TCONS_00004573 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004573
Unique NameTCONS_00004573
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004573 ID=TCONS_00004573|Name=TCONS_00004573|organism=Clytia hemisphaerica|type=transcript|length=2818bp
GTTTGTTTGTATACAAAACACACCACTTGTGTCAGAAATTGTAAAAGTta
caatcttttttttcatgGACTAAGTACATAAACTCTGTGCTTTCAACATG
CAATTAATTTTGCGATAAGATTCCGTACGTTCAGCAATTATCTTTGCGGT
GGAGAGTTAATTAGAGCTCCTTAAGTGTGTAATATCaatctttatttgaa
aaaattccttgTATTACTTTCATAAGGACTTTGTGTGCACGATGGGTTGG
AAGAAGAAAGCTGGCATCTTCCTGTTGCCCTTTGCATTATATTTTGGATA
TAAACTATGTAGGGATAATTTTGTGTTATTAGTTTTGATACCGACATTAC
TTTCACCACGTCTTCCCTTCGAAACATACAAAGAACTAAATCCTGACATT
ACAGACTTTGCAACAAGCGATGATCAAATAGTTGATGAATATGATTTTGT
GGTTATTGGTGCAGGATCTGCAGGAGCTGTTGTTGCCAATCGTTTAAGTG
AAAACAAATCATGGAAAATTCTTCTACTCGAAGCTGGTGGAGCTGAAACT
ATTTTAACTGAAGTTCCTGGATTCGCATATGAAGCAATTGTTTCAGGATC
CAGTTGGAATTATAAAGCAGAAAAGCACGAGGATAACTTTACTTCGGTAA
ATCAGGCTAACGGACAAGTTTTATGGCCTAGAGGGAAAAGTCTTGGAGGC
ACAAGTGCAATTAATGGTTTGGTGTACACAAGAGGAAACAAGAATGATTA
TAATTCGTGGGAGGAACAAGGTAATCCAGGATGGGCTTACGAAGAAATTC
TGCCATATTTCAAGAAATCAGAAGGCCAGACGAAAAAGGATTTAATGGGA
TCAAAGTATCACTCTACAGAAGGGCCATTAACGGTTGAAAGTCCAATGGT
GTATCCAGAAATGATGAAAGATACTGAAGAAGCTTGCTCAACGCTGATTG
GTCGAAACACTGACTACAATGGAGAGAAGCAGACAGGCTGCTTCTTCTAC
CAATTAACAAGACGCGACGGTCTTCGATGCAGTACAGCCAAAGCTTTTCT
TAAACCCAAGAAATCAAATCTCCACGTCAGTCCATTTTCACATGTTCAGA
AGATTTTGATTGATCCTGAAACGAAAACAGCCAAAGGTGTTGTTTATAAG
AAGAATGGAAAATCCATGACAgtcaaagcaaaaaaagaagTTATCTTGTC
TGCTGGTGCTGTTGCTTCTCCCCAGATTTTAATGCTATCAGGAGTTGGAC
CAAAGGAGGAATTGGAGAAACATGGAATTCCGATCATCAAAGAACTTCAA
GTTGGATACAATTTACAAGACCATGTCAATTATTTTGATTATATCCTCTT
GAATGATAGCAGTCGCGATTTCCATATGGCTGAAGTGCTGAATTATGACA
CGTTCAAGATGTTCACAAATGAAAGAGAAGGTCCTCTCGCCCAATCATTA
GTTGTTGGTGGATTCTTACCCTTGACAACGAAAGCGAAACAAATTGACTG
GCCTGAAATACAAATACATATCTTCGCTGCACTGACAGGTGACTTTTATG
GCTTCAAACAAGTCTTCAATGTCGATGATAAGTATTGGAAATACCTGGTG
AAAGAGATGGATGGAAAAGTTGGCATGAGTATTCTGTATTGCGTTCTACG
ACCAAAAAGCAGAGGACGTATCAAGTTGAGAAGTGTCAATGCAGAAGACC
ATCCATTGATCATACCAAATTACTTCGACCACCCTGAAGATTTAAGAGAA
TTCGTTGAAGGGATGAAATTCACCAAGAAACTTGCAGCTGCTATGAAACA
TTTAAATGCTTCAACTTATCGCGGTAAAGAACCTGGGTGCGAGCAACATG
AGCTAGATTCTGATGACTACCTTGGATGCATTGCTAAGAGAGGAGCTACA
ACAACTTACCACCCAGTGGGTACGTGCAAGATGGGACCACATACTGATGA
TCAAGCAGTTGTAGATTCAACATTGAAAGTTTATGGTATCAAAGGATTAC
GTGTTATCGATGCATCAATCATGCCAACCATTGTCAGTGGAAATACTAAT
GCACCTACAATTATGATCGCTGAAAAAGCTGCTGATATCATCAAAGAGGA
CTGGAAAGAATGAagcagaatttttttcttctctgagAACCATACATTAT
Ccaagttttgttttttgatagattttgattatttacaaattataaattta
GTAAAATAAATATTCCCTATCTAgatgtaataaaattttaaatagtTCTA
TCTGTATGGATTTATTACTGGAAATATTGCATTGAAtaaatttcatcatt
aaaaTAATTATGTGTGATCAATAGATTATACTGTTATTGCTTTTCCAATA
CACGTCTACGAAGACACGCATCcaatgatttcatttttttttcacttttt
atttaacAACAATGTTacttttccttcgaaatttaATCAAGTTAATTCAA
AGGCGAATTTCAGTCGGAGATGTAAGCAAACAGTCTCCAAAACCACGCCT
AACCTCCTTTGGTTATTTGAATCTCCTCAATCCATGGTAAATATCCGGGA
AGCTATATCTccaatcaaccaatcaactCCATCTAAAAGTTTCTCACCAG
