TCONS_00005099-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005099-protein
Unique Name	TCONS_00005099-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	495

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005099-protein ID=TCONS_00005099-protein|Name=TCONS_00005099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp
MFLLVWFSLEFAFRLWSCGYISRYQGIKGRLNFLMSLYMMIDIFVILSTA
ITLLMQVNGNSFATILRVTRFMQVFRILRVDRQRGDIRTMGNVVRKHCKE
LITVYFVGFVLMFSATYLVYLCEKHISQNDDKLREEVSINNMADGLYWAA
ITVTSVGYGDFAPVTWAGKLFCAFFALIGCAFFSLPAGILGTGFALQQKK
EKRYIKVRNPAAYLIQTMWRNYALQKGNDKFEATWNFLLSKLRDNDEDDE
TEGLIPLLTEKFPNRLPSPPLKPRTRRFSLPKISKIRPDAETQVQKYQAA
IQTPCSPVSNPLIHLEEGIKKIGKIVTKRNNNRADVLKKEDVMLPRKGYQ
KLSASPDKKSTFCRETIRLLHQNGNKESIQENIHRRYKTIYRFILKLHYR
IAIKSFKSKRHPFVNMQDLMEKNAMSHVEMLANIKGMRETINNLQQELLE
LRYTMEEIREGQSTKKKKNVQRIKSFSESDLTQLNRQRKFCNAIN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002895	XLOC_002895	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005099	TCONS_00005099	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003937	K_chnl_volt-dep_KCNQ
IPR028325	VG_K_chnl
IPR005821	Ion_trans_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006813	potassium ion transport
GO:0055085	transmembrane transport
GO:0006811	ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005249	voltage-gated potassium channel activity
GO:0005216	ion channel activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0008076	voltage-gated potassium channel complex

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0006813	potassium ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0008076	voltage-gated potassium channel complex
molecular_function	GO:0005216	ion channel activity
molecular_function	GO:0005249	voltage-gated potassium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 427..461
None	No IPR available	GENE3D	1.10.287.70		coord: 94..205 e-value: 2.3E-24 score: 84.6
None	No IPR available	GENE3D	1.20.120.350		coord: 1..93 e-value: 8.1E-13 score: 47.7
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 2..195
IPR003937	Potassium channel, voltage dependent, KCNQ	PRINTS	PR01459	KCNQCHANNEL	coord: 87..106 score: 40.16 coord: 6..25 score: 40.48 coord: 26..45 score: 44.19
IPR028325	Voltage-gated potassium channel	PRINTS	PR00169	KCHANNEL	coord: 71..97 score: 22.76 coord: 139..161 score: 39.71 coord: 33..53 score: 33.48 coord: 168..194 score: 27.19
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 2..201 e-value: 5.8E-20 score: 71.5

Blast

[Close]

BLAST of TCONS_00005099-protein vs. Swiss-Prot (Human)
Match: KCNQ5 (Potassium voltage-gated channel subfamily KQT member 5 OS=Homo sapiens GN=KCNQ5 PE=1 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 6.812e-66
Identity = 153/491 (31.16%), Postives = 256/491 (52.14%), Query Frame = 0

Query:    3 LLVWFSLEFAFRLWSCGYISRYQGIKGRLNFLMSLYMMIDIFVILSTAITLLMQVNGNSFAT-ILRVTRFMQVFRILRVDRQRGDIRTMGNVVRKHCKELITVYFVGFVLMFSATYLVYLCEKHISQNDDKLREEVSINNMADGLYWAAITVTSVGYGDFAPVTWAGKLFCAFFALIGCAFFSLPAGILGTGFAL---QQKKEKRYIKVRNPAAYLIQTMWRNYALQKGNDKFEATWNFLLSKLRDNDEDDETEGLIPLLTEKFPNRLPSPPLKPRTRRFSLPKISKIRPDAETQVQKYQAAIQTPCSPVSNPLIHLEEGIKKIGKIVTKRNNNRADVLKKEDVMLPRKGYQKLSASPDKKSTFCRETIRLLHQNGNKESIQ-ENIHRRYKTIYRFILKLHYRIAIKSFKSKRHPFVNMQDLMEKNAMSHVEMLANIKGMRETINNLQQELLELRYTMEEIREGQSTKKKKNVQRIKSFSES--DLTQLNR 486
            ++V F LEF  R+WS G   RY+G +GRL F    + +ID  V++++   +  +  GN FAT  LR  RF+Q+ R++R+DR+ G  + +G+VV  H KELIT +++GF+++  +++LVYL EK  ++           +  AD L+W  IT+T++GYGD  P+TW G+L  A FAL+G +FF+LPAGILG+GFAL   +Q ++K + K RNPAA LIQ +WR+YA  + +    ATW   L  L       + +G      E   ++  S   K R R  S        P  ++ ++  QA++    SP ++  I  E    K+ K  +  +  R           P    +     P   +     T  +  + G +  +  E++    KT+ R I  + + +A + FK    P+ +++D++E+ +  H++ML  IK ++  ++ +             + +GQ T  KK+ ++I +  E+  DL+ L R
Sbjct:  167 MIVVFGLEFIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDTIVLIASIAVVSAKTQGNIFATSALRSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDANKE---------FSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSI-ATWKPHLKALHTCSPTKKEQG------EASSSQKLS--FKERVRMAS--------PRGQS-IKSRQASVGDRRSPSTD--ITAEGSPTKVQKSWSFNDRTR---------FRPSLRLKSSQPKPVIDADTALGTDDVYDEKGCQCDVSVEDLTPPLKTVIRAIRIMKFHVAKRKFKETLRPY-DVKDVIEQYSAGHLDMLCRIKSLQTRVDQI-------------LGKGQITSDKKSREKITAEHETTDDLSMLGR 605

The following BLAST results are available for this feature:

BLAST of TCONS_00005099-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005099-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KCNQ5	6.812e-66	31.16	Potassium voltage-gated channel subfamily KQT memb...	[more]

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TCONS_00005099-protein (polypeptide) - C. hemisphaerica