TCONS_00002824-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002824-protein
Unique Name	TCONS_00002824-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	322

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002824-protein ID=TCONS_00002824-protein|Name=TCONS_00002824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MKIFHLFVYLFLLFNYHQCKHSEDQSTVDDIENDVLMSKSRHYFCKNVLQ
NRDGKDGRDGRDGRDGIRGPPGEKGSTGRAGKDCDQQMQWERIQHRPPSN
DGTQGLTGEKGDKGAPGKDGAHGTPGLPGVPGRDGINGTIGEKGSPGLPG
RDGENGTAGIQGPPGESGRNGTDGKPGKNGAPGIPGEDGNPGRVGNWKEC
KWNNIQDSRTRGLIKECSFVKKYPHTYVKVTVVTNVHIRSNTGKRWFVTF
DNKECSHQTPIGLFVSNVTGFTPFYLTGSCLVNKTGIVLIGFHVQNGSVV
AYTGHGNSSTNIIIEEVIPPQA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001541	XLOC_001541	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002824	TCONS_00002824	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008160	Collagen

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008160	Collagen triple helix repeat	PFAM	PF01391	Collagen	coord: 138..195 e-value: 7.2E-10 score: 38.4 coord: 101..154 e-value: 5.1E-9 score: 35.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..195

Blast

[Close]

BLAST of TCONS_00002824-protein vs. Swiss-Prot (Human)
Match: COLA1 (Collagen alpha-1(XXI) chain OS=Homo sapiens GN=COL21A1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.089e-17
Identity = 62/151 (41.06%), Postives = 73/151 (48.34%), Query Frame = 0

Query:   52 RDGKDGRDGRDGRDGIRGPPGEKGSTGRAGKDCDQQMQWERIQHRPPSNDGTQGLTGEKGDKGAPGKDGAHGTPGL---PGVPGRDGINGTIGEKGSPGLPGRDGENGTAGIQGPPGESGRNGTDGKPGKNGAPGIPGEDGNPGRVGNWKE 199
            RDG  G  G  G  G+ G PG KG  G  G         ++       N G  GL G  G+ G  GKDG  G+PG     G PG  G +GT GE G PG PG  G  G  G  GPPG+ G+ G  G PG  G+ G PG+ G PG  G+  E
Sbjct:  510 RDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDKGSPGFYGKKGAKGEKGNAGFPGLPGPAGEPGRHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGE 660

HSP 2 Score: 78.1814 bits (191), Expect = 6.523e-16
Identity = 61/149 (40.94%), Postives = 77/149 (51.68%), Query Frame = 0

Query:   54 GKDGRDGRDGRDGIRGPPG---EKGSTGRAGKDCDQQMQWERIQHRPPSNDGTQGLTGEKGDKGAPGKDGAHGTPGLPGVPGRDGINGTIGEKGSPGLPGRDGENGTAGIQGPPGESGRNGTDGKPGKNGAPGIPGEDGNPGRVGNWKE 199
            G  G  GR G+DG+ G PG   E GS G  G+D        R +   P   G +GL G+KG+ G PG+ G  G PG+PG+    G NG+ G+ G+PG  G  GE G  G+ G  G  G  G  G PG+ G  G+PG  G  G  GN  E
Sbjct:  566 GPAGEPGRHGKDGLMGSPGFKGEAGSPGAPGQD------GTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPGMPGL---MGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEPGATGSPGEPGYMGLPGIQGKKGDKGNQGE 705

The following BLAST results are available for this feature:

BLAST of TCONS_00002824-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002824-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
COLA1	5.089e-17	41.06	Collagen alpha-1(XXI) chain OS=Homo sapiens GN=COL...	[more]

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TCONS_00002824-protein (polypeptide) - C. hemisphaerica