TCACAGCACTGCAACCAAGAATTTGCCAATGATGTGTTTTGATTTCATCA
AGTTCTAATACTTTTGCAATCTCATCAGCTTTCAAAGCTCCTGGCAAATC
TTGTTTATTGGCGAACACCAAAAGGGTTGCACCAGCAAGTCTCTAAAAAT
GCAAAAGTGAGAATTGAATACACTCCACTTCCTTTGAAAACCTTTAATGT
AGTAATTTATGATAtgta
Run BLAST on NCBI

protein sequence of TCONS_00004573-protein

>TCONS_00004573-protein ID=TCONS_00004573-protein|Name=TCONS_00004573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp
MGWKKKAGIFLLPFALYFGYKLCRDNFVLLVLIPTLLSPRLPFETYKELN
PDITDFATSDDQIVDEYDFVVIGAGSAGAVVANRLSENKSWKILLLEAGG
AETILTEVPGFAYEAIVSGSSWNYKAEKHEDNFTSVNQANGQVLWPRGKS
LGGTSAINGLVYTRGNKNDYNSWEEQGNPGWAYEEILPYFKKSEGQTKKD
LMGSKYHSTEGPLTVESPMVYPEMMKDTEEACSTLIGRNTDYNGEKQTGC
FFYQLTRRDGLRCSTAKAFLKPKKSNLHVSPFSHVQKILIDPETKTAKGV
VYKKNGKSMTVKAKKEVILSAGAVASPQILMLSGVGPKEELEKHGIPIIK
ELQVGYNLQDHVNYFDYILLNDSSRDFHMAEVLNYDTFKMFTNEREGPLA
QSLVVGGFLPLTTKAKQIDWPEIQIHIFAALTGDFYGFKQVFNVDDKYWK
YLVKEMDGKVGMSILYCVLRPKSRGRIKLRSVNAEDHPLIIPNYFDHPED
LREFVEGMKFTKKLAAAMKHLNASTYRGKEPGCEQHELDSDDYLGCIAKR
GATTTYHPVGTCKMGPHTDDQAVVDSTLKVYGIKGLRVIDASIMPTIVSG
NTNAPTIMIAEKAADIIKEDWKE
Run BLAST on NCBI

transcript from alignment at sc0000045:752972..757174-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004573 ID=TCONS_00004573|Name=TCONS_00004573|organism=Clytia hemisphaerica|type=transcript|length=4203bp|location=Sequence derived from alignment at sc0000045:752972..757174- (Clytia hemisphaerica)
GTTTGTTTGTATACAAAACACACCACTTGTGTCAGAAATTGTAAAAGTTA
CAATCTTTTTTTTCATGGACTAAGTACATAAACTCTGTGCTTTCAACATG
CAATTAATTTTGCGATAAGATTCCGTACGTTCAGCAATTATCTTTGCGGT
GGAGAGTTAATTAGAGCTCCTTAAGTGTGTAATATCAATCTTTATTTGAA
AAAATTCCTTGTATTACTTTCATAAGGACTTTGTGTGCACGATGGGTTGG
AAGAAGAAAGCTGGCATCTTCCTGTTGCCCTTTGCATTATATTTTGGATA
TAAACTATGTAGGGATAATTTTGTGTTATTAGTTTTGATACCGACATTAC
TTTCACCACGTCTTCCCTTCGAAACATACAAAGAACTAAATCCTGACATT
ACAGACTTTGCAACAAGCGATGATCAAATAGTTGATGAATATGATTTTGT
GGTTATTGGTGCAGGATCTGCAGGAGCTGTTGTTGCCAATCGTTTAAGTG
AAAACAAATCATGGAAAATTCTTCTACTCGAAGCTGGTGGAGCTGAAACT
ATTTTAACTGAAGTTCCTGGATTCGCATATGAAGCAATTGTTTCAGGATC
CAGTTGGAATTATAAAGCAGAAAAGCACGAGGATAACTTTACTTCGGTAA
ATCAGGCTAACGGACAAGTTTTATGGCCTAGAGGGAAAAGTCTTGGAGGC
ACAAGTGCAATTAATGGTTTGGTGTACACAAGAGGAAACAAGAATGATTA
TAATTCGTGGGAGGAACAAGGTAATCCAGGATGGGCTTACGAAGAAATTC
TGCCATATTTCAAGAAATCAGAAGGCCAGACGAAAAAGGATTTAATGGGA
TCAAAGTATCACTCTACAGAAGGGCCATTAACGGTTGAAAGTCCAATGGT
GTATCCAGAAATGATGAAAGATACTGAAGAAGCTTGCTCAACGCTGATTG
GTCGAAACACTGACTACAATGGAGAGAAGCAGACAGGCTGCTTCTTCTAC
CAATTAACAAGACGCGACGGTCTTCGATGCAGTACAGCCAAAGCTTTTCT
TAAACCCAAGAAATCAAATCTCCACGTCAGTCCATTTTCACATGTTCAGA
AGATTTTGATTGATCCTGAAACGAAAACAGCCAAAGGTGTTGTTTATAAG
AAGAATGGAAAATCCATGACAGTCAAAGCAAAAAAAGAAGTTATCTTGTC
TGCTGGTGCTGTTGCTTCTCCCCAGGTAAATAATTTAGACATCAAACTTA
CTTTTAACTCAGTCAAACTTTTCTACATTAATGATTCCAAGATCTTGATA
TTTAAATCTGGAAAGGTTCTTTAGAACGTGGTAGATTGTAAATACTAATG
ATCTAACTTCGTGTTACAGATTTTAATGCTATCAGGAGTTGGACCAAAGG
AGGAATTGGAGAAACATGGAATTCCGATCATCAAAGAACTTCAAGTTGGA
TACAATTTACAAGACCATGTCAATTATTTTGATTATATCCTCTTGAATGA
TAGCAGTCGCGATTTCCATATGGCTGAGTAAGAAAGTTAATTCAGTTATA
