|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005099 ID=TCONS_00005099|Name=TCONS_00005099|organism=Clytia hemisphaerica|type=transcript|length=3338bp
caaaaattacaaaatctttgATAGGGCAAATTTATGAAATGACCGTAATA
TTACCCCCTGTAATAAATCATGTTACCTCCAGAGTACAGACCCTGCTGTA
TATTATATCCCTTACAATTGgaatgagctggagtttttataagatacttc
actaattggtcatttgaagtgatagagatgacgcgttctttagaaaaagt
aataattactggttaacgaccaaccaaatcaaataagagcttgtaaaaac
tccagctagTCCCTTACAATTAGTTCTCCCAATTAGGCGCGAAAGACTAG
AAAATAAGTGTTTATTTGCTTCACAAGATAGATATTATGCATATTGCGTC
CAACCCCAGATGCTGGGAACCACGGACGTTAAATCGtgcagtaagtaagt
aagtatacaTCTAATTTTAACGGCCGCAATCTCGGGCAAAAGATctgtaa
atttttcaaaaattcttcaaTATAGTGCCAAGAAAAGCCTTTTTGAAACC
TGGGAAGTTCCCCCAAATGAACCATAAGTGGTTATTTAGCAGAAGACACC
TACAGGCTTGTTAGCAGTCCTTGtggtttttagacttccaaagactgaaa
atgactgaaaatgggtGAACTTCAGCCACACATGTGGTGGGTGCACCAGA
GAGCTCTGAAAAGTTGTCTATAATTGATCAAACCATCTCAATAATAATGG
TCTAATAGATGTCTtctcgaaaaagttgaagagcAAAACTCATTGAACCT
TCAATCTTCAATCTCAGACAAATAGCCTGAAGACTTTGCAAAAATTCATT
TCCTTCAATGTCGAGTGAATTTGGCATATGGAATTGTTACCCAAACTCtt
caaatacaataaaaacaacattggtCCTGGTAAAAATGGTTTTTCAgagc
ttattttgaaatttttcatgcatttttgaaaagtctacaacctttttGTC
CGGAATTGCAATTTCGTCTCGAATTTCTATGCACCACGGCTTAGAATCTC
AATGCCCTCCCCTTATCGAAAGACGTGGGTAAACAAAAAAAAGGTTATAC
TTAGTTTATAGCATTGCAAAATTTTCGCTGCCTATTTAATTGGGTCAAAT
CAGATTCACTAAATGATTTGATCCTTTGtacattctttttcttttttgtc
gatTGTCCCTCTCGGATCTCTTCCATTGTGTATCTTAGCTCTAAAAGCTC
TTGTTGCAGATTATTGATTGTTTCTCTCATTCCTTTAATGTTGGCTAACA
TCTCCACGTGTGACATTGCATTCTTTTCCATCAGATCTTGCATATTAACG
AATGGATGTCTCTTACTTTTGAACGATTTGATTGCAATTCTATAGTGTAA
TTTAAGGATGAAACGATAGATCGTCTTATATCGTCGATGTATGTTCTCCT
GTATGCTTTCTTTATTACCATTTTGATGAAGTAGCCTAATGGTCTCTCGG
CAGAAGGTTGATTTCTTGTCCGGTGATgctgataatttttgatatcCTTT
TCTCGGCAACATGACATCTTCTTTCTTCAAAACATCTGCACGGTTATTAT
TCCGTTTCGTGacaattttcccgattttcttGATTCCTTCTTCTAAATGG
ATTAACGGATTCGAAACTGGTGAACACGGTGTTTGTATAGCGGCTTGATA
TTTCTGAACTTGCGTTTCTGCATCTGGTCGTATTTTGGAGATTTTGGGTA
AAGAGAATCGACGCGTGCGTGGCTTTAGGGGTGGTGAAGGTAAACGGTTC
GGAAATTTTTCAGTTAGCAAAGGAATCAACCCCTCTGTTTCATCATCCTC
ATCATTGTCACGaagttttgataaaagaaagttCCAAGTTGCTTCAAACT
