Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00001936-protein ID=TCONS_00001936-protein|Name=TCONS_00001936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=625bp
MTLFGCCRGDPDENLPLTQQNQKKTSNQNVGTVNGDETKETWGNKAEFLL
ASIGLAVGLGNIWRFPYLCQKNGGGAFLIPYLLMMIMEGFPLFFIEYAIG
QRFKQSAVGCWGKIHPALRGIGVGSIILSGFLCIYYVAVIAWSFFYLFVS
MRKDLPWERNNCPSSLQLLNNSVTNETCCTRDPEAYYFYVTALNAASSIE
STDGKGMSWQLILCLLLSWVLVYACVVKGVKSSGKAVYFTATFPYLILII
LLIAGALLTGADIGLVAFFKPDFSRLLDPKIWLDAAGQMFFTLSIGFGAL
LAFASYMPTKNNCMKDAYTVVSINCFTSILAGIVVFSILGHREQETGQSA
IESGSGPGLVFITFANAFLQMDGAPFWAVCFFVMLILLGIDSEFGTFEAF
VYPFYDMKWITMNKSLFSALVAIGMFLIGLCFVSPVGYYVFQIFDDYSLS
FGLLAVGFFQTISVSWVYGNDKFANDIEYMTGRRPLKLWLICWKYISPIV
IMIIIISNIYLLSIGEMTYKAYVGCFAGFAEPVIEKEYPAWAKFVIIVLI
CLPIAPIFIYFIKDLVQNPQEWKDGFQNRLCHPIEYAFDPSDYDLNRRYH
IEDLTMTEKDQNNAASAEEEHEIKV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000175 | Na/ntran_symport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005328 | neurotransmitter:sodium symporter activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006836 | neurotransmitter transport |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006836 |
neurotransmitter transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0005328 |
neurotransmitter:sodium symporter activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000175 | Sodium:neurotransmitter symporter | PRINTS | PR00176 | NANEUSMPORT | coord: 47..68
score: 67.36
coord: 450..470
score: 36.07
coord: 490..510
score: 27.01
coord: 76..95
score: 51.97
coord: 236..253
score: 62.57
coord: 120..146
score: 37.52
coord: 318..338
score: 44.42
coord: 371..390
score: 50.74 |
| IPR000175 | Sodium:neurotransmitter symporter | PFAM | PF00209 | SNF | coord: 39..566
e-value: 2.6E-168
score: 560.9 |
| IPR000175 | Sodium:neurotransmitter symporter | PROSITE | PS00610 | NA_NEUROTRAN_SYMP_1 | coord: 63..77 |
| IPR000175 | Sodium:neurotransmitter symporter | PROSITE | PS50267 | NA_NEUROTRAN_SYMP_3 | coord: 38..570
score: 87.505 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 10..35 |
| None | No IPR available | SUPERFAMILY | 161070 | SNF-like | coord: 39..565 |
Blast
BLAST of TCONS_00001936-protein vs. Swiss-Prot (Human)
Match: S6A18 (Sodium-dependent neutral amino acid transporter B(0)AT3 OS=Homo sapiens GN=SLC6A18 PE=2 SV=2) HSP 1 Score: 399.438 bits (1025), Expect = 1.966e-131 Identity = 223/577 (38.65%), Postives = 319/577 (55.29%), Query Frame = 0 Query: 35 GDETKETWGNKAEFLLASIGLAVGLGNIWRFPYLCQKNGGGAFLIPYLLMMIMEGFPLFFIEYAIGQRFKQSAVGCWGKIHPALRGIGVGSIILSGFLCIYYVAVIAWSFFYLFVSMRKDLPWERNNCPSSLQLLNNSVTNETCCTRDPEAYYFYVTALNAASSIESTDGKGMSWQLILCLLLSWVLVYACVVKGVKSSGKAVYFTATFPYLILIILLIAGALLTGADIGLVAFFKPDFSRLLDPKIWLDAAGQMFFTLSIGFGALLAFASYMPTKNNCMKDAYTVVSINCFTSILAGIVVFSILGHREQETGQSAIE-----------------------------------------------------SGSGPGLVFITFANAFLQMDGAPFWAVCFFVMLILLGIDSEFGTFEAFVYPFYDM----KWITMNKSLFSALVAIGMFLIGLCFVSPVGYYVFQIFDDYSLSFGLLAVGFFQTISVSWVYGNDKFANDIEYMTGRRPLKLWLICWKYISPIVIMIIIISNIYLLSIGEMTYKAYVGCFAGFAEPVIEKEYPAWAKFVIIVLICLPI 554
GDE + W NKA++LL+ G AVGLGNIWRFPYLCQ GGGAFLIPY++ ++ EG P+F +E AIGQR ++ +VG W I P L G+G+G + LS + +YY ++AW +YL S + LPW ++CP L N + E C +Y++Y LN + I D + W L++CL SW +VY CV++G++++GK +YFTA FPYL+L I LI G L GA GL+ F P+ L +P++WLDAA Q+FF+LS+ FG +AFASY +N+C KDA + +N TS+ A I VFS+LG + + ++ S SGPGL F+ F L M GAP WA+ FF ML LG+ + FGT EA + P D+ +W+ K + LV + FL CF G Y +IFD+++ S LL + F + + V +VYG +F +DI +MTGRRP W + W+ +SP+ ++ I ++ I LL + YKA+ + F EK YP WA+ ++L LP+
Sbjct: 15 GDE-RPKWDNKAQYLLSCTGFAVGLGNIWRFPYLCQTYGGGAFLIPYVIALVFEGIPIFHVELAIGQRLRKGSVGVWTAISPYLSGVGLGCVTLSFLISLYYNTIVAWVLWYLLNSFQHPLPW--SSCPPDL---NRTGFVEECQGSSAVSYFWYRQTLNITADIN--DSGSIQWWLLICLAASWAVVYMCVIRGIETTGKVIYFTALFPYLVLTIFLIRGLTLPGATKGLIYLFTPNMHILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNSPRNDCQKDAVVIALVNRMTSLYASIAVFSVLGFKATNDYEHCLDRNILSLINDFDFPEQSISRDDYPAVLMHLNATWPKRVAQLPLKACLLEDFLDKSASGPGLAFVVFTETDLHMPGAPVWAMLFFGMLFTLGLSTMFGTVEAVITPLLDVGVLPRWVP--KEALTGLVCLVCFLSATCFTLQSGNYWLEIFDNFAASPNLLMLAFLEVVGVVYVYGMKRFCDDIAWMTGRRPSPYWRLTWRVVSPL-LLTIFVAYIILLFWKPLRYKAWNPKYELFPS-RQEKLYPGWARAACVLLSLLPV 579
The following BLAST results are available for this feature:
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