TCONS_00005654-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005654-protein
Unique Name	TCONS_00005654-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	325

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005654-protein ID=TCONS_00005654-protein|Name=TCONS_00005654-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MFQKLDSINIVPLDDIYKAQRLATKEILNTPLVKLNHEVEGKEIYLKLEN
LQPVGSFKVRGGYNAIQNILENGKIPSSVITASAGNFAQGLAWAAKKSGL
FCQSIVPDTAPEIKLEGLKALGADAIKVPFDDWWNVMSTGKTDIEGHFIH
ACCEYDCLAGNGVIGLEIVDQLEDFDSIICPYGGGSNLLGNASALKQLKP
NVKCYACEVDVAAPLYISLRKGVPSKVDEWQRTYIDGMNGKEMFPCMWKM
ATNLVQDSILVNTDQISSALRLMLNKNKILAEGAGAATVAAAMSEKVPEG
KIVCVISGGNIDQKTLMTILNGETP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003196	XLOC_003196	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005654	TCONS_00005654	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001926	TrpB-like_PLP-dep

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.1100		coord: 34..144 e-value: 3.5E-24 score: 84.8
None	No IPR available	GENE3D	3.40.50.1100		coord: 145..322 e-value: 1.2E-29 score: 103.1
IPR001926	Tryptophan synthase beta subunit-like PLP-dependent enzyme	PFAM	PF00291	PALP	coord: 25..308 e-value: 6.1E-58 score: 196.4
IPR001926	Tryptophan synthase beta subunit-like PLP-dependent enzyme	SUPERFAMILY	53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes	coord: 13..315

Blast

[Close]

BLAST of TCONS_00005654-protein vs. Swiss-Prot (Human)
Match: SRR (Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.429e-43
Identity = 109/334 (32.63%), Postives = 171/334 (51.20%), Query Frame = 0

Query:   11 VPLDDIYKAQRLATKEILNTPLV--KLNHEVEGKEIYLKLENLQPVGSFKVRGGYNAIQNILENG--KIPSSVITASAGNFAQGLAWAAKKSGLFCQSIVPDTAPEIKLEGLKALGADAIKV-PFDDWW-NVMSTGKTDIEGHFIHACCEYDCLAGNGVIGLEIVDQLEDFDSIICPYGGGSNLLGNASALKQLKPNVKCYACEVDVAAPLYISLRKG-------VPSKVDEWQRTYIDGMNGKEMFPCMWKMATNLVQDSILVNTDQISSALRLMLNKNKILAEGAGAATVAAAMSEKV----PEGKIVC-VISGGNIDQKTLMT-ILNGETP 325
            +   D+ KA       I  TP++   + +++ G+ ++ K E  Q  GSFK+RG  NA+++++ +   + P +V+T S+GN  Q L +AAK  G+    +VP TAP+ K   ++A GA  +   P D+   NV      + EG  +H   E   +AG G I LE+++Q+   D+++ P GGG  L G A  +K LKP+VK YA E   A   Y S  KG        P  + +  ++ I G+N        W +  +LV D   V  D+I  A +L+  + K+L E      VAA +S+      PE K +C V+SGGN+D  + +T +   E P
Sbjct:    7 ISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEETEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSI-GLN-------TWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGNVDLTSSITWVKQAERP 332

The following BLAST results are available for this feature:

BLAST of TCONS_00005654-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005654-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SRR	7.429e-43	32.63	Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1	[more]

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TCONS_00005654-protein (polypeptide) - C. hemisphaerica