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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005654 ID=TCONS_00005654|Name=TCONS_00005654|organism=Clytia hemisphaerica|type=transcript|length=1333bp
TTTAGTTGAAGTATACCAAAGTCCATTGGTCAGGAAAACCACTACATGAa
cggaaaatttttatattgagATAACAGTTTGAGTATGTTTCAGAAACTAG
ATTCCATCAATATTGTACCATTAGATGATATTTACAAGGCGCAAAGGTTA
GCAACGAAAGAAATCTTAAATACACCTCTTGTGAAATTAAATCATGAAGT
CGAGGGAAAAGAAATCTACTTGAAACTCGAGAATTTGCAGCCTGTTGGAA
GCTTTAAAGTTCGAGGAGGATATAATGCTATTCAAAACATATTAGAAAAT
GGAAAGATTCCTTCTTCAGTGATAACAGCCAGTGCTGGTAACTTTGCTCA
AGGTTTAGCATGGGCAGCGAAGAAGTCTGGTCTTTTCTGTCAATCAATAG
TCCCTGATACAGCACCGGAGATCAAACTTGAAGGATTGAAAGCACTGGGA
GCTGATGCAATCAAAGTACCTTTTGATGACTGGTGGAATGTTATGTCGAC
AGGAAAGACAGATATTGAAGGACATTTTATCCATGCTTGTTGTGAATATG
ATTGTTTAGCAGGGAATGGTGTCATAGgtctgGAAATTGTGGACCAGTTG
GAGGAtttcgattccatcatttgtcCATACGGTGGCGGCTCCAATCTCCT
TGGCAACGCATCTGCATTAAAGCAGCTCAAACCTAACGTCAAATGTTATG
CATGTGAAGTGGACGTTGCTGCCCCGCTATATATATCATTACGTAAAGGT
GTTCCTTCAAAAGTCGACGAATGGCAACGTACGTACATCGACGGGATGAA
CGGGAAAGAAATGTTCCCGTGTATGTGGAAAATGGCAACAAATTTAGTTC
AGGATTCAATATTAGTTAACACAGATCAAATCAGCTCCGCCCTTCGCCTT
ATgcttaacaaaaacaaaatcttggCGGAAGGGGCGGGTGCTGCTACTGT
GGCGGCGGCAATGTCGGAGAAAGTTCCTGAAGGCAAAATTGTTTGTGTCA
TTTCTGGTGGAAATATTGATCAGAAAACTTTGATGACAATTTTGAATGGC
GAAACACCCTAATTGGCAAGTAAGAACATAGCTTAGTAAGAACGAAGATT
GGAATGGAAACTCTTCCAAAACTTATAAGAATTATTACTTACATTATGTT
ATTTAAGTACATTACTTATTTTCAAGGAGTAACCAGCTTCATTATCTTCA
CTTTGAATTTAATACAccgaaaaaattttaaatttcaatctCAAATTTGT
GTACTACTTCCAAACAAGTTTGTCTCGATGTTTGATATTTGAACCCAATA
AACACCCCTCTCAATTGATATAACTTGGAATTA Run BLAST on NCBI protein sequence of TCONS_00005654-protein >TCONS_00005654-protein ID=TCONS_00005654-protein|Name=TCONS_00005654-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MFQKLDSINIVPLDDIYKAQRLATKEILNTPLVKLNHEVEGKEIYLKLEN
LQPVGSFKVRGGYNAIQNILENGKIPSSVITASAGNFAQGLAWAAKKSGL
FCQSIVPDTAPEIKLEGLKALGADAIKVPFDDWWNVMSTGKTDIEGHFIH
ACCEYDCLAGNGVIGLEIVDQLEDFDSIICPYGGGSNLLGNASALKQLKP
NVKCYACEVDVAAPLYISLRKGVPSKVDEWQRTYIDGMNGKEMFPCMWKM
ATNLVQDSILVNTDQISSALRLMLNKNKILAEGAGAATVAAAMSEKVPEG