ACAATTTCAATGGTGATTGTGCCACACTTCAGAATTGAAACGTAAAAAAA
CGTATAGACGGTATAATTGGACGTGGAGCATGCTTAGAGTGCTTTTTCTG
GCTATCTATACCTTGCCAAAGGCCGACTAAGCGGTCAGGCAAAGTCCCTT
AAAGAGTNGGAGTGCTTTTTCAGATTATCTATACCTTGCCAAAGGCCGAC
TAAGCGGTCAGGCAAAGTCCCTTCACCATCAGCCAAAGTACGCCCAAGTG
GGCCCAGGTTTTAAGCTCATAAGAGTATTTAAGGATATTTGTGCAAGGTT
TTGAAAAGAAAATTTGTGCCTTTTTCGTCAAGTTTTCAAGTAAACAATTT
CTGATCTTAGTTATTGCCATGCACGGCAAAGCATTATTAAAAAAAATAAT
AATAATTACTGTAACCTTAAGATTGTCTTTTTTCTACGTCGCAGAGTGCT
GAATTATGACACGTTCAAGATGTTCACAAATGAAAGAGAAGGTCCTCTCG
CCCAATCATTAGTTGTTGGTGGATTCTTACCCTTGACAACGAAAGCGAAA
CAAATTGACTGGCCTGAAATACAAATACATATCTTCGCTGCACTGACAGG
TGACTTTTATGGCTTCAAACAAGTCTTCAATGTCGATGATAAGTATTGGA
AATACCTGGTGAAAGAGATGGATGGAAAAGTTGGCATGAGTATTCTGTAT
TGCGTTCTACGACCAAAAAGCAGGTAACAGCCTCAAATGCTATAAAAGAT
CTATAAATTTTATCCCAAATTTTCGTCAAGAACTTATGATTTTTCTTCTT
ATCTACTATAATCGTATAAATTTTAGCGAGACTAATTTTAGCGTTTCAGC
GAGTTTTCCCTATTTTCGCTAAAACACGCCGAATCGCCAGATCGCTTAAA
TTTATCCGCGCGAAATTTCTGGTTATATTGCCTTGATACATTTTTATCAA
TAGGAAGGGTTTCAGTGCAAAGAAATGCTAGAAAACGAAAGCAATCAATA
ACGAGTATTCGCTAAAATTTATCCACGCGAAATTTTTTGAATTCGTGATT
CGCTAAAATAAATCCAAAAAAAATCAAGATTTTCCTGACTCGCTAATATA
CGTTAAAATAAGTCTCGCTAAAATTTCTACGACTAAAGTACTATCGCCAT
AAAAAAAACACATAAAATAAGCCAATTTGATAGAATACTTACTGTAAGTT
TAAGTGAACCAGAACATACTCAACTTTTCCAGAGGACGTATCAAGTTGAG
AAGTGTCAATGCAGAAGACCATCCATTGATCATACCAAATTACTTCGACC
ACCCTGAAGATTTAAGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAA
CTTGCAGCTGCTATGAAACATTTAAATGCTTCAACTTATCGCGGTAAAGA
ACCTGGGTGCGAGCAACATGAGCTAGGTGAGAATTGGAAGATCCAAAAAT
CAGTATTTTGTTGATCAAAATGTAAAGAATTAAGAAAAGTCAACCTTACA
TTGATGGTTAGAGAATCAAAGTTGACTATTGTGTATTGAATCTTCTTTTG
TTTGATGGCTTTCGTGAATTATACAATCTCCTGACCAACCTATGCTTCGA
TACTCTTTTCTAAATGTACCAAACCAACAAATTAAAGAGTTTAAGAATAA
GTATTTGAATCTTACAGTAATAACAATAAATCTGTTTTCAGATTCTGATG
ACTACCTTGGATGCATTGCTAAGAGAGGAGCTACAACAACTTACCACCCA
GTGGGTACGTGCAAGATGGGACCACATACTGATGATCAAGCAGTTGTAGA
TTCAACATTGAAAGTTTATGGTATCAAAGGATTACGTGTTATCGATGCAT
CAATCATGCCAACCATTGTCAGTGGAAATACTAATGCACCTACAATTATG
ATCGCTGAAAAAGCTGCTGATATCATCAAAGAGGACTGGAAAGAATGAAG
CAGAATTTTTTTCTTCTCTGAGAACCATACATTATCCAAGTTTTGTTTTT
TGATAGATTTTGATTATTTACAAATTATAAATTTAGTAAAATAAATATTC
CCTATCTAGATGTAATAAAATTTTAAATAGTTCTATCTGTATGGATTTAT
TACTGGAAATATTGCATTGAATAAATTTCATCATTAAAATAATTATGTGT
GATCAATAGATTATACTGTTATTGCTTTTCCAATACACGTCTACGAAGAC
ACGCATCCAATGATTTCATTTTTTTTTCACTTTTTATTTAACAACAATGT
TACTTTTCCTTCGAAATTTAATCAAGTTAATTCAAAGGCGAATTTCAGTC
GGAGATGTAAGCAAACAGTCTCCAAAACCACGCCTAACCTCCTTTGGTTA
TTTGAATCTCCTCAATCCATGGTAAATATCCGGGAAGCTATATCTCCAAT
CAACCAATCAACTCCATCTAAAAGTTTCTCACCAGTCACAGCACTGCAAC
CAAGAATTTGCCAATGATGTGTTTTGATTTCATCAAGTTCTAATACTTTT
GCAATCTCATCAGCTTTCAAAGCTCCTGGCAAATCTTGTTTATTGGCGAA
CACCAAAAGGGTTGCACCAGCAAGTCTCTAAAAATGCAAAAGTGAGAATT
GAATACACTCCACTTCCTTTGAAAACCTTTAATGTAGTAATTTATGATAT
GTA

Coding sequence (CDS) from alignment at sc0000045:752972..757174-

>TCONS_00004573 ID=TCONS_00004573|Name=TCONS_00004573|organism=Clytia hemisphaerica|type=CDS|length=9360bp|location=Sequence derived from alignment at sc0000045:752972..757174- (Clytia hemisphaerica)
