAAGGGAAAACAGTtcgaCCTGGAAttttggt
tttggtgaatgATGCAGATTGGGAGCTGATGGGAGAGTTGGAATATAAGC
TGGAAAAGAACGATTGTATAACCTTCATATCGACTTTGCATGGTggatga
ATGGCAGAGGCGCTGGCGATCACGTTAGAATTCAgtGGAGGTGCAGAGCT
TTTGTTTGATAAAGTGAAGAAACACGAGGTCGCTTTACAAGGGGATGATT
GGACGATTGGGAAACTTCTCTTTTGGATCAAGGACAATTTACTGAAAGAA
AGGCCTGAACTATTTATTCAAGGGAAAACAGTtcgaCCTGGAAttttggt
tttggtgaatgATGCAGATTGGGAGCTGATGGGAGAGTTGGAATATAAGC
TGGAAAAGAACGATTGTATAACCTTCATATCGACTTTGCATGGTggatga
ATGGCAGAGGCGCTGGCGATCACGTTAGAATTCAgtGGAGGTGCAGAGCT
TTTGTTTGATAAAGTGAAGAAACACGAGGTCGCTTTACAAGGGGATGATT
GGACGATTGGGAAACTTCTCTTTTGGATCAAGGACAATTTACTGAAAGAA
AGGCCTGAACTATTTATTCAAGGGAAAACAGTtcgaCCTGGAAttttggt
tttggtgaatgATGCAGATTGGGAGCTGATGGGAGAGTTGGAATATAAGC
TGGAAAAGAACGATTGTATAACCTTCATATCGACTTTGCATGGTggatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003586XLOC_003586Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006278-exon-sc0000066-1491911889:728763..729045TCONS_00006278-exon-sc0000066-1491911889:728763..729045Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1510915933:728763..729045TCONS_00006278-exon-sc0000066-1510915933:728763..729045Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1575043694:728763..729045TCONS_00006278-exon-sc0000066-1575043694:728763..729045Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1491911889:731008..731072TCONS_00006278-exon-sc0000066-1491911889:731008..731072Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1510915933:731008..731072TCONS_00006278-exon-sc0000066-1510915933:731008..731072Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1575043694:731008..731072TCONS_00006278-exon-sc0000066-1575043694:731008..731072Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1491911889:731693..731774TCONS_00006278-exon-sc0000066-1491911889:731693..731774Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1510915933:731693..731774TCONS_00006278-exon-sc0000066-1510915933:731693..731774Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1575043694:731693..731774TCONS_00006278-exon-sc0000066-1575043694:731693..731774Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1491911889:732047..732095TCONS_00006278-exon-sc0000066-1491911889:732047..732095Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1510915933:732047..732095TCONS_00006278-exon-sc0000066-1510915933:732047..732095Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1575043694:732047..732095TCONS_00006278-exon-sc0000066-1575043694:732047..732095Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1491911889:734965..735623TCONS_00006278-exon-sc0000066-1491911889:734965..735623Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1510915933:734965..735623TCONS_00006278-exon-sc0000066-1510915933:734965..735623Clytia hemisphaericaexon
TCONS_00006278-exon-sc0000066-1575043694:734965..735623TCONS_00006278-exon-sc0000066-1575043694:734965..735623Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006278-proteinTCONS_00006278-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:728763..735623 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
79.9681	80.4748	71.6905	77.0752	59.3283	49.7493	48.1414	49.6637	40.0201	34.6978	34.6983	26.5027	22.0712	22.5859	24.6993	29.2832	42.1623	39.3818	16.343	16.2276	31.962	31.484	39.7979	33.75	23.4328	24.1697	25.8633	19.2245	24.6016	24.5032
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015221Urm1
IPR012675Beta-grasp_dom
IPR016155Mopterin_synth/thiamin_S_b
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0034227tRNA thio-modification
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034227 tRNA thio-modification
cellular_component GO:0005737 cytoplasm
Blast
[Close]
BLAST of TCONS_00006278 vs. Swiss-Prot (Human)
Match: URM1 (Ubiquitin-related modifier 1 OS=Homo sapiens GN=URM1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.143e-39
Identity = 66/99 (66.67%), Postives = 78/99 (78.79%), Query Frame = 3 
Query:  249 MAEALAITLEFSGGAELLFDKVKKHEVALQGDD--WTIGKLLFWIKDNLLKERPELFIQGKTVRPGILVLVNDADWELMGELEYKLEKNDCITFISTLH 539
            MA  L++ +EF GGAELLFD +KKH V L G +  W I  LL WIK NLLKERPELFIQG +VRPGILVL+NDADWEL+GEL+Y+L+  D + FISTLH
Sbjct:    1 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLH 99
The following BLAST results are available for this feature:
BLAST of TCONS_00006278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
URM19.143e-3966.67Ubiquitin-related modifier 1 OS=Homo sapiens GN=UR... [more]
back to top