TATCATTACCTTTTTGCAAAGCATAATTTCGCCACATTGTTTGAATAAGA
TAAGCAGCAGGATTCCGTACTTTAATGTaacgtttttctttcttttgttg
caGTGCGAATCCCGTACCCAAAATGCCGGCCGGTAAAGAGAAGAAGGCAC
ATCCGATCAAAGCGAAAAATGCGCAGAAGAGTTTGCCAGCCCAAGTTACG
GGAGCAAAATCACCATATCCTACTGAAGTGACCGTAATGGCAGCCCAATA
GAGTCCGTCCGCCATATTATTAATGGATACCTCCTCTCTAAGTTTGTCAT
CATTTTGACTGATATGTTTCTCACATAAGTATACCAAATAGGTAGCCGAA
AACATCAGTACAAATCCTACAAAATATACAGTGATTAATTCTTTGCAGTG
CTTCCGTACAACGTTTCCCATTGTCCGTATATCTCCACGTTGCCGGTCTA
CTCTCAGTATACGGAAAACTTGCATGAATCGAGTTACACGAAGAATGGTT
GCAAATGAGTTACCATTGACTTGCATTAGCAGTGTGATAGCCGTtgataa
aatcacaaaaatatcaATCATCATATATAGAGACATCAAAAAGTTGAGTC
GACCTTTAATACCTTGATATCTTGAGATATAACCACACGACCATAATCGG
AATGCGAATTCTAACGAAAACCAAACTAATAAAAACATTTCGNTAACCAC
ACGACCATAATCGGAATGCGAATTCTAACGAAAACCaaactaataaaaaa
atttcgaacttGATAACAACACCATGCAACGCTTTTTCAAGACTTTCAAT
CGTATGCAGTACACCAACTATAAGGCTACCAGTTATCAGTAAAAGCGATA
TTGAATGATACATGACCGCCCATTTCGTATTTGGGCGCTCCAGCAAGCAA
AACATCCATTTTTTCATGACTCGATAGTTTAGAGGTAATTGTTCTTCCTC
ATATTCAAGAAGAGATGCCTTTTTCTCCATCTTCCAGAATTTTCTGAGAA
ACAATTTATCCTTATATATGCTGTTTGATCAAATGTTTACCACGGTGTTA
TGTTTTCACAGGGTGTTGACTGAATCTGGAAATTCTCCCCGTTAAGTTTC
TAATGAAGACTTCACCCTACTGTGAAGTGACATGTAGAGTTATCCTTCCG
TTATCTCCGTATGTTGCCCttcctcttctaattttgatCAGAATGTCATG
GATTCCTGCTTTTTATATGTTACATTTCCCAGTGTTGAAGATGAAATTTT
CTATTGATAATCTCAACCTTTCCGCTAATGGGATAGAGATATTTCCTCGA
TAATAATAACGTTTTAATCGTCTTTGAGTCTTTCTCCGTCCCTAATAGAA
TCACTATTTTCTCTATTATTATGTCTATAGTTGTTTTTCTACCTTTTTCA
CTAAATTATATACCCAAAGAGAAGAAAAAGTAATCATTTTTAGTCCTTTT
TTACGTTTTGCCCACTTGCTGATTTTGTTTTGGGCTTG Run BLAST on NCBI protein sequence of TCONS_00005099-protein >TCONS_00005099-protein ID=TCONS_00005099-protein|Name=TCONS_00005099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp
MFLLVWFSLEFAFRLWSCGYISRYQGIKGRLNFLMSLYMMIDIFVILSTA
ITLLMQVNGNSFATILRVTRFMQVFRILRVDRQRGDIRTMGNVVRKHCKE
LITVYFVGFVLMFSATYLVYLCEKHISQNDDKLREEVSINNMADGLYWAA
ITVTSVGYGDFAPVTWAGKLFCAFFALIGCAFFSLPAGILGTGFALQQKK
EKRYIKVRNPAAYLIQTMWRNYALQKGNDKFEATWNFLLSKLRDNDEDDE
TEGLIPLLTEKFPNRLPSPPLKPRTRRFSLPKISKIRPDAETQVQKYQAA
