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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005058 ID=TCONS_00005058|Name=TCONS_00005058|organism=Clytia hemisphaerica|type=transcript|length=975bp
CAGATACTCTACAGCCTCCACATGGATCTCGGTTGAAATGTACAATCTGT
CGACGTGGTTTTAACTCACGTAGCAATCTACGTTCGCACATGCGTATTCA
CACATTGGAAAAACCTTTCCATTGTAAATATTGCAAGAAAGCTTTCAGTC
AATCATCAACTTTACGAAATCACGTTCGACTCCACACTGGAGAAAGACCG
TACAGTTGTAGTGTGTGCAAGATGGCGTATTCACAACTTGCCGGTCTAAG
AGCACATCAAAAGAGCGCAAGACATCGTCCACATGCAGCCTTGCTCAATA
GAACATTCAAACCAATCACTTCTACGCAACGATTTGGTAATAGTGGTATG
AAAATGAACATTTTTGATGGATGATGGATGAAAAGAGAGAGTGTACatcc
tagttaactaagcccgtgtATTCACAAGGCTAAGACACATAGATTaagca
atatagcgtttttggTGCTTTAAAGATTTGTTCAgttcacaacttaccat
cagatttatcctaactgaatcaaactagcttagatttctaggctagagAT
TGCACACCGAAAACAGCGTTTTCACTAATGGgttcgtgctccttatatat
atctggggttttgtagaggtcagACTACGTTTGTCTAAATTTTTTGCCGA
TCCTAATTGATAAATGATGTATAAATGTCCCGTTATTTTTAGTATAAGCA
TAACACATAGTCAGcgaaatttcaattctttttgaaataaaaacatcgTA
CTTGCGTTTAGTTTGTATTCAAAATCGATGAAAATATGCCTCTGATCCCc
agggaaaaatgaaaattagtcCATACAACCGGACAATTGTAACGAAATCC
AATCTTCAATTTAGGATATGTTACATCTCCTAAACCCCCTTTTGAGACCT
AGAGAGGGCTTTCAGCTATTTTGTATATGTAAATATTTCGTGAATAATTA
ATGTATGGTTAGGATATGATcacgg Run BLAST on NCBI protein sequence of TCONS_00005058-protein >TCONS_00005058-protein ID=TCONS_00005058-protein|Name=TCONS_00005058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
DTLQPPHGSRLKCTICRRGFNSRSNLRSHMRIHTLEKPFHCKYCKKAFSQ
SSTLRNHVRLHTGERPYSCSVCKMAYSQLAGLRAHQKSARHRPHAALLNR
TFKPITSTQRFGNSGMKMNIFDG Run BLAST on NCBI transcript from alignment at sc0000050:667486..668927- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005058 ID=TCONS_00005058|Name=TCONS_00005058|organism=Clytia hemisphaerica|type=transcript|length=1442bp|location=Sequence derived from alignment at sc0000050:667486..668927- (Clytia hemisphaerica)
CAGATACTCTACAGCCTCCACATGGATCTCGGTTGAAATGTACAATCTGT
CGACGTGGTTTTAACTCACGTAGCAATCTACGTTCGCACATGCGTATTCA
CACATTGGAAAAACCTTTCCATTGTAAATATTGCAAGAAAGCTTTCAGTC
AATCATCAACTTTACGAAATCACGTTCGACTCCACACTGGAGAAAGACCG
TACAGGTATCATATTTTGCTTTACTTACTTTATATTAGATAATAATGCAG
TTAGGACCAGCTAAATAATTCGTTCTTCTCAATATTAGCGAGATTAAGCA
AGGGTTCATTTAGACCGTTCAATGCGATATCGTAGGCCTATACATAAGAT
TTCACTTGCGTAGTTTACTTTGGCAAGTTATGTACAGGCCTACGGCATCG
CACTTTACAGTCAAAATAAACCTGTGCTTAACCTCGCTATTCATTTAAGC
ACGACTTACAGACGACCATTTTGAAGAAAAGATATGACTATAAGAAATCT
CAAATTTTCTTACATACACGTATCTCATGTTTAAATTCTTCGAAAAAGTT
TTTTCGATCAGAAATTACAAACCTTAATAGTTTTGATTTTGAAGAATAAG
TAGCGAGATTACCTTTAGGTTGAATTTAACCAATCGTTTATTTTTATAGT
CGAATCCTCTCTCTTTTTACAGTTGTAGTGTGTGCAAGATGGCGTATTCA
CAACTTGCCGGTCTAAGAGCACATCAAAAGAGCGCAAGACATCGTCCACA
TGCAGCCTTGCTCAATAGAACATTCAAACCAATCACTTCTACGCAACGAT
TTGGTAATAGTGGTATGAAAATGAACATTTTTGATGGATGATGGATGAAA
AGAGAGAGTGTACATCCTAGTTAACTAAGCCCGTGTATTCACAAGGCTAA
GACACATAGATTAAGCAATATAGCGTTTTTGGTGCTTTAAAGATTTGTTC
AGTTCACAACTTACCATCAGATTTATCCTAACTGAATCAAACTAGCTTAG
ATTTCTAGGCTAGAGATTGCACACCGAAAACAGCGTTTTCACTAATGGGT
TCGTGCTCCTTATATATATCTGGGGTTTTGTAGAGGTCAGACTACGTTTG
TCTAAATTTTTTGCCGATCCTAATTGATAAATGATGTATAAATGTCCCGT
