TCONS_00003545-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003545-protein
Unique NameTCONS_00003545-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003545-protein ID=TCONS_00003545-protein|Name=TCONS_00003545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=741bp
MTGNNGRVRSAQNMRHINKKKNHSGFGSGGSNSTNWRETTKNNNYNDFAT
NGYKNHHLTSAFVTLVGLTVEVQKTDGHIYEGILESVSPDLEVHLCHASL
KSINGESIENGDSNQHKTLMFQFCDIVRCNAKDVDLDFAKRQNLMTDTAI
SGGTGTFVERELVQWQADEGDTVDGAINELDTMGNTGGWKFEEMIKQHED
NYGTESTFDSTMSNYMTPLENYDEETRRALEEKAERTAREIQGDTKHKEF
EQADSGQGEEELFSAVHRTPSNPSSNNNSYPNSPRNADGKPMGGGARGGK
NAQQPPRFQHRRSQDDVTGGAPRIHHGGSQMQRVNGGSPRHPQYQQQQHE
YSNNRSPQNHQSASPYNSHHHSNHHTHHSNHNDPHHKQVPSKNQPTSGAP
HNHAQSVVVDPNIPPPLKSYSSVAARNKPSGGMPPLPGQQPQGVQITNNI
GQQPPVNNGRPPMKAGPPAQAVEPQDISKALPVKQEQLHNAKQQYIAQAK
QAVAKSNSTPPVNKPPVNQMPMSTGTHQDAPKAPTQGPPGLSLAAGSAPT
PTSNAPKASYSSRLSTTNKTAAVEHTRMEQMPSTTPRGQGEVIKFGKINK
INEDGRKEPDLNKLKDFSHSFKLESKIKKTEVKTDTTASTTHVAVATPSS
TTKESKAVVEETITKSVANVALSAPVPETVLSSKPNTKDVSARPSITTTT
STTTTTTSATRVATVSTTTTTSVVSSVVSATVTTSSTTPSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001981XLOC_001981Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003545TCONS_00003545Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009604LsmAD_domain
IPR025852SM_dom_ATX
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009604LsmAD domainSMARTSM01272LsmAD_2coord: 202..269
e-value: 4.6E-12
score: 56.1
IPR009604LsmAD domainPFAMPF06741LsmADcoord: 202..268
e-value: 1.0E-8
score: 35.5
IPR025852Ataxin 2, SM domainPFAMPF14438SM-ATXcoord: 55..132
e-value: 1.0E-12
score: 47.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..569
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 680..741

Blast
[Close]
BLAST of TCONS_00003545-protein vs. Swiss-Prot (Human)
Match: ATX2 (Ataxin-2 OS=Homo sapiens GN=ATXN2 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.312e-27
Identity = 72/220 (32.73%), Postives = 114/220 (51.82%), Query Frame = 0 
Query:   53 YKNHHLTSAFVTLVGLTVEVQKTDGHIYEGILESVSPDLEVHLCHASLKSINGESIENGDSNQHKTLMFQFCDIVRCNAKDVDLDFAKRQNLMTDTAISGGT-GTFVERELVQWQADEGDTVDGAINELDTMGN--TGGWKFEEMIKQHEDNYGTESTFDSTMSNYMTPLENYDEETRRALEEKAERTAREIQGDTKHK-EFEQADSGQGEEELFSAVHR 268
            Y N  +     ++VG   EVQ  +G IYEG+ ++ SP  ++ L  A  KS    S    +    ++++F+  D V    KD+D  +AKR +  TD+AIS    G   E++L  W A E      A  EL+ + N  + GW   +M + +E+NYG  ST+DS++S+Y  PLE  + E     E +A + A EI+   ++K      +  + EEE ++AV R
Sbjct:  263 YANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIM-ESILFKCSDFVVVQFKDMDSSYAKR-DAFTDSAISAKVNGEHKEKDLEPWDAGELT----ANEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQR 476
The following BLAST results are available for this feature:
BLAST of TCONS_00003545-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATX24.312e-2732.73Ataxin-2 OS=Homo sapiens GN=ATXN2 PE=1 SV=2[more]
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