|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003545 ID=TCONS_00003545|Name=TCONS_00003545|organism=Clytia hemisphaerica|type=transcript|length=2665bpRun BLAST on NCBI protein sequence of TCONS_00003545-protein >TCONS_00003545-protein ID=TCONS_00003545-protein|Name=TCONS_00003545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=741bp MTGNNGRVRSAQNMRHINKKKNHSGFGSGGSNSTNWRETTKNNNYNDFATRun BLAST on NCBI transcript from alignment at sc0000030:205976..239829+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003545 ID=TCONS_00003545|Name=TCONS_00003545|organism=Clytia hemisphaerica|type=transcript|length=33854bp|location=Sequence derived from alignment at sc0000030:205976..239829+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:205976..239829+ >TCONS_00003545 ID=TCONS_00003545|Name=TCONS_00003545|organism=Clytia hemisphaerica|type=CDS|length=31164bp|location=Sequence derived from alignment at sc0000030:205976..239829+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00003545 vs. Swiss-Prot (Human)
Match: ATX2 (Ataxin-2 OS=Homo sapiens GN=ATXN2 PE=1 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 7.356e-25 Identity = 74/222 (33.33%), Postives = 115/222 (51.80%), Query Frame = 1
Query: 484 YKNHHLTSAFVTLVGLTVEVQKTDGHIYEGILESVSPDLEVHLCHASLKSINGESIENGDSNQHKTLMFQFCDIVRCNAKDVDLDFAKRQNLMTDTAISGGT-GTFVERELVQWQADEGDTVDGAINELDTMGN--TGGWKFEEMIKQHEDNYGTESTFDSTMSNYMTPLENYDEETRRALEEKAERTAREIQGDTKHK---EFEQADSGQGEEELFSAVHR 1131
Y N + ++VG EVQ +G IYEG+ ++ SP ++ L A KS S + ++++F+ D V KD+D +AKR + TD+AIS G E++L W A E A EL+ + N + GW +M + +E+NYG ST+DS++S+Y PLE + E E +A + A EI+ ++K E D + EEE ++AV R
Sbjct: 263 YANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIM-ESILFKCSDFVVVQFKDMDSSYAKR-DAFTDSAISAKVNGEHKEKDLEPWDAGELT----ANEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSAQYKARVALENDD--RSEEEKYTAVQR 476 The following BLAST results are available for this feature:
BLAST of TCONS_00003545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.