ATTCTGATGACTACCTTGGATGCATTGCTAAGAGAGGAGCTACAACAACT
TACCACCCAGTGGGTACGTGCAAGATGGGACCACATACTGATGATCAAGC
AGTTGTAGATTCAACATTGAAAGTTTATGGTATCAAAGGATTACGTGTTA
TCGATGCATCAATCATGCCAACCATTGTCAGTGGAAATACTAATGCACCT
ACAATTATGATCGCTGAAAAAGCTGCTGATATCATCAAAGAGGACTGGAA
AGAATGAAGGACGTATCAAGTTGAGAAGTGTCAATGCAGAAGACCATCCA
TTGATCATACCAAATTACTTCGACCACCCTGAAGATTTAAGAGAATTCGT
TGAAGGGATGAAATTCACCAAGAAACTTGCAGCTGCTATGAAACATTTAA
ATGCTTCAACTTATCGCGGTAAAGAACCTGGGTGCGAGCAACATGAGCTA
GAGTGCTGAATTATGACACGTTCAAGATGTTCACAAATGAAAGAGAAGGT
CCTCTCGCCCAATCATTAGTTGTTGGTGGATTCTTACCCTTGACAACGAA
AGCGAAACAAATTGACTGGCCTGAAATACAAATACATATCTTCGCTGCAC
TGACAGGTGACTTTTATGGCTTCAAACAAGTCTTCAATGTCGATGATAAG
TATTGGAAATACCTGGTGAAAGAGATGGATGGAAAAGTTGGCATGAGTAT
TCTGTATTGCGTTCTACGACCAAAAAGCAGATTTTAATGCTATCAGGAGT
TGGACCAAAGGAGGAATTGGAGAAACATGGAATTCCGATCATCAAAGAAC
TTCAAGTTGGATACAATTTACAAGACCATGTCAATTATTTTGATTATATC
CTCTTGAATGATAGCAGTCGCGATTTCCATATGGCTGAATGGGTTGGAAG
AAGAAAGCTGGCATCTTCCTGTTGCCCTTTGCATTATATTTTGGATATAA
ACTATGTAGGGATAATTTTGTGTTATTAGTTTTGATACCGACATTACTTT
CACCACGTCTTCCCTTCGAAACATACAAAGAACTAAATCCTGACATTACA
GACTTTGCAACAAGCGATGATCAAATAGTTGATGAATATGATTTTGTGGT
TATTGGTGCAGGATCTGCAGGAGCTGTTGTTGCCAATCGTTTAAGTGAAA
ACAAATCATGGAAAATTCTTCTACTCGAAGCTGGTGGAGCTGAAACTATT
TTAACTGAAGTTCCTGGATTCGCATATGAAGCAATTGTTTCAGGATCCAG
TTGGAATTATAAAGCAGAAAAGCACGAGGATAACTTTACTTCGGTAAATC
AGGCTAACGGACAAGTTTTATGGCCTAGAGGGAAAAGTCTTGGAGGCACA
AGTGCAATTAATGGTTTGGTGTACACAAGAGGAAACAAGAATGATTATAA
TTCGTGGGAGGAACAAGGTAATCCAGGATGGGCTTACGAAGAAATTCTGC
CATATTTCAAGAAATCAGAAGGCCAGACGAAAAAGGATTTAATGGGATCA
AAGTATCACTCTACAGAAGGGCCATTAACGGTTGAAAGTCCAATGGTGTA
TCCAGAAATGATGAAAGATACTGAAGAAGCTTGCTCAACGCTGATTGGTC
GAAACACTGACTACAATGGAGAGAAGCAGACAGGCTGCTTCTTCTACCAA
TTAACAAGACGCGACGGTCTTCGATGCAGTACAGCCAAAGCTTTTCTTAA
ACCCAAGAAATCAAATCTCCACGTCAGTCCATTTTCACATGTTCAGAAGA
TTTTGATTGATCCTGAAACGAAAACAGCCAAAGGTGTTGTTTATAAGAAG
AATGGAAAATCCATGACAGTCAAAGCAAAAAAAGAAGTTATCTTGTCTGC
TGGTGCTGTTGCTTCTCCCCAGATTCTGATGACTACCTTGGATGCATTGC
TAAGAGAGGAGCTACAACAACTTACCACCCAGTGGGTACGTGCAAGATGG
GACCACATACTGATGATCAAGCAGTTGTAGATTCAACATTGAAAGTTTAT
GGTATCAAAGGATTACGTGTTATCGATGCATCAATCATGCCAACCATTGT
CAGTGGAAATACTAATGCACCTACAATTATGATCGCTGAAAAAGCTGCTG
ATATCATCAAAGAGGACTGGAAAGAATGAAGGACGTATCAAGTTGAGAAG
TGTCAATGCAGAAGACCATCCATTGATCATACCAAATTACTTCGACCACC
CTGAAGATTTAAGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACTT
GCAGCTGCTATGAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAACC
TGGGTGCGAGCAACATGAGCTAGAGTGCTGAATTATGACACGTTCAAGAT
GTTCACAAATGAAAGAGAAGGTCCTCTCGCCCAATCATTAGTTGTTGGTG
GATTCTTACCCTTGACAACGAAAGCGAAACAAATTGACTGGCCTGAAATA
CAAATACATATCTTCGCTGCACTGACAGGTGACTTTTATGGCTTCAAACA
AGTCTTCAATGTCGATGATAAGTATTGGAAATACCTGGTGAAAGAGATGG
ATGGAAAAGTTGGCATGAGTATTCTGTATTGCGTTCTACGACCAAAAAGC
AGATTTTAATGCTATCAGGAGTTGGACCAAAGGAGGAATTGGAGAAACAT
GGAATTCCGATCATCAAAGAACTTCAAGTTGGATACAATTTACAAGACCA
TGTCAATTATTTTGATTATATCCTCTTGAATGATAGCAGTCGCGATTTCC
ATATGGCTGAATGGGTTGGAAGAAGAAAGCTGGCATCTTCCTGTTGCCCT
TTGCATTATATTTTGGATATAAACTATGTAGGGATAATTTTGTGTTATTA
GTTTTGATACCGACATTACTTTCACCACGTCTTCCCTTCGAAACATACAA
AGAACTAAATCCTGACATTACAGACTTTGCAACAAGCGATGATCAAATAG
TTGATGAATATGATTTTGTGGTTATTGGTGCAGGATCTGCAGGAGCTGTT
GTTGCCAATCGTTTAAGTGAAAACAAATCATGGAAAATTCTTCTACTCGA
AGCTGGTGGAGCTGAAACTATTTTAACTGAAGTTCCTGGATTCGCATATG
AAGCAATTGTTTCAGGATCCAGTTGGAATTATAAAGCAGAAAAGCACGAG
GATAACTTTACTTCGGTAAATCAGGCTAACGGACAAGTTTTATGGCCTAG
AGGGAAAAGTCTTGGAGGCACAAGTGCAATTAATGGTTTGGTGTACACAA
GAGGAAACAAGAATGATTATAATTCGTGGGAGGAACAAGGTAATCCAGGA
TGGGCTTACGAAGAAATTCTGCCATATTTCAAGAAATCAGAAGGCCAGAC
GAAAAAGGATTTAATGGGATCAAAGTATCACTCTACAGAAGGGCCATTAA
CGGTTGAAAGTCCAATGGTGTATCCAGAAATGATGAAAGATACTGAAGAA
GCTTGCTCAACGCTGATTGGTCGAAACACTGACTACAATGGAGAGAAGCA
GACAGGCTGCTTCTTCTACCAATTAACAAGACGCGACGGTCTTCGATGCA
GTACAGCCAAAGCTTTTCTTAAACCCAAGAAATCAAATCTCCACGTCAGT
CCATTTTCACATGTTCAGAAGATTTTGATTGATCCTGAAACGAAAACAGC
CAAAGGTGTTGTTTATAAGAAGAATGGAAAATCCATGACAGTCAAAGCAA
AAAAAGAAGTTATCTTGTCTGCTGGTGCTGTTGCTTCTCCCCAGATTCTG
ATGACTACCTTGGATGCATTGCTAAGAGAGGAGCTACAACAACTTACCAC
CCAGTGGGTACGTGCAAGATGGGACCACATACTGATGATCAAGCAGTTGT
AGATTCAACATTGAAAGTTTATGGTATCAAAGGATTACGTGTTATCGATG
CATCAATCATGCCAACCATTGTCAGTGGAAATACTAATGCACCTACAATT
ATGATCGCTGAAAAAGCTGCTGATATCATCAAAGAGGACTGGAAAGAATG
AAGGACGTATCAAGTTGAGAAGTGTCAATGCAGAAGACCATCCATTGATC
ATACCAAATTACTTCGACCACCCTGAAGATTTAAGAGAATTCGTTGAAGG
GATGAAATTCACCAAGAAACTTGCAGCTGCTATGAAACATTTAAATGCTT
CAACTTATCGCGGTAAAGAACCTGGGTGCGAGCAACATGAGCTAGAGTGC
TGAATTATGACACGTTCAAGATGTTCACAAATGAAAGAGAAGGTCCTCTC
GCCCAATCATTAGTTGTTGGTGGATTCTTACCCTTGACAACGAAAGCGAA
ACAAATTGACTGGCCTGAAATACAAATACATATCTTCGCTGCACTGACAG
GTGACTTTTATGGCTTCAAACAAGTCTTCAATGTCGATGATAAGTATTGG
AAATACCTGGTGAAAGAGATGGATGGAAAAGTTGGCATGAGTATTCTGTA
TTGCGTTCTACGACCAAAAAGCAGATTTTAATGCTATCAGGAGTTGGACC
AAAGGAGGAATTGGAGAAACATGGAATTCCGATCATCAAAGAACTTCAAG
TTGGATACAATTTACAAGACCATGTCAATTATTTTGATTATATCCTCTTG
AATGATAGCAGTCGCGATTTCCATATGGCTGAATGGGTTGGAAGAAGAAA
GCTGGCATCTTCCTGTTGCCCTTTGCATTATATTTTGGATATAAACTATG
TAGGGATAATTTTGTGTTATTAGTTTTGATACCGACATTACTTTCACCAC
GTCTTCCCTTCGAAACATACAAAGAACTAAATCCTGACATTACAGACTTT
GCAACAAGCGATGATCAAATAGTTGATGAATATGATTTTGTGGTTATTGG
TGCAGGATCTGCAGGAGCTGTTGTTGCCAATCGTTTAAGTGAAAACAAAT
CATGGAAAATTCTTCTACTCGAAGCTGGTGGAGCTGAAACTATTTTAACT
GAAGTTCCTGGATTCGCATATGAAGCAATTGTTTCAGGATCCAGTTGGAA
TTATAAAGCAGAAAAGCACGAGGATAACTTTACTTCGGTAAATCAGGCTA
ACGGACAAGTTTTATGGCCTAGAGGGAAAAGTCTTGGAGGCACAAGTGCA
ATTAATGGTTTGGTGTACACAAGAGGAAACAAGAATGATTATAATTCGTG
GGAGGAACAAGGTAATCCAGGATGGGCTTACGAAGAAATTCTGCCATATT
TCAAGAAATCAGAAGGCCAGACGAAAAAGGATTTAATGGGATCAAAGTAT
CACTCTACAGAAGGGCCATTAACGGTTGAAAGTCCAATGGTGTATCCAGA
AATGATGAAAGATACTGAAGAAGCTTGCTCAACGCTGATTGGTCGAAACA
CTGACTACAATGGAGAGAAGCAGACAGGCTGCTTCTTCTACCAATTAACA
AGACGCGACGGTCTTCGATGCAGTACAGCCAAAGCTTTTCTTAAACCCAA
GAAATCAAATCTCCACGTCAGTCCATTTTCACATGTTCAGAAGATTTTGA
TTGATCCTGAAACGAAAACAGCCAAAGGTGTTGTTTATAAGAAGAATGGA
AAATCCATGACAGTCAAAGCAAAAAAAGAAGTTATCTTGTCTGCTGGTGC
TGTTGCTTCTCCCCAGATTCTGATGACTACCTTGGATGCATTGCTAAGAG