TATTTTTAGTATAAGCATAACACATAGTCAGCGAAATTTCAATTCTTTTT
GAAATAAAAACATCGTACTTGCGTTTAGTTTGTATTCAAAATCGATGAAA
ATATGCCTCTGATCCCCAGGGAAAAATGAAAATTAGTCCATACAACCGGA
CAATTGTAACGAAATCCAATCTTCAATTTAGGATATGTTACATCTCCTAA
ACCCCCTTTTGAGACCTAGAGAGGGCTTTCAGCTATTTTGTATATGTAAA
TATTTCGTGAATAATTAATGTATGGTTAGGATATGATCACGG Coding sequence (CDS) from alignment at sc0000050:667486..668927- >TCONS_00005058 ID=TCONS_00005058|Name=TCONS_00005058|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0000050:667486..668927- (Clytia hemisphaerica)
TTGTAGTGTGTGCAAGATGGCGTATTCACAACTTGCCGGTCTAAGAGCAC
ATCAAAAGAGCGCAAGACATCGTCCACATGCAGCCTTGCTCAATAGAACA
TTCAAACCAATCACTTCTACGCAACGATTTGGTAATAGTGGTATGAAAAT
GAACATTTTTGATGGATGAGATACTCTACAGCCTCCACATGGATCTCGGT
TGAAATGTACAATCTGTCGACGTGGTTTTAACTCACGTAGCAATCTACGT
TCGCACATGCGTATTCACACATTGGAAAAACCTTTCCATTGTAAATATTG
CAAGAAAGCTTTCAGTCAATCATCAACTTTACGAAATCACGTTCGACTCC
ACACTGGAGAAAGACCGTACAGTTGTAGTGTGTGCAAGATGGCGTATTCA
CAACTTGCCGGTCTAAGAGCACATCAAAAGAGCGCAAGACATCGTCCACA
TGCAGCCTTGCTCAATAGAACATTCAAACCAATCACTTCTACGCAACGAT
TTGGTAATAGTGGTATGAAAATGAACATTTTTGATGGATGAGATACTCTA
CAGCCTCCACATGGATCTCGGTTGAAATGTACAATCTGTCGACGTGGTTT
TAACTCACGTAGCAATCTACGTTCGCACATGCGTATTCACACATTGGAAA
AACCTTTCCATTGTAAATATTGCAAGAAAGCTTTCAGTCAATCATCAACT
TTACGAAATCACGTTCGACTCCACACTGGAGAAAGACCGTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005058-exon-sc0000050-1575043694:668723..668927 | TCONS_00005058-exon-sc0000050-1575043694:668723..668927 | Clytia hemisphaerica | exon |
| TCONS_00005058-exon-sc0000050-1575043694:667486..668255 | TCONS_00005058-exon-sc0000050-1575043694:667486..668255 | Clytia hemisphaerica | exon |
| TCONS_00005058-exon-sc0000050-1510915933:668723..668927 | TCONS_00005058-exon-sc0000050-1510915933:668723..668927 | Clytia hemisphaerica | exon |
| TCONS_00005058-exon-sc0000050-1510915933:667486..668255 | TCONS_00005058-exon-sc0000050-1510915933:667486..668255 | Clytia hemisphaerica | exon |
| TCONS_00005058-exon-sc0000050-1491911889:668723..668927 | TCONS_00005058-exon-sc0000050-1491911889:668723..668927 | Clytia hemisphaerica | exon |
| TCONS_00005058-exon-sc0000050-1491911889:667486..668255 | TCONS_00005058-exon-sc0000050-1491911889:667486..668255 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:667486..668927 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00005058 vs. Swiss-Prot (Human)
Match: PRD12 (PR domain zinc finger protein 12 OS=Homo sapiens GN=PRDM12 PE=1 SV=2) HSP 1 Score: 154.451 bits (389), Expect = 5.457e-43 Identity = 73/98 (74.49%), Postives = 82/98 (83.67%), Query Frame = 3
Query: 3 DTLQPPHGSRLKCTICRRGFNSRSNLRSHMRIHTLEKPFHCKYCKKAFSQSSTLRNHVRLHTGERPYSCSVCKMAYSQLAGLRAHQKSARHRPHAALL 296
D+ P G R++C IC RGFNSRSNLRSHMRIHTL+KPF C++C + FSQSSTLRNHVRLHTGERPY C VC+ AYSQLAGLRAHQKSARHRP + L
Sbjct: 234 DSAAGPAG-RMRCVICHRGFNSRSNLRSHMRIHTLDKPFVCRFCNRRFSQSSTLRNHVRLHTGERPYKCQVCQSAYSQLAGLRAHQKSARHRPPSTAL 330
The following BLAST results are available for this feature:
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