IQTPCSPVSNPLIHLEEGIKKIGKIVTKRNNNRADVLKKEDVMLPRKGYQ
KLSASPDKKSTFCRETIRLLHQNGNKESIQENIHRRYKTIYRFILKLHYR
IAIKSFKSKRHPFVNMQDLMEKNAMSHVEMLANIKGMRETINNLQQELLE
LRYTMEEIREGQSTKKKKNVQRIKSFSESDLTQLNRQRKFCNAIN Run BLAST on NCBI transcript from alignment at sc0000050:379767..383104 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005099 ID=TCONS_00005099|Name=TCONS_00005099|organism=Clytia hemisphaerica|type=transcript|length=3338bp|location=Sequence derived from alignment at sc0000050:379767..383104 (Clytia hemisphaerica)
CAAGCCCAAAACAAAATCAGCAAGTGGGCAAAACGTAAAAAAGGACTAAA
AATGATTACTTTTTCTTCTCTTTGGGTATATAATTTAGTGAAAAAGGTAG
AAAAACAACTATAGACATAATAATAGAGAAAATAGTGATTCTATTAGGGA
CGGAGAAAGACTCAAAGACGATTAAAACGTTATTATTATCGAGGAAATAT
CTCTATCCCATTAGCGGAAAGGTTGAGATTATCAATAGAAAATTTCATCT
TCAACACTGGGAAATGTAACATATAAAAAGCAGGAATCCATGACATTCTG
atcaaaattagaagaggaaGGGCAACATACGGAGATAACGGAAGGATAAC
TCTACATGTCACTTCACAGTAGGGTGAAGTCTTCATTAGAAACTTAACGG
GGAGAATTTCCAGATTCAGTCAACACCCTGTGAAAACATAACACCGTGGT
AAACATTTGATCAAACAGCATATATAAGGATAAATTGTTTCTCAGAAAAT
TCTGGAAGATGGAGAAAAAGGCATCTCTTCTTGAATATGAGGAAGAACAA
TTACCTCTAAACTATCGAGTCATGAAAAAATGGATGTTTTGCTTGCTGGA
GCGCCCAAATACGAAATGGGCGGTCATGTATCATTCAATATCGCTTTTAC
TGATAACTGGTAGCCTTATAGTTGGTGTACTGCATACGATTGAAAGTCTT
GAAAAAGCGTTGCATGGTGTTGTTATCaagttcgaaatttttttattagt
ttGGTTTTCGTTAGAATTCGCATTCCGATTATGGTCGTGTGGTTANCGAA
ATGTTTTTATTAGTTTGGTTTTCGTTAGAATTCGCATTCCGATTATGGTC
GTGTGGTTATATCTCAAGATATCAAGGTATTAAAGGTCGACTCAACTTTT
TGATGTCTCTATATATGATGATtgatatttttgtgattttatcaACGGCT
ATCACACTGCTAATGCAAGTCAATGGTAACTCATTTGCAACCATTCTTCG
TGTAACTCGATTCATGCAAGTTTTCCGTATACTGAGAGTAGACCGGCAAC
GTGGAGATATACGGACAATGGGAAACGTTGTACGGAAGCACTGCAAAGAA
TTAATCACTGTATATTTTGTAGGATTTGTACTGATGTTTTCGGCTACCTA
TTTGGTATACTTATGTGAGAAACATATCAGTCAAAATGATGACAAACTTA
GAGAGGAGGTATCCATTAATAATATGGCGGACGGACTCTATTGGGCTGCC
ATTACGGTCACTTCAGTAGGATATGGTGATTTTGCTCCCGTAACTTGGGC
TGGCAAACTCTTCTGCGCATTTTTCGCTTTGATCGGATGTGCCTTCTTCT
CTTTACCGGCCGGCATTTTGGGTACGGGATTCGCACtgcaacaaaagaaa
gaaaaacgttACATTAAAGTACGGAATCCTGCTGCTTATCTTATTCAAAC
AATGTGGCGAAATTATGCTTTGCAAAAAGGTAATGATAAGTTTGAAGCAA