KIVCVISGGNIDQKTLMTILNGETP Run BLAST on NCBI transcript from alignment at sc0000054:484133..486000- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005654 ID=TCONS_00005654|Name=TCONS_00005654|organism=Clytia hemisphaerica|type=transcript|length=1868bp|location=Sequence derived from alignment at sc0000054:484133..486000- (Clytia hemisphaerica)
TTTAGTTGAAGTATACCAAAGTCCATTGGTCAGGAAAACCACTACATGAA
CGGAAAATTTTTATATTGAGATAACAGTTTGAGTATGTTTCAGAAACTAG
ATTCCATCAATATTGTACCATTAGATGATATTTACAAGGCGCAAAGGTTA
GCAACGAAAGAAATCTTAAATACACCTCTTGTGAAATTAAATCATGAAGT
CGAGGGAAAAGAAATCTACTTGAAACTCGAGAATTTGCAGCCTGTTGGAA
GCTTTAAAGTTCGAGGAGGATATAATGCTATTCAAAACATATTAGAAAAT
GGAAAGATTCCTTCTTCAGTGATAACAGCCAGTGCTGGTAACTTTGCTCA
AGGTTTAGCATGGGCAGCGAAGAAGTCTGGTCTTTTCTGTCAATCAATAG
TCCCTGATACAGCACCGGAGATCAAACTTGAAGGATTGAAAGCACTGGGA
GCTGATGCAATCAAAGTACCTTTTGATGACTGGTGGAATGTTATGTCGAC
AGGAAAGACAGATATTGAAGGACATTTTATCCATGCTTGTTGTGAATATG
ATTGTTTAGCAGGGAATGGTGTCATAGGTAAATATACTTCGAATGAATAT
TTATGTTATAAGTCCCATTTTCTAGATTGGTCATATTTCATTTAAGAAAT
TCAAAAAAATGAAAAAACTACCCCTAAGTTTTAAAATAAGGAGGAGGTGT
GCCAAATTTCAGCTCCTTAAACCAATTATTCCGCTCTTTACGCTGCCCCA
AAGTTTGTGGACAAACTCACAAACTCACAAACAAACATTCTGAGATTCTA
GCTCAACTGAAGTTGAGAAAACATTTCCAAATTTTGGAAATATCATATTT
GCAAAAGTTGGAAATATTTTAAAAATATGATTATTCAATGAATGTTCAGA
TTTGTACCGATTGTACAATTGTATCCAGAGCCACTTGCACAACTTTTTTT
ATTTTACTGATTACCCCTCTTTCTTAACTCTTTCATTGAGACATTAATCA
AAGGCAAAGCTTTTGGTCAAAATAGAGAATTGGTTTTAACTACTTAAAAG
AAGTTATCTTTTAAGGTGTTCACTATATAAAATATATAATGGTTGAACTT
TTTCTTTAAAAGGTCTGGAAATTGTGGACCAGTTGGAGGATTTCGATTCC
ATCATTTGTCCATACGGTGGCGGCTCCAATCTCCTTGGCAACGCATCTGC
ATTAAAGCAGCTCAAACCTAACGTCAAATGTTATGCATGTGAAGTGGACG
TTGCTGCCCCGCTATATATATCATTACGTAAAGGTGTTCCTTCAAAAGTC
GACGAATGGCAACGTACGTACATCGACGGGATGAACGGGAAAGAAATGTT
CCCGTGTATGTGGAAAATGGCAACAAATTTAGTTCAGGATTCAATATTAG
TTAACACAGATCAAATCAGCTCCGCCCTTCGCCTTATGCTTAACAAAAAC
AAAATCTTGGCGGAAGGGGCGGGTGCTGCTACTGTGGCGGCGGCAATGTC
GGAGAAAGTTCCTGAAGGCAAAATTGTTTGTGTCATTTCTGGTGGAAATA
TTGATCAGAAAACTTTGATGACAATTTTGAATGGCGAAACACCCTAATTG
GCAAGTAAGAACATAGCTTAGTAAGAACGAAGATTGGAATGGAAACTCTT
CCAAAACTTATAAGAATTATTACTTACATTATGTTATTTAAGTACATTAC
TTATTTTCAAGGAGTAACCAGCTTCATTATCTTCACTTTGAATTTAATAC
ACCGAAAAAATTTTAAATTTCAATCTCAAATTTGTGTACTACTTCCAAAC
AAGTTTGTCTCGATGTTTGATATTTGAACCCAATAAACACCCCTCTCAAT
