TCONS_00001865-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001865-protein
Unique Name	TCONS_00001865-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	355

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001865-protein ID=TCONS_00001865-protein|Name=TCONS_00001865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
MVTSVINTNSSNWSNDYNNEEDMASKTLLYDSNPNDDMWRKFSLPLTPPS
SPPRTFGETSECNDNTQDIANRLQDVCDSLDSAFDITSCVLPDAKYLRSK
LISDCMWSGNHGSDTKEKSRNVTFTQPKLSIDSIDTEEDLYPTPCASPIP
NVTTEHGDYPSSTDCVDPTTVFPLPSSQENLPSMLSGQSDSDEEIDVVTV
DAIPSTPITIGIKRKQAPNTIILAKLQTSNPQVCFKRTKSAPSRIQNDKP
DRASRRSATSPYDSDPETRRATHNVