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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004236 ID=TCONS_00004236|Name=TCONS_00004236|organism=Clytia hemisphaerica|type=transcript|length=3259bpRun BLAST on NCBI protein sequence of TCONS_00004236-protein >TCONS_00004236-protein ID=TCONS_00004236-protein|Name=TCONS_00004236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp YLKTVRRQTLRFYKIRSKKKMKNLYQDEQFYTSVDIYMLTDGLRYGYKVFRun BLAST on NCBI transcript from alignment at sc0000041:337191..371047+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004236 ID=TCONS_00004236|Name=TCONS_00004236|organism=Clytia hemisphaerica|type=transcript|length=33857bp|location=Sequence derived from alignment at sc0000041:337191..371047+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000041:337191..371047+ >TCONS_00004236 ID=TCONS_00004236|Name=TCONS_00004236|organism=Clytia hemisphaerica|type=CDS|length=20448bp|location=Sequence derived from alignment at sc0000041:337191..371047+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004236 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 192.2 bits (487), Expect = 6.267e-52 Identity = 137/432 (31.71%), Postives = 228/432 (52.78%), Query Frame = 1
Query: 1771 HITDHKQKRRKWKNDTKCGGMVRKNKKISINVRGTVYETFEETLQRFPHTLLGDPTLRISHYDVQRNSLYFDNTCEAFDAILFYYQSNGCLVRPPWVPMXXXXXXXXXXXXXXNAIKSMKEREGYDTQKKVTVKNERKTCRRKLWNFLEKPESSLMSRLYTFLSLMMVFFSITLDCFETTLPVLPSDYD------------------IMQDNWEKTKLSLNTFFAAEFIIRFSACPYRRKFCKAFLNIVDFFAIFPSFLTYFLD---------RENTRSIMFXXXXXXXXXXXXXXXSKSFQTLSVVLHILVKSLADLLTLIFCMLISCTIFGSIIYYAEHFSESPDQRTSQISSIPEGMYFAMQTVVSIGYGDIVPSSFAGKITTAMTAIVGALTMTVPLLSLGGKYFATYTKTFDVNLSADLINTPGPNV 2985
H D R+ +D +C +++ IN+ G +ET +TL +FP+TLLG+P R+ ++D RN +FD +FDAIL+YYQS G L RP VP++ F E F++LGE A++ +E EG+ +++ + K +R++W E PESS +R+ +S+M++ SI + C E TLP L D D I D + + +F+ E ++RF ACP + F K +N +D AI P F+T + E S+ +RV+R +RV R+ +LS+ + L ++ L S+ +L LIF + I +F S +Y+AE ++ S SSIP+ ++A+ ++ ++GYGD+ P + GKI ++ AI G LT+ +P+ + + Y + + A L++ PN+
Sbjct: 18 HPQDGSYPRQADHDDHECC------ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLP--EKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLE-TLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE-----AEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQLLHVSSPNL 435 The following BLAST results are available for this feature:
BLAST of TCONS_00004236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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