TCONS_00005058-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005058-protein
Unique NameTCONS_00005058-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length123

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005058-protein ID=TCONS_00005058-protein|Name=TCONS_00005058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
DTLQPPHGSRLKCTICRRGFNSRSNLRSHMRIHTLEKPFHCKYCKKAFSQ
SSTLRNHVRLHTGERPYSCSVCKMAYSQLAGLRAHQKSARHRPHAALLNR
TFKPITSTQRFGNSGMKMNIFDG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002865XLOC_002865Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005058TCONS_00005058Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 67..91
e-value: 0.17
score: 21.0
coord: 39..61
e-value: 0.0061
score: 25.8
coord: 11..33
e-value: 9.3E-5
score: 31.8
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 13..33
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 69..91
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 41..61
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 67..96
score: 9.162
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 11..38
score: 14.981
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 39..66
score: 16.685
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 11..48
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 36..85
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 67..91
e-value: 0.0061
score: 16.9
coord: 39..61
e-value: 3.5E-5
score: 23.9
coord: 12..33
e-value: 2.9E-6
score: 27.3
NoneNo IPR availableGENE3D3.30.160.60coord: 11..44
e-value: 1.2E-17
score: 63.5
NoneNo IPR availableGENE3D3.30.160.60coord: 45..58
e-value: 1.6E-15
score: 56.4
NoneNo IPR availableGENE3D3.30.160.60coord: 73..110
e-value: 1.3E-8
score: 34.1
NoneNo IPR availableGENE3D2.20.25.10coord: 59..72
e-value: 6.1E-5
score: 22.5

Blast
[Close]
BLAST of TCONS_00005058-protein vs. Swiss-Prot (Human)
Match: PRD12 (PR domain zinc finger protein 12 OS=Homo sapiens GN=PRDM12 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.664e-47
Identity = 73/98 (74.49%), Postives = 82/98 (83.67%), Query Frame = 0 
Query:    1 DTLQPPHGSRLKCTICRRGFNSRSNLRSHMRIHTLEKPFHCKYCKKAFSQSSTLRNHVRLHTGERPYSCSVCKMAYSQLAGLRAHQKSARHRPHAALL 98
            D+   P G R++C IC RGFNSRSNLRSHMRIHTL+KPF C++C + FSQSSTLRNHVRLHTGERPY C VC+ AYSQLAGLRAHQKSARHRP +  L
Sbjct:  234 DSAAGPAG-RMRCVICHRGFNSRSNLRSHMRIHTLDKPFVCRFCNRRFSQSSTLRNHVRLHTGERPYKCQVCQSAYSQLAGLRAHQKSARHRPPSTAL 330
The following BLAST results are available for this feature:
BLAST of TCONS_00005058-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRD124.664e-4774.49PR domain zinc finger protein 12 OS=Homo sapiens G... [more]
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