TGATATAACTTGGAATTA Coding sequence (CDS) from alignment at sc0000054:484133..486000- >TCONS_00005654 ID=TCONS_00005654|Name=TCONS_00005654|organism=Clytia hemisphaerica|type=CDS|length=1956bp|location=Sequence derived from alignment at sc0000054:484133..486000- (Clytia hemisphaerica)
GTCTGGAAATTGTGGACCAGTTGGAGGATTTCGATTCCATCATTTGTCCA
TACGGTGGCGGCTCCAATCTCCTTGGCAACGCATCTGCATTAAAGCAGCT
CAAACCTAACGTCAAATGTTATGCATGTGAAGTGGACGTTGCTGCCCCGC
TATATATATCATTACGTAAAGGTGTTCCTTCAAAAGTCGACGAATGGCAA
CGTACGTACATCGACGGGATGAACGGGAAAGAAATGTTCCCGTGTATGTG
GAAAATGGCAACAAATTTAGTTCAGGATTCAATATTAGTTAACACAGATC
AAATCAGCTCCGCCCTTCGCCTTATGCTTAACAAAAACAAAATCTTGGCG
GAAGGGGCGGGTGCTGCTACTGTGGCGGCGGCAATGTCGGAGAAAGTTCC
TGAAGGCAAAATTGTTTGTGTCATTTCTGGTGGAAATATTGATCAGAAAA
CTTTGATGACAATTTTGAATGGCGAAACACCCTAAATGTTTCAGAAACTA
GATTCCATCAATATTGTACCATTAGATGATATTTACAAGGCGCAAAGGTT
AGCAACGAAAGAAATCTTAAATACACCTCTTGTGAAATTAAATCATGAAG
TCGAGGGAAAAGAAATCTACTTGAAACTCGAGAATTTGCAGCCTGTTGGA
AGCTTTAAAGTTCGAGGAGGATATAATGCTATTCAAAACATATTAGAAAA
TGGAAAGATTCCTTCTTCAGTGATAACAGCCAGTGCTGGTAACTTTGCTC
AAGGTTTAGCATGGGCAGCGAAGAAGTCTGGTCTTTTCTGTCAATCAATA
GTCCCTGATACAGCACCGGAGATCAAACTTGAAGGATTGAAAGCACTGGG
AGCTGATGCAATCAAAGTACCTTTTGATGACTGGTGGAATGTTATGTCGA
CAGGAAAGACAGATATTGAAGGACATTTTATCCATGCTTGTTGTGAATAT
GATTGTTTAGCAGGGAATGGTGTCATAGGTCTGGAAATTGTGGACCAGTT
GGAGGATTTCGATTCCATCATTTGTCCATACGGTGGCGGCTCCAATCTCC
TTGGCAACGCATCTGCATTAAAGCAGCTCAAACCTAACGTCAAATGTTAT
GCATGTGAAGTGGACGTTGCTGCCCCGCTATATATATCATTACGTAAAGG
TGTTCCTTCAAAAGTCGACGAATGGCAACGTACGTACATCGACGGGATGA
ACGGGAAAGAAATGTTCCCGTGTATGTGGAAAATGGCAACAAATTTAGTT
CAGGATTCAATATTAGTTAACACAGATCAAATCAGCTCCGCCCTTCGCCT
TATGCTTAACAAAAACAAAATCTTGGCGGAAGGGGCGGGTGCTGCTACTG
TGGCGGCGGCAATGTCGGAGAAAGTTCCTGAAGGCAAAATTGTTTGTGTC
ATTTCTGGTGGAAATATTGATCAGAAAACTTTGATGACAATTTTGAATGG
CGAAACACCCTAAATGTTTCAGAAACTAGATTCCATCAATATTGTACCAT
TAGATGATATTTACAAGGCGCAAAGGTTAGCAACGAAAGAAATCTTAAAT
ACACCTCTTGTGAAATTAAATCATGAAGTCGAGGGAAAAGAAATCTACTT
GAAACTCGAGAATTTGCAGCCTGTTGGAAGCTTTAAAGTTCGAGGAGGAT
ATAATGCTATTCAAAACATATTAGAAAATGGAAAGATTCCTTCTTCAGTG
ATAACAGCCAGTGCTGGTAACTTTGCTCAAGGTTTAGCATGGGCAGCGAA
GAAGTCTGGTCTTTTCTGTCAATCAATAGTCCCTGATACAGCACCGGAGA
TCAAACTTGAAGGATTGAAAGCACTGGGAGCTGATGCAATCAAAGTACCT
TTTGATGACTGGTGGAATGTTATGTCGACAGGAAAGACAGATATTGAAGG
ACATTTTATCCATGCTTGTTGTGAATATGATTGTTTAGCAGGGAATGGTG
TCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005654-exon-sc0000054-1575043694:485424..486000 | TCONS_00005654-exon-sc0000054-1575043694:485424..486000 | Clytia hemisphaerica | exon |
| TCONS_00005654-exon-sc0000054-1575043694:484133..484888 | TCONS_00005654-exon-sc0000054-1575043694:484133..484888 | Clytia hemisphaerica | exon |
| TCONS_00005654-exon-sc0000054-1510915933:485424..486000 | TCONS_00005654-exon-sc0000054-1510915933:485424..486000 | Clytia hemisphaerica | exon |
| TCONS_00005654-exon-sc0000054-1510915933:484133..484888 | TCONS_00005654-exon-sc0000054-1510915933:484133..484888 | Clytia hemisphaerica | exon |
| TCONS_00005654-exon-sc0000054-1491911889:485424..486000 | TCONS_00005654-exon-sc0000054-1491911889:485424..486000 | Clytia hemisphaerica | exon |
| TCONS_00005654-exon-sc0000054-1491911889:484133..484888 | TCONS_00005654-exon-sc0000054-1491911889:484133..484888 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:484133..486000 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001926 | TrpB-like_PLP-dep |
Blast
BLAST of TCONS_00005654 vs. Swiss-Prot (Human)
Match: SRR (Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 6.038e-38 Identity = 109/334 (32.63%), Postives = 171/334 (51.20%), Query Frame = 1
Query: 115 VPLDDIYKAQRLATKEILNTPLV--KLNHEVEGKEIYLKLENLQPVGSFKVRGGYNAIQNILENG--KIPSSVITASAGNFAQGLAWAAKKSGLFCQSIVPDTAPEIKLEGLKALGADAIKV-PFDDWW-NVMSTGKTDIEGHFIHACCEYDCLAGNGVIGLEIVDQLEDFDSIICPYGGGSNLLGNASALKQLKPNVKCYACEVDVAAPLYISLRKG-------VPSKVDEWQRTYIDGMNGKEMFPCMWKMATNLVQDSILVNTDQISSALRLMLNKNKILXXXXXXXXXXXXMSEKV----PEGKIVC-VISGGNIDQKTLMT-ILNGETP 1059
+ D+ KA I TP++ + +++ G+ ++ K E Q GSFK+RG NA+++++ + + P +V+T S+GN Q L +AAK G+ +VP TAP+ K ++A GA + P D+ NV + EG +H E +AG G I LE+++Q+ D+++ P GGG L G A +K LKP+VK YA E A Y S KG P + + ++ I G+N W + +LV D V D+I A +L+ + K+L E VAA +S+ PE K +C V+SGGN+D + +T + E P
Sbjct: 7 ISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEETEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSI-GLN-------TWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGNVDLTSSITWVKQAERP 332
The following BLAST results are available for this feature:
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