AGGAGCTACAACAACTTACCACCCAGTGGGTACGTGCAAGATGGGACCAC
ATACTGATGATCAAGCAGTTGTAGATTCAACATTGAAAGTTTATGGTATC
AAAGGATTACGTGTTATCGATGCATCAATCATGCCAACCATTGTCAGTGG
AAATACTAATGCACCTACAATTATGATCGCTGAAAAAGCTGCTGATATCA
TCAAAGAGGACTGGAAAGAATGAAGGACGTATCAAGTTGAGAAGTGTCAA
TGCAGAAGACCATCCATTGATCATACCAAATTACTTCGACCACCCTGAAG
ATTTAAGAGAATTCGTTGAAGGGATGAAATTCACCAAGAAACTTGCAGCT
GCTATGAAACATTTAAATGCTTCAACTTATCGCGGTAAAGAACCTGGGTG
CGAGCAACATGAGCTAGAGTGCTGAATTATGACACGTTCAAGATGTTCAC
AAATGAAAGAGAAGGTCCTCTCGCCCAATCATTAGTTGTTGGTGGATTCT
TACCCTTGACAACGAAAGCGAAACAAATTGACTGGCCTGAAATACAAATA
CATATCTTCGCTGCACTGACAGGTGACTTTTATGGCTTCAAACAAGTCTT
CAATGTCGATGATAAGTATTGGAAATACCTGGTGAAAGAGATGGATGGAA
AAGTTGGCATGAGTATTCTGTATTGCGTTCTACGACCAAAAAGCAGATTT
TAATGCTATCAGGAGTTGGACCAAAGGAGGAATTGGAGAAACATGGAATT
CCGATCATCAAAGAACTTCAAGTTGGATACAATTTACAAGACCATGTCAA
TTATTTTGATTATATCCTCTTGAATGATAGCAGTCGCGATTTCCATATGG
CTGAATGGGTTGGAAGAAGAAAGCTGGCATCTTCCTGTTGCCCTTTGCAT
TATATTTTGGATATAAACTATGTAGGGATAATTTTGTGTTATTAGTTTTG
ATACCGACATTACTTTCACCACGTCTTCCCTTCGAAACATACAAAGAACT
AAATCCTGACATTACAGACTTTGCAACAAGCGATGATCAAATAGTTGATG
AATATGATTTTGTGGTTATTGGTGCAGGATCTGCAGGAGCTGTTGTTGCC
AATCGTTTAAGTGAAAACAAATCATGGAAAATTCTTCTACTCGAAGCTGG
TGGAGCTGAAACTATTTTAACTGAAGTTCCTGGATTCGCATATGAAGCAA
TTGTTTCAGGATCCAGTTGGAATTATAAAGCAGAAAAGCACGAGGATAAC
TTTACTTCGGTAAATCAGGCTAACGGACAAGTTTTATGGCCTAGAGGGAA
AAGTCTTGGAGGCACAAGTGCAATTAATGGTTTGGTGTACACAAGAGGAA
ACAAGAATGATTATAATTCGTGGGAGGAACAAGGTAATCCAGGATGGGCT
TACGAAGAAATTCTGCCATATTTCAAGAAATCAGAAGGCCAGACGAAAAA
GGATTTAATGGGATCAAAGTATCACTCTACAGAAGGGCCATTAACGGTTG
AAAGTCCAATGGTGTATCCAGAAATGATGAAAGATACTGAAGAAGCTTGC
TCAACGCTGATTGGTCGAAACACTGACTACAATGGAGAGAAGCAGACAGG
CTGCTTCTTCTACCAATTAACAAGACGCGACGGTCTTCGATGCAGTACAG
CCAAAGCTTTTCTTAAACCCAAGAAATCAAATCTCCACGTCAGTCCATTT
TCACATGTTCAGAAGATTTTGATTGATCCTGAAACGAAAACAGCCAAAGG
TGTTGTTTATAAGAAGAATGGAAAATCCATGACAGTCAAAGCAAAAAAAG
AAGTTATCTTGTCTGCTGGTGCTGTTGCTTCTCCCCAGATTCTGATGACT
ACCTTGGATGCATTGCTAAGAGAGGAGCTACAACAACTTACCACCCAGTG
GGTACGTGCAAGATGGGACCACATACTGATGATCAAGCAGTTGTAGATTC
AACATTGAAAGTTTATGGTATCAAAGGATTACGTGTTATCGATGCATCAA
TCATGCCAACCATTGTCAGTGGAAATACTAATGCACCTACAATTATGATC
GCTGAAAAAGCTGCTGATATCATCAAAGAGGACTGGAAAGAATGAAGGAC
GTATCAAGTTGAGAAGTGTCAATGCAGAAGACCATCCATTGATCATACCA
AATTACTTCGACCACCCTGAAGATTTAAGAGAATTCGTTGAAGGGATGAA
ATTCACCAAGAAACTTGCAGCTGCTATGAAACATTTAAATGCTTCAACTT
ATCGCGGTAAAGAACCTGGGTGCGAGCAACATGAGCTAGAGTGCTGAATT
ATGACACGTTCAAGATGTTCACAAATGAAAGAGAAGGTCCTCTCGCCCAA
TCATTAGTTGTTGGTGGATTCTTACCCTTGACAACGAAAGCGAAACAAAT
TGACTGGCCTGAAATACAAATACATATCTTCGCTGCACTGACAGGTGACT
TTTATGGCTTCAAACAAGTCTTCAATGTCGATGATAAGTATTGGAAATAC
CTGGTGAAAGAGATGGATGGAAAAGTTGGCATGAGTATTCTGTATTGCGT
TCTACGACCAAAAAGCAGATTTTAATGCTATCAGGAGTTGGACCAAAGGA
GGAATTGGAGAAACATGGAATTCCGATCATCAAAGAACTTCAAGTTGGAT
ACAATTTACAAGACCATGTCAATTATTTTGATTATATCCTCTTGAATGAT
AGCAGTCGCGATTTCCATATGGCTGAATGGGTTGGAAGAAGAAAGCTGGC
ATCTTCCTGTTGCCCTTTGCATTATATTTTGGATATAAACTATGTAGGGA
TAATTTTGTGTTATTAGTTTTGATACCGACATTACTTTCACCACGTCTTC
CCTTCGAAACATACAAAGAACTAAATCCTGACATTACAGACTTTGCAACA
AGCGATGATCAAATAGTTGATGAATATGATTTTGTGGTTATTGGTGCAGG
ATCTGCAGGAGCTGTTGTTGCCAATCGTTTAAGTGAAAACAAATCATGGA
AAATTCTTCTACTCGAAGCTGGTGGAGCTGAAACTATTTTAACTGAAGTT
CCTGGATTCGCATATGAAGCAATTGTTTCAGGATCCAGTTGGAATTATAA
AGCAGAAAAGCACGAGGATAACTTTACTTCGGTAAATCAGGCTAACGGAC
AAGTTTTATGGCCTAGAGGGAAAAGTCTTGGAGGCACAAGTGCAATTAAT
GGTTTGGTGTACACAAGAGGAAACAAGAATGATTATAATTCGTGGGAGGA
ACAAGGTAATCCAGGATGGGCTTACGAAGAAATTCTGCCATATTTCAAGA
AATCAGAAGGCCAGACGAAAAAGGATTTAATGGGATCAAAGTATCACTCT
ACAGAAGGGCCATTAACGGTTGAAAGTCCAATGGTGTATCCAGAAATGAT
GAAAGATACTGAAGAAGCTTGCTCAACGCTGATTGGTCGAAACACTGACT
ACAATGGAGAGAAGCAGACAGGCTGCTTCTTCTACCAATTAACAAGACGC
GACGGTCTTCGATGCAGTACAGCCAAAGCTTTTCTTAAACCCAAGAAATC
AAATCTCCACGTCAGTCCATTTTCACATGTTCAGAAGATTTTGATTGATC
CTGAAACGAAAACAGCCAAAGGTGTTGTTTATAAGAAGAATGGAAAATCC
ATGACAGTCAAAGCAAAAAAAGAAGTTATCTTGTCTGCTGGTGCTGTTGC
TTCTCCCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002567XLOC_002567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004573-exon-sc0000045-1575043694:755950..757174TCONS_00004573-exon-sc0000045-1575043694:755950..757174Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1575043694:755648..755805TCONS_00004573-exon-sc0000045-1575043694:755648..755805Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1575043694:754902..755180TCONS_00004573-exon-sc0000045-1575043694:754902..755180Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1575043694:754199..754392TCONS_00004573-exon-sc0000045-1575043694:754199..754392Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1575043694:752972..753933TCONS_00004573-exon-sc0000045-1575043694:752972..753933Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1510915933:755950..757174TCONS_00004573-exon-sc0000045-1510915933:755950..757174Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1510915933:755648..755805TCONS_00004573-exon-sc0000045-1510915933:755648..755805Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1510915933:754902..755180TCONS_00004573-exon-sc0000045-1510915933:754902..755180Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1510915933:754199..754392TCONS_00004573-exon-sc0000045-1510915933:754199..754392Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1510915933:752972..753933TCONS_00004573-exon-sc0000045-1510915933:752972..753933Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1491911889:755950..757174TCONS_00004573-exon-sc0000045-1491911889:755950..757174Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1491911889:755648..755805TCONS_00004573-exon-sc0000045-1491911889:755648..755805Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1491911889:754902..755180TCONS_00004573-exon-sc0000045-1491911889:754902..755180Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1491911889:754199..754392TCONS_00004573-exon-sc0000045-1491911889:754199..754392Clytia hemisphaericaexon
