TCONS_00002805-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002805-protein
Unique Name	TCONS_00002805-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	439

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002805-protein ID=TCONS_00002805-protein|Name=TCONS_00002805-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MKMLMQKFILLTLHYLVITECQKPVKSKGTVQPLVYLFKYGYVSTNDFTE
NLPLKSNTITSFQKFAGLPLTGILDGRTFQQMRQPRCGMIDEVEQQNENK
IKTSQRTTSWLSLFDKREEKLLTWSVKNGGQQITKAKVVHIITKAFKLWS
SACDIRFKQVRNNPDIEISFQSRGHGDGNYFDGRGGILAHAFYPQSGKQG
SETLVGDIHFDNAEQFEAQSKEGRNYFVWLATHEIGHSLGLRHSQIKGSV
MFPWYDKQKHKMVKLHKSDIRALRRLYKNVELAPPTTSSGLSTPSTDMKT
PSLIFTTNPESTLEASIGPMRTTGTTRSEGVSTSSEDSTSTEVSTTGEPV
TTHETTLSLTSTATPKVSTKSESGDPTETLQTSTTNYQEPTVETSSTMTS
TNQPATEFKEVSNAVMEGSSINPFESSTQPAXLRKYLPQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001530	XLOC_001530	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002805	TCONS_00002805	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR021190	Pept_M10A
IPR006026	Peptidase_Metallo
IPR001818	Pept_M10_metallopeptidase
IPR024079	MetalloPept_cat_dom
IPR033739	M10A_MMP
IPR002477	Peptidoglycan-bd-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0004222	metalloendopeptidase activity
GO:0008237	metallopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Cellular Component**
Term	Definition
GO:0031012	extracellular matrix

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0031012	extracellular matrix
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021190	Peptidase M10A	PRINTS	PR00138	MATRIXIN	coord: 230..255 score: 53.85 coord: 265..278 score: 33.8 coord: 164..192 score: 56.77 coord: 142..157 score: 38.49 coord: 82..95 score: 45.21
IPR006026	Peptidase, metallopeptidase	SMART	SM00235	col_5	coord: 111..279 e-value: 6.3E-19 score: 78.9
IPR001818	Peptidase M10, metallopeptidase	PFAM	PF00413	Peptidase_M10	coord: 118..277 e-value: 4.8E-42 score: 143.4
IPR024079	Metallopeptidase, catalytic domain	GENE3D	3.40.390.10		coord: 18..283 e-value: 2.9E-59 score: 199.9
IPR033739	Peptidase M10A, catalytic domain	CDD	cd04278	ZnMc_MMP	coord: 118..277 e-value: 6.25165E-57 score: 185.871
IPR002477	Peptidoglycan binding-like	SUPERFAMILY	47090	PGBD-like	coord: 24..91
None	No IPR available	SUPERFAMILY	55486	Metalloproteases ("zincins"), catalytic domain	coord: 105..277

Blast

[Close]

BLAST of TCONS_00002805-protein vs. Swiss-Prot (Human)
Match: MMP7 (Matrilysin OS=Homo sapiens GN=MMP7 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.328e-35
Identity = 78/220 (35.45%), Postives = 117/220 (53.18%), Query Frame = 0

Query:   59 ITSFQKFAGLPLTGILDGRTFQQMRQPRCGMIDEVEQQNENKIKTSQRTTSWLSLFDKREEKLLTWSVKNGGQQITKAKVVHIITKAFKLWSSACDIRFKQV-RNNPDIEISFQSRGHGDGNYFDGRGGILAHAFYPQSGKQGSETLVGDIHFDNAEQFEAQSKEGRNYFVWLATHEIGHSLGLRHSQIKGSVMFPWYDKQKHKMVKLHKSDIRALRRLY 277
            +   QKF GLP+TG+L+ R  + M++PRCG+ D  E    +    S + TS          K++T+ + +  + +    V  +++KA  +W     + F++V     DI I F    HGD   FDG G  LAHAF P +G      L GD HFD  E++   S  G N F++ ATHE+GHSLG+ HS    +VM+P Y     +  KL + DI+ +++LY
Sbjct:   59 LKEMQKFFGLPITGMLNSRVIEIMQKPRCGVPDVAEY---SLFPNSPKWTS----------KVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTG------LGGDAHFDEDERWTDGSSLGIN-FLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 258

The following BLAST results are available for this feature:

BLAST of TCONS_00002805-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002805-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MMP7	1.328e-35	35.45	Matrilysin OS=Homo sapiens GN=MMP7 PE=1 SV=1	[more]

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TCONS_00002805-protein (polypeptide) - C. hemisphaerica