CTTGGaactttcttttatcaaaacttCGTGACAATGATGAGGATGATGAA
ACAGAGGGGTTGATTCCTTTGCTAACTGAAAAATTTCCGAACCGTTTACC
TTCACCACCCCTAAAGCCACGCACGCGTCGATTCTCTTTACCCAAAATCT
CCAAAATACGACCAGATGCAGAAACGCAAGTTCAGAAATATCAAGCCGCT
ATACAAACACCGTGTTCACCAGTTTCGAATCCGTTAATCCATTTAGAAGA
AGGAATCaagaaaatcgggaaaattgtCACGAAACGGAATAATAACCGTG
CAGATGTTTTGAAGAAAGAAGATGTCATGTTGCCGAGAAAAGgatatcaa
aaattatcagcATCACCGGACAAGAAATCAACCTTCTGCCGAGAGACCAT
TAGGCTACTTCATCAAAATGGTAATAAAGAAAGCATACAGGAGAACATAC
ATCGACGATATAAGACGATCTATCGTTTCATCCTTAAATTACACTATAGA
ATTGCAATCAAATCGTTCAAAAGTAAGAGACATCCATTCGTTAATATGCA
AGATCTGATGGAAAAGAATGCAATGTCACACGTGGAGATGTTAGCCAACA
TTAAAGGAATGAGAGAAACAATCAATAATCTGCAACAAGAGCTTTTAGAG
CTAAGATACACAATGGAAGAGATCCGAGAGGGACAatcgacaaaaaagaa
aaagaatgtaCAAAGGATCAAATCATTTAGTGAATCTGATTTGACCCAAT
TAAATAGGCAGCGAAAATTTTGCAATGCTATAAACTAAGTATAACCTTTT
TTTTGTTTACCCACGTCTTTCGATAAGGGGAGGGCATTGAGATTCTAAGC
CGTGGTGCATAGAAATTCGAGACGAAATTGCAATTCCGGACaaaaaggtt
gtagacttttcaaaaatgcatgaaaaatttcaaaataagctcTGAAAAAC
CATTTTTACCAGGaccaatgttgtttttattgtatttgaaGAGTTTGGGT
AACAATTCCATATGCCAAATTCACTCGACATTGAAGGAAATGAATTTTTG
CAAAGTCTTCAGGCTATTTGTCTGAGATTGAAGATTGAAGGTTCAATGAG
TTTTgctcttcaactttttcgagaAGACATCTATTAGACCATTATTATTG
AGATGGTTTGATCAATTATAGACAACTTTTCAGAGCTCTCTGGTGCACCC
ACCACATGTGTGGCTGAAGTTCacccattttcagtcattttcagtctttg
gaagtctaaaaaccaCAAGGACTGCTAACAAGCCTGTAGGTGTCTTCTGC
TAAATAACCACTTATGGTTCATTTGGGGGAACTTCCCAGGTTTCAAAAAG
GCTTTTCTTGGCACTATAttgaagaatttttgaaaaatttacagATCTTT
TGCCCGAGATTGCGGCCGTTAAAATTAGAtgtatacttacttacttactg
caCGATTTAACGTCCGTGGTTCCCAGCATCTGGGGTTGGACGCAATATGC
ATAATATCTATCTTGTGAAGCAAATAAACACTTATTTTCTAGTCTTTCGC
GCCTAATTGGGAGAACTAATTGTAAGGGActagctggagtttttacaagc
tcttatttgatttggttggtcgttaaccagtaattattactttttctaaa
gaacgcgtcatctctatcacttcaaatgaccaattagtgaagtatcttat
aaaaactccagctcattcCAATTGTAAGGGATATAATATACAGCAGGGTC
TGTACTCTGGAGGTAACATGATTTATTACAGGGGGTAATATTACGGTCAT
TTCATAAATTTGCCCTATcaaagattttgtaatttttg Coding sequence (CDS) from alignment at sc0000050:379767..383104 >TCONS_00005099 ID=TCONS_00005099|Name=TCONS_00005099|organism=Clytia hemisphaerica|type=CDS|length=1488bp|location=Sequence derived from alignment at sc0000050:379767..383104 (Clytia hemisphaerica)
