XLOC_003586 (gene) - C. hemisphaerica

Overview
NameXLOC_003586
Unique NameXLOC_003586
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000066:728763..735623+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003586 ID=XLOC_003586|Name=XLOC_003586|organism=Clytia hemisphaerica|type=gene|length=6861bp|location=Sequence derived from alignment at sc0000066:728763..735623+ (Clytia hemisphaerica)
CCCGACTGTAATCATGTATTGGCCAGATTTTGAGGCTAGATACATGGTGC
CGAGACCCCAAGTCTGGAAAATTACCGTACTTACCtgtaacaatccaaaa
gttttttaataatcaaatcgatctgattggtttaaaactaaaaattatgA
TGTATTCGTAATTGACCTAAATGAACCAATCAGTTCTCAGAAAAAGAGTT
TGACTGTTAAGGGCAATTTTGGATTGGTAAGTACTCAAAACTTCAAAGAT
GGCAGAGGCGCTGGCGATCACGTTAGAATTCAggtataaaaacaaaatat
atgtTCCTTTTATTTCTTGTCCTACTATCATCATCAAAGAGGCAGAATGT
TTCGATCTACAGAAATTCACCAGCATCTTTTCAAGagtttcaaaagcttt
ttctgcGTACATCATCGTTGAGAATGATTGAGAGGGtttgaaagttttga
gaaaaatgcctCCTTAGAAATGTTGCAGCTCCTCCCAGTCTGGAAATTGC
GACGTGTGCGCCGGATATGTCCGGCGTAAATTTGAGATTTGAGATCTGTT
GCCTTTGGCTTTTCCAAGTTAAGTTGGCGCAGCTCCGGCGTAACATTTCC
CTCCTTTCCAGACTGGAGCTCCTCTCGACCCACACGGTCTAACCGTGTAA
ATCAGTGCTTTTTACATATGGAAATACATTTCTTGATGAATAAGATCGTT
TTGTGTCTCTACATTCATTACAATTAAATTGACGTTTTAGTTTTTTGGAC
ATACACACACATAGACCAAATTTTAATTTAGGTTGTTTCCTTTGAACGAT
TCGGGAACAGTTTccgaaaaatctcttttcttcaggctacaatatcaaat
caaagaggatAAAACCTATTTCTGGCACACCGGTATCAAAACAGTGGAAT
TCTGTTACTGTAATCTAAAACAATCATtgaattccaatactttaatgcaa
aattaagtaaaattcatggaattccgatactttctctttaaagatTGCCT
GGAATTCTGTGCCAAAATTTATTATTAAAAATGATGTCGTCCATTAgaga
gtaattttttttttctggaatggcccatttgaAATTGCCAGACGGTCTAA
ATCGATAAAATTTATCATCGATTATCGATATTCACTCATTTTAACCTCAA
TTAGCTATTGATCCAATCGATGCAACCTCAATTAGCTATTGATCCAATCG
ATGCGATTGATGCGATCAATTATCAATCTATACCATCTGTGCATTGATAC
TATAAAAGGTAATCGATATTAATCTATAGTTCATTGATAACAATTGATAG
CTCGTCGATAGATAATCGTTGAATAATCGTTAATAGTTGATACTGCAAGG
TAATCGATAATAATCAATATCAGTTAAGGGGGTTTCAGTTATAGTCCGTT
ACAGCCCCCCCCATGTGGACAACATGGATTTTCTGTaataatcaaatttt
caaaaacttcaggatttccataacattcaagaaaaaattccaaaaaaccc
TGCCGTCCAGACTGATAAAGCTATCGATTATAGATTTTATAAATATATCA
TTTACAAGAGGGGcccaaaatttgtgtaggagagcataCTTTTGTAAAAC
TGTAATTATCTTTTATtctatgaatagataattagtgtcataaaaatctg
ttcTCCTTTATAAATTTTATGCCCCTCTTGTCTTCGCTACTGGTATCATC
AAAAGACCTCAAAAGCTTATTGATATTTTAGGTCTCACTTTTGCTCACTT
ATGAAGAATGTATTGGTCTGTATGTTATTGGACGATAGATTATGATTTTA
CCGTGAGGGCTTAGTATTACATTTGCATGTTTCATGATCCTGATTCCTTT
CTTTGGTCATGGTTTATCATAGAcagtgcgtctcaaaccgcgatattttg
agagcacggaagcgcgtcaaaacaccagcttttttagacttttgtcttgt
ttacccaaacgctgcaatcctgcgtaggctttgggctcaagactagaacc
cccaatgtttttttcattattttgagcaaaatatctaaaaatgaggaaaa
