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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00003128-protein ID=TCONS_00003128-protein|Name=TCONS_00003128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1119bp
MADDLVFPEDDLMGDFDTNLEDLLNIPQLVPVPPLDSMQHNMQRNYANMQ
HHMNNMGAAPQTNNSSYRPITQLMKQTQELASTLGSPLSSSLNQRMNYNN
IVNTSSMLNQQQHHQQHQNMPNNIQNRLIGNNMNYVNHTANQQKSSQYLV
VGGQRIPTQPQQALPQHQQSPTQHLSQSSSSPLHAQGSPIFDMTSPSSLQ
QQHQNSFKAMSPSSNIQQPVQKVITTNNQPKKAIVLTTPQQTQQVHHQPQ
LAQNIQQPKPKQTTPPQLISTGASNNPLQQNGVIIKTADQKLMFVTEVNG
KKVGYVLPNQKQPSSPNPSVTVTVSTLSATQSNLQQQQPVVQTNIQKPVQ
QAVIQNTQKPIQQAIVQNTQKLAQQTISQNIPKLIPQALSQNVPKAIPQT
IVQNTQKSVQQQQSVIQNSQQKEGLAPSLDSIKPSIQKDSKDNTIKPAVE
KTLKERLQGLRNNVNNANLRTQLNLNKEKNEKLISQLNNHNALPHVEQRI
VQVHTVTQQTNNPVSKIISDFDNTFNNDQSPPPTPPTPTSTLTKDNLAAL
ANNKPAENMSFLGDEEDGQDLDFSESDLTAIQEDSDEPMITSISVPKQNE
IEDVSMNNNTNNDDEDSDSLPLSLLKHEEPISIVRENNTEEESSGAKPAK
RSKKSDDSVPLSVVAASLKKDARQEAAPKPRKKRAGRKKKDPDEPTKPIL
AYQLFFREAQQRLKEENPMYKENFGELSRKIGKLWEELDPEKKKVHRQNY
QKEKAEYDIKLKEYKEKKALEEAQNEALSPSTSANQNSRDGLSTAPDDDD
EDAPLKKTSPSKKGAKKKTPATSRPKLTATTIATSSTLSPPLHNFNEESN
DSVIDQAADGTEVKRKRKYIKKTKTSATDSPSPPSTDTEGSESEEDDAIS
RIKELAAKAKKTLKKIEKQTSKGKGKGKVVKMEVETVSTNIQYDPSPKKV
EANAQPETMETDQPKHPEASTPVQEEMSPPRATVETPASTPTAPEVKGMT
AKNLKATTKEKVKVKEKASDKVNNNDTNKDYKTDDSSIPPLSSPPPKASF
KIPKKAHGENGQVAPQGPRLCVRESCPNPIKVTRERGAQYCSNDCLVLYC
REVFDAWVIDRQKEEALKT Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009071 | HMG_box_dom |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 899..922 |
| None | No IPR available | COILS | Coil | Coil | coord: 450..486 |
| None | No IPR available | COILS | Coil | Coil | coord: 402..422 |
| None | No IPR available | COILS | Coil | Coil | coord: 747..774 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 159..216 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 770..1067 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 737..758 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 238..275 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 417..443 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 580..701 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 517..543 |
| None | No IPR available | CDD | cd01390 | HMGB-UBF_HMG-box | coord: 695..762
e-value: 2.81672E-13
score: 65.7269 |
| IPR009071 | High mobility group box domain | SMART | SM00398 | hmgende2 | coord: 694..766
e-value: 8.4E-12
score: 55.2 |
| IPR009071 | High mobility group box domain | GENE3D | 1.10.30.10 | | coord: 678..766
e-value: 2.0E-16
score: 59.5 |
| IPR009071 | High mobility group box domain | PFAM | PF00505 | HMG_box | coord: 695..765
e-value: 1.9E-10
score: 40.9 |
| IPR009071 | High mobility group box domain | PROSITE | PS50118 | HMG_BOX_2 | coord: 695..765
score: 16.064 |
| IPR009071 | High mobility group box domain | SUPERFAMILY | 47095 | HMG-box | coord: 686..767 |
Blast
The following BLAST results are available for this feature:
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