ATGTTTTTATTAGTTTGGTTTTCGTTAGAATTCGCATTCCGATTATGGTC
GTGTGGTTATATCTCAAGATATCAAGGTATTAAAGGTCGACTCAACTTTT
TGATGTCTCTATATATGATGATtgatatttttgtgattttatcaACGGCT
ATCACACTGCTAATGCAAGTCAATGGTAACTCATTTGCAACCATTCTTCG
TGTAACTCGATTCATGCAAGTTTTCCGTATACTGAGAGTAGACCGGCAAC
GTGGAGATATACGGACAATGGGAAACGTTGTACGGAAGCACTGCAAAGAA
TTAATCACTGTATATTTTGTAGGATTTGTACTGATGTTTTCGGCTACCTA
TTTGGTATACTTATGTGAGAAACATATCAGTCAAAATGATGACAAACTTA
GAGAGGAGGTATCCATTAATAATATGGCGGACGGACTCTATTGGGCTGCC
ATTACGGTCACTTCAGTAGGATATGGTGATTTTGCTCCCGTAACTTGGGC
TGGCAAACTCTTCTGCGCATTTTTCGCTTTGATCGGATGTGCCTTCTTCT
CTTTACCGGCCGGCATTTTGGGTACGGGATTCGCACtgcaacaaaagaaa
gaaaaacgttACATTAAAGTACGGAATCCTGCTGCTTATCTTATTCAAAC
AATGTGGCGAAATTATGCTTTGCAAAAAGGTAATGATAAGTTTGAAGCAA
CTTGGaactttcttttatcaaaacttCGTGACAATGATGAGGATGATGAA
ACAGAGGGGTTGATTCCTTTGCTAACTGAAAAATTTCCGAACCGTTTACC
TTCACCACCCCTAAAGCCACGCACGCGTCGATTCTCTTTACCCAAAATCT
CCAAAATACGACCAGATGCAGAAACGCAAGTTCAGAAATATCAAGCCGCT
ATACAAACACCGTGTTCACCAGTTTCGAATCCGTTAATCCATTTAGAAGA
AGGAATCaagaaaatcgggaaaattgtCACGAAACGGAATAATAACCGTG
CAGATGTTTTGAAGAAAGAAGATGTCATGTTGCCGAGAAAAGgatatcaa
aaattatcagcATCACCGGACAAGAAATCAACCTTCTGCCGAGAGACCAT
TAGGCTACTTCATCAAAATGGTAATAAAGAAAGCATACAGGAGAACATAC
ATCGACGATATAAGACGATCTATCGTTTCATCCTTAAATTACACTATAGA
ATTGCAATCAAATCGTTCAAAAGTAAGAGACATCCATTCGTTAATATGCA
AGATCTGATGGAAAAGAATGCAATGTCACACGTGGAGATGTTAGCCAACA
TTAAAGGAATGAGAGAAACAATCAATAATCTGCAACAAGAGCTTTTAGAG
CTAAGATACACAATGGAAGAGATCCGAGAGGGACAatcgacaaaaaagaa
aaagaatgtaCAAAGGATCAAATCATTTAGTGAATCTGATTTGACCCAAT
TAAATAGGCAGCGAAAATTTTGCAATGCTATAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005099-exon-sc0000050-1491911889:379767..383104 | TCONS_00005099-exon-sc0000050-1491911889:379767..383104 | Clytia hemisphaerica | exon |
| TCONS_00005099-exon-sc0000050-1510915933:379767..383104 | TCONS_00005099-exon-sc0000050-1510915933:379767..383104 | Clytia hemisphaerica | exon |
| TCONS_00005099-exon-sc0000050-1575043694:379767..383104 | TCONS_00005099-exon-sc0000050-1575043694:379767..383104 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:379767..383104 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005216 | ion channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
| GO:0008076 | voltage-gated potassium channel complex |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
BLAST of TCONS_00005099 vs. Swiss-Prot (Human)
Match: KCNQ4 (Potassium voltage-gated channel subfamily KQT member 4 OS=Homo sapiens GN=KCNQ4 PE=1 SV=2) HSP 1 Score: 223.787 bits (569), Expect = 2.915e-61 Identity = 144/478 (30.13%), Postives = 244/478 (51.05%), Query Frame = -3
Query: 1207 VVXEMFLLVWFSLEFAFRLWSCGYISRYQGIKGRLNFLMSLYMMIDIFVILSTAITLLMQVNGNSFAT-ILRVTRFMQVFRILRVDRQRGDIRTMGNVVRKHCKELITVYFVGFVLMFSATYLVYLCEKHISQNDDKLREEVSINNMADGLYWAAITVTSVGYGDFAPVTWAGKLFCAFFALIGCAFFSLPAGILGTGFAL---QQKKEKRYIKVRNPAAYLIQTMWRNYALQKGNDKFEATWNFL---------LSKLRDNDEDDETEGLIPLLTEK--FPNRLPS--PPL----KPRTRRFSLPKISKIRPDAETQVQKYQAAIQTPCSPVSNPLIHLEEGIKKIGKIVTKRN-------NNRADVLKKEDVMLPRKGYQKLSAS--PDKKSTFCRETIRLLHQNGNKESIQENIHRRYKTIYRFILKLHYRIAIKSFKSKRHPFVNMQDLMEKNAMSHVEMLANIKGMRETINNL 2550
++ E ++V F LE+ R+WS G RY+G +GR F + +ID V +++ + GN FAT LR RF+Q+ R++R+DR+ G + +G+VV H KELIT +++GF+++ A++LVYL EK N D ++ AD L+W IT+T++GYGD P TW G++ A FAL+G +FF+LPAGILG+GFAL +Q ++K + K R PAA LIQ WR Y+ ATW + L+ L ++ + GL PL + P+ PS PP+ +P + F + S++ ++ Q ++ P + +++G+ + N+R + + PR + + ++KS C T+ ++I KT+ R I L + +A + FK P+ +++D++E+ + H++ML IK ++ ++ +
Sbjct: 133 LILEFVMIVVFGLEYIVRVWSAGCCCRYRGWQGRFRFARKPFCVIDFIVFVASVAVIAAGTQGNIFATSALRSMRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFASFLVYLAEK--DANSD-------FSSYADSLWWGTITLTTIGYGDKTPHTWLGRVLAAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRMPAANLIQAAWRLYSTDMSRAYLTATWYYYDSILPSFRELALLFEHVQRARNGGLRPLEVRRAPVPDGAPSRYPPVATCHRPGSTSFCPGESSRMGIKDRIRMGSSQRRTGPSKQHLAPPTMPTSPSSEQVGEATSPTKVQKSWSFNDRTR-FRASLRLKPRTSAEDAPSEEVAEEKSYQCELTV-------------DDIMPAVKTVIRSIRILKFLVAKRKFKETLRPY-DVKDVIEQYSAGHLDMLGRIKSLQTRVDQI 586
The following BLAST results are available for this feature:
|
