TCONS_00004236-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004236-protein
Unique Name	TCONS_00004236-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	567

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004236-protein ID=TCONS_00004236-protein|Name=TCONS_00004236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp
YLKTVRRQTLRFYKIRSKKKMKNLYQDEQFYTSVDIYMLTDGLRYGYKVF
RELIAQHKKIVTTITEIQDEENEGNKGNFSKTFKTINHKFNTSTYETITE
VAADIRRLLEEIYSYLGTDHYLFRNVLTLEKVMEQKFALLPRTYRDQCSI
ESTNIVLGKGFINQQLYSTRRRGNKTEGHETPILFQMKHEKEILEREQRQ
RKEEEKRKKIEHLKKEYANFEDEMLTGQVLKELRTCWEVPCVGILIYMLQ
DFFDIRDFNYTEFELGSLYMEKSGLFARILEAIFSTPHQRKRYKEKTLSI
KKPPKFEVLFEKLNARITKWYSTADYQGAEYATEKFGFCRTFFNSIGEDN
PLTDVESFAQLRLQQKMTIMKALCESTLHTDETMCQCLANIPILQRQDLY
LGQDNEKHSYYFFPQFNTTDVRLFKKYHQTKSNKNKVEHEYELVAWDLVS
LDEIIKRFQKIRKTKKSNLYDLQQTMEALHEELMGRENEFKRHNEKAKLS
FMKDYLADEEKTVDEDKDGNDSEDSEKNGHNEEADIVDGKNGLEVNEDDE
KPVEQEKINENKHSKES

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002358	XLOC_002358	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004236	TCONS_00004236	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001487	Bromodomain

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 187..223
None	No IPR available	COILS	Coil	Coil	coord: 476..496
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 510..567
IPR001487	Bromodomain	GENE3D	1.20.920.10		coord: 3..221 e-value: 1.0E-9 score: 37.7
IPR001487	Bromodomain	SUPERFAMILY	47370	Bromodomain	coord: 83..144

Blast

[Close]

BLAST of TCONS_00004236-protein vs. Swiss-Prot (Human)
Match: K2026 (Uncharacterized protein KIAA2026 OS=Homo sapiens GN=KIAA2026 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 7.240e-41
Identity = 98/355 (27.61%), Postives = 178/355 (50.14%), Query Frame = 0

Query:   86 INHKFNTSTYETITEVAADIRRLLEEIYSYLGTDHYLFRNVLTLEKVMEQKFALLPRTYRDQCSIESTNIVLGKGFINQQ------LYSTRRRGNK------TEGHETPILFQ-MKHEKEILEREQRQRKEEEKRKKIEHLKKEYANFEDEMLTGQVLKELRTCWEVPCVGILIYMLQDFFDIRDFNYTEFELGSLYMEKSGLFARILEAIFSTPHQRKRYKEKTLSIKKPPKFEVLFEKLNARITKWYS-TADYQGAEYATEKFGFCRTFFNSIGEDNPLTDVESFAQLRLQQKMTIMKALCESTLHTDETMCQCLANIPILQRQDLYLGQDNEKHSYYFFPQFNTTDVRLFKK 426
            +  KF +  Y  ITE  AD R +LE  Y   G DH++ +    LE ++EQK ALL R  R++ +I  T+    +G+   +        STRRR         T G    I+ Q ++ E+++  +E+++ +E+E+++  E  +KE   +E ++L       + T WE+P +G  + + Q   ++ +  + E E   L  + +   ++I+ ++ S PH+R      TL  +    +      L  ++ +WY+     +  +   EK G C  FF  +GE NPL + + F +L   QK+ ++K LC+    T + +   +   PI + +++ LG D  +++Y  FPQF   DVR++K+
Sbjct:  142 MEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKLALLSRHLREKTTIAVTS----RGYYGLEDEKGTACTSTRRRSTPRSLAGLTSGVFESIMVQVLRQEEQLRAKEEKRLREQERKEAEEASQKEIEEWERKLLAQAAPTCMETMWEIPAIGHFLCLAQQILNLPEIVFYELERCLLMPQCNAFLSKIMTSLLSPPHRR-----PTLHRRPTLPYRTWEAALRQKVQQWYTAVGQTENPDNCAEKLGLCPQFFKVLGEVNPLEE-KPFHELPFYQKVWLLKGLCDFVYETQKEVQDAVLGQPIHECREVILGYDYLENAYVHFPQFCGADVRIYKQ 486

The following BLAST results are available for this feature:

BLAST of TCONS_00004236-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004236-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
K2026	7.240e-41	27.61	Uncharacterized protein KIAA2026 OS=Homo sapiens G...	[more]

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TCONS_00004236-protein (polypeptide) - C. hemisphaerica