TCONS_00004573-exon-sc0000045-1491911889:752972..753933TCONS_00004573-exon-sc0000045-1491911889:752972..753933Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004573-proteinTCONS_00004573-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:752972..757174 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0953273	0.177886	0.278973	0.169971	0.0588468	0.143329	0.516992	0.905474	3.14337	3.25331	5.07801	4.81821	70.3495	68.621	36.8294	30.6449	11.936	16.4185	20.7804	15.9588	3.32801	3.18551	6.47263	5.77961	2.32421	1.16051	1.49988	2.00409	24.3007	20.1417
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000172GMC_OxRdtase_N
IPR012132GMC_OxRdtase
IPR007867GMC_OxRtase_C
IPR023753FAD/NAD-binding_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
Blast
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BLAST of TCONS_00004573 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 2.160e-86
Identity = 216/589 (36.67%), Postives = 312/589 (52.97%), Query Frame = 2 
Query:  407 FATSDDQIVDEYDFXXXXXXXXXXXXXNRLSENKSWKILLLEAGGAETILTEVPGFAYE-----AIVSG-----SSWNYKAEKHEDNFTSVNQANGQVL-WPRGKSLGGTSAINGLVYTRGNKNDYNSWEEQGNPGWAYEEILPYFKKSEGQTKKDLMGSKYHSTEGPLTVESPM----VYPEMMKDTEEACSTLIGRNTDYNGEKQTGCFFYQLTRRDGLRCSTAKAFLKP--KKSNLHVSPFSHVQKILIDPETKTAKGVVYKKNGKSMTVKAKKEVILSAGAVASPQILMLSGVGPKEELEKHGIPIIKELQ-VGYNLQDHVNYF------DYILLNDSSRDFHMAEVLNYDTFKMFTNEREGPLAQSLVVGGFLPLTTKAKQIDWPEIQIHIFAALTGDFYGFKQVFNVDDKYWKYLVKEMDGKVGMSILYCVLRPKSRGRIKLRSVNAEDHPLIIPNYFDHPEDLREFVEGMKFTKKLAAAMKHLNASTYRGKE--PGCEQHELDSDDYLGCIAKRGATTTYHPVGTCKMGPHTDDQAVVDSTLKVYGIKGLRVIDASIMPTIVSGNTNAPTIMIAEKAADIIK 2095
             A++  +  DEY +VV+GAGSAG V+A RL+E+ + ++LLLEAG  + +L      +++     A+V+       +W Y  E            +G+VL WPRG+  GG+S++N +VY RG+  DY  W+ QG  GW Y   LPYF+K++G    +L  S+Y   +GPL V        ++   ++ T++A   L     D NG +Q G  +  +T  +G R S A A+L P   ++NL     + V ++L   E   A GV Y KNG+S    A KEVILS GA+ SPQ+LMLSG+G  ++L+K GIP++  L  VG NLQDH+  +        I L+ + +       +  +    FT   EG  A  L  GGF+        +  P+IQ H   +   D     +V    + Y               +    +R  S G +KLRS N +DHP+I PNY     D+ +F   +K T+++ A       + +RGKE  PG     + SD  +    +  A + YHP  TCKMG  +D  AVVD   +V G++ LRV+DASIMP++VSGN NAPTIMIAEKAADIIK
Sbjct:   30 LASAGSESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAG-PKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRG-------LDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGH---ELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPL---TEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLF--EGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKV-CIGLEWLWKFTG--EGATAH-LETGGFI---RSQPGVPHPDIQFHFLPSQVID---HGRVPTQQEAY--------------QVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEA---LAPFRGKELQPGS---HIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIK 572
The following BLAST results are available for this feature:
BLAST of TCONS_00004573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHDH2.160e-8636.67Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
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