TCONS_00004573-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004573-protein
Unique NameTCONS_00004573-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004573-protein ID=TCONS_00004573-protein|Name=TCONS_00004573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp
MGWKKKAGIFLLPFALYFGYKLCRDNFVLLVLIPTLLSPRLPFETYKELN
PDITDFATSDDQIVDEYDFVVIGAGSAGAVVANRLSENKSWKILLLEAGG
AETILTEVPGFAYEAIVSGSSWNYKAEKHEDNFTSVNQANGQVLWPRGKS
LGGTSAINGLVYTRGNKNDYNSWEEQGNPGWAYEEILPYFKKSEGQTKKD
LMGSKYHSTEGPLTVESPMVYPEMMKDTEEACSTLIGRNTDYNGEKQTGC
FFYQLTRRDGLRCSTAKAFLKPKKSNLHVSPFSHVQKILIDPETKTAKGV
VYKKNGKSMTVKAKKEVILSAGAVASPQILMLSGVGPKEELEKHGIPIIK
ELQVGYNLQDHVNYFDYILLNDSSRDFHMAEVLNYDTFKMFTNEREGPLA
QSLVVGGFLPLTTKAKQIDWPEIQIHIFAALTGDFYGFKQVFNVDDKYWK
YLVKEMDGKVGMSILYCVLRPKSRGRIKLRSVNAEDHPLIIPNYFDHPED
LREFVEGMKFTKKLAAAMKHLNASTYRGKEPGCEQHELDSDDYLGCIAKR
GATTTYHPVGTCKMGPHTDDQAVVDSTLKVYGIKGLRVIDASIMPTIVSG
NTNAPTIMIAEKAADIIKEDWKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002567XLOC_002567Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004573TCONS_00004573Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000172GMC_OxRdtase_N
IPR012132GMC_OxRdtase
IPR007867GMC_OxRtase_C
IPR023753FAD/NAD-binding_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPFAMPF00732GMC_oxred_Ncoord: 67..362
e-value: 1.9E-72
score: 244.0
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPROSITEPS00624GMC_OXRED_2coord: 322..336
IPR000172Glucose-methanol-choline oxidoreductase, N-terminalPROSITEPS00623GMC_OXRED_1coord: 148..171
IPR012132Glucose-methanol-choline oxidoreductasePIRSFPIRSF000137Alcohol_oxidasecoord: 44..623
e-value: 1.5E-146
score: 487.6
NoneNo IPR availableGENE3D4.10.450.10coord: 101..170
e-value: 1.7E-18
score: 65.5
NoneNo IPR availableGENE3D3.30.560.10coord: 171..576
e-value: 2.0E-97
score: 325.9
NoneNo IPR availableSUPERFAMILY54373FAD-linked reductases, C-terminal domaincoord: 357..561
IPR007867Glucose-methanol-choline oxidoreductase, C-terminalPFAMPF05199GMC_oxred_Ccoord: 471..613
e-value: 7.7E-44
score: 149.6
IPR023753FAD/NAD(P)-binding domainSUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 560..622
coord: 65..355

Blast
[Close]
BLAST of TCONS_00004573-protein vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 315.079 bits (806), Expect = 1.954e-99
Identity = 216/589 (36.67%), Postives = 313/589 (53.14%), Query Frame = 0 
Query:   56 FATSDDQIVDEYDFVVIGAGSAGAVVANRLSENKSWKILLLEAGGAETILTEVPGFAYE-----AIVSG-----SSWNYKAEKHEDNFTSVNQANGQVL-WPRGKSLGGTSAINGLVYTRGNKNDYNSWEEQGNPGWAYEEILPYFKKSEGQTKKDLMGSKYHSTEGPLTVE----SPMVYPEMMKDTEEACSTLIGRNTDYNGEKQTGCFFYQLTRRDGLRCSTAKAFLKP--KKSNLHVSPFSHVQKILIDPETKTAKGVVYKKNGKSMTVKAKKEVILSAGAVASPQILMLSGVGPKEELEKHGIPIIKELQ-VGYNLQDHVNYF------DYILLNDSSRDFHMAEVLNYDTFKMFTNEREGPLAQSLVVGGFLPLTTKAKQIDWPEIQIHIFAALTGDFYGFKQVFNVDDKYWKYLVKEMDGKVGMSILYCVLRPKSRGRIKLRSVNAEDHPLIIPNYFDHPEDLREFVEGMKFTKKLAAAMKHLNASTYRGKE--PGCEQHELDSDDYLGCIAKRGATTTYHPVGTCKMGPHTDDQAVVDSTLKVYGIKGLRVIDASIMPTIVSGNTNAPTIMIAEKAADIIK 618
             A++  +  DEY +VV+GAGSAG V+A RL+E+ + ++LLLEAG  + +L      +++     A+V+       +W Y  E            +G+VL WPRG+  GG+S++N +VY RG+  DY  W+ QG  GW Y   LPYF+K++G    +L  S+Y   +GPL V     +  ++   ++ T++A   L     D NG +Q G  +  +T  +G R S A A+L P   ++NL     + V ++L   E   A GV Y KNG+S    A KEVILS GA+ SPQ+LMLSG+G  ++L+K GIP++  L  VG NLQDH+  +        I L+ + +       +  +    FT   EG  A  L  GGF+        +  P+IQ H   +   D     +V    + Y               +    +R  S G +KLRS N +DHP+I PNY     D+ +F   +K T+++ A       + +RGKE  PG     + SD  +    +  A + YHP  TCKMG  +D  AVVD   +V G++ LRV+DASIMP++VSGN NAPTIMIAEKAADIIK
Sbjct:   30 LASAGSESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAG-PKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRG-------LDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGH---ELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPL---TEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLF--EGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKV-CIGLEWLWKFTG--EGATAH-LETGGFI---RSQPGVPHPDIQFHFLPSQVID---HGRVPTQQEAY--------------QVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEA---LAPFRGKELQPGS---HIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIK 572
The following BLAST results are available for this feature:
BLAST of TCONS_00004573-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHDH1.954e-9936.67Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
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