tctAAAGACATCACTTCCTCACTTTGCCCGGATCTctcagaaaatggctc
ttaataaGGGAGATATGATTGGGAACCCCCTGAAGGTGATCAGTTTTAAA
ATATGTGGTACCATTTGGCCTCTGAAAAAATACTAAAGTTCAACCCATGG
TTATGAACACATTGTATTAccattgaatttttttgttttatttagtGGAG
GTGCAGAGCTTTTGTTTGATAAAGTGAAGAAACACGAGGTCGCTTTACAA
GGGGATGATTGTAAGTTTGAGATTTATTTCAGTTGAGCCTGGTCGAGCTA
GAATCTAAGAATggctgtctgtgtgtctgtctgtgtgtctgtatGTATAT
ATATACTGTATGTCTGTACGTCActtcaaaactttggggcaggctggaga
cttcaatagtacgatttgattgaaattttgcacacttgttccttgggtga
atatcccTGGGAttcatcttttgaaaattttgattttttgggtccgggga
caagtttttcgccaaaacgggGCTAAAGCTTTGGGGCAGACTGGAGACTT
AaaacatggtcagatttggctgaaattttgcacacttgctcCTTGGCTGA
ATATCAGGTGTTTTTTacagttttgagaattttggtttttcGGGCTTGGG
GAcaagtttttcaccaaaacgtcAAAAGTTATCTTATAACAAGAATTTTC
TGTTGATGTTTATAATTGGGCCTACAAGTCAtttaaaagatactgaagtt
gagccagtgcagTTAGCACTTTCGACAGTGAGAATGTCtttttgacaatg
aaaataaatgtCATTAGAAATTAGTTTTAAAATCTTGTCATACCAAGGAA
AATAtttataatttgtttttctatCTTTAGGGACGATTGGGAAACTTCTC
TTTTGGATCAAGGACAATTTACTGAAAGAAAGGCCTGAACTATTTATTCA
AGGGAAAACAGTGTTAGTAAAACTATGGATGTCTTTGGGTTCATTTGGCT
CATTACTTAGAAGGAGATATACCTTGacatatttttaaaagtgaagAATA
GTATGGGAAAGATGGCGTTTCTAAATTGCCATGCTTCCATGTCAGATCTG
ACTAAAACTCACCACAACCAGTGTTCCATTTCATCCATATTCCTTATGAA
ATTTGAAATCTGAATAGGTATACAGAGGTAATGGATAGTTTTtatacttt
tcattttttgttttctctttttattttttttcagtcgaCCTGGAAttttg
gttttggtgaatgATGCAGATTGGGAGCTGATGGTTAGTCCTCGGTCTTG
TTGTTCTTATTCTTGTTGTTTTTAAGtaccgggtggtccaaaaaacTTTG
AATGTTTGGCAACGCCTTTGAGCAGAATAGATCAAAATATAAACTTGAAA
TTAATGTCATAGAAAAAGGAaagtttaacttaaattttgagctactactt
ttgaaatttggttcagtatttttgagtaatcggttttaaaagtgaaattt
cacttttcaaaatgaCCGAAAATGGTCGAAATGGGTGATTGAATTAACAA
CGAGAAAAAGACTGAACTAAAGACGTCTTAATAATGATTGTACTGGCaca
attttcttttctattttctgaagAAACTATTCAtaaggcaaaaaaacaaa
aacaaagaacttATTTGTTCACccttttaaacgttttttgcattttttga
cattaagtattaataacttttgaaccaattgTCCAAATGTATAAACTAAT
TGATCACAATTTAAGTTAGACCCTCCCCAATTTCAATAAAGCAAGGTGAA
CCTAACCGACCACTTTCTTAAAATGTCAcaaacatccaaagttttttatt
tcaaccaCCCTGTATACAGTATCTAACAGAAAcacatgatttatttttta
taaacgaGTGATACTTTATAGTGtaaactagacggttcccgtcgtcgcaa
acgccggttaacagttttgcttgcacatcaaaagcctttaaaatactata
atgtgggttaatgcCTGACATCGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttccagc
cgcggcgttcaaattttagaaaccttaacatatgttactgggctagcgtt
acagacatttttcataaactcatttagtatagtaagatattGTTTTAAGA
GGCCCCCCCAGGCGACACTCAATTCACGTATTCACGCAAAATTTTTTGCC
AATTCACGTATTCACGCGCGAAAAAAACCATtttcacgttcacgcgctga
ttttgcttttaattcttttgttaaacgattgtgaccttattgggctaaat
ttgacctttttatggccaacataaagttttctgcagctttttgaccttat
tctcgacagTGTCGACCTTTTAAGACCTCTTACAATTATTGGAGCTTTCA
TAGGGCAATGTTTAAAGTTTGTCTATCACGTCAAAGTTACAAAAAAACTA
CCTCTCTGGCGTACGGTGGTATAAACCCTGcctgaatttgctttttaagg
gAGGTAAGTGCAAAGTTAAGCCTTAGCTTTAAGGTTTCCCCccgaatttt
cttcgtcgcaggccctaaatatatattttttgagaataaatttaaatcgA
GGCTTGGCCTAAATTCATGGTCTGGAAAGTCGCGAGCTCCAAAGAGGTGG
TACAATCAGAGGACGCAAATTCCAAAGTTTGACCCCCTGTCTCATTGAAG
AAAAGCTGTGGAAAggaaaaagcgagcgaagcgagcacgaaAATTTTTTG
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCtaatatgccttgtttg
gtcaaacaattcattcagaatctttgattattttcaacactgaccattta
ctggtacaaatctggtacggcgagtgACGTACCCGCCTTACACGGTGCGG
TGTCACaagagtttttttctgaatgttCGATGATGCAATCATATGAAATT
TTTTAGAACTATCTACCTACTTTTGTAAATTATGGAAGAATCAAATACCC
TTCACTGTCTCCAAGTTCatgcggtatcattttgtgtagtgcatttagta
acaatataagcaattacagaaagacgaccatcattagcgccgacgaagaa
aattttctcaattagACTTATTTGTTTTGGCTCAAAACACTCTCGCTGGA
TGcaatatttgcatcacaaaatgcgcccttagaaaaataagaaaaaataa
aaatatttgtttctgtttccatttttgattattttgaataactttacaaT
GGCAATAGGTCAATATGATATCAAGgattatgcgagcgaagcgagcaaga
aaattttacatatttaggtttattcagttttagacaataatttgcttttc
acgttTCACGCTCGaaatctcgattcacgaattcacgctgCTAAAATCTT
ACTTTCACGTTCACGCGGatatctcaattcacgtattcacgcgttgaaaa
agtccaattcacgtattcacgacagaaaaaagggtcattcacgcgtcacg
ccagcccctgggggagccccttTTAAATAAATATGTTTGCAATATTCCCA
GCAAAAGTGGATAAAAATCTCGCTTTCAAATGTTTAATTATCATTGTTTT
AGGGAGAGTTGGAATATAAGCTGGAAAAGAACGATTGTATAACCTTCATA
TCGACTTTGCATGGTggatgaaaagaaaagaagtgcCAAAAGGGCAAAAA
TTACAACATCAACGCCATATGATCGAAATCAGGGACTGTTCATGTGAATG
AATGATCATGCCAGGATCTGATCTGTAATTATCCTTGGAAAATTTGATAg
aatattttatataaaaagctgcattgggctcttccagaaagttTTCGTAC
ATGGGAGATGGGTGGAGGATATGTTGGATATATTGTTcgaggggtagtga
aaaatctaaaaaatcggCCTTGATTTTGGGGCATTACTGCTCTGTTTAGG
AGTAAAATGTCCGGGGCGTAAagttccaaaaaatgttatatcctccaccc
ccatattcaatttttttcggaagaGCCCTATCATTTATTAAAAGCTTTTG
TATCATCCAATGTAAGAAATGTTTATATTAGGCACATTGAAAACATATTT
TACATCTGCTAATTATAAATGTTTATGCCTTGAATTTATGTTTTTACCCA
AACTTTTTGGTCTTGAATTATGGAGAAATCCCAAACAAAGGTCTCGAAAC
TTTTGATTTCCATTAGAGGATTTCAATGTAAGTATTTATCACTTAAAGAT
TGAAATGTGCA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006278TCONS_00006278Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00006278-proteinTCONS_00006278-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:728763..735623 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
URM1ubiquitin-related modifier 1 isoform a Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
79.97	80.47	71.69	77.08	59.33	49.75	48.14	49.66	40.02	34.7	34.7	26.5	22.07	22.59	24.7	29.28	42.16	39.38	16.34	16.23	31.96	31.48	39.8	33.75	23.43	24.17	25.86	19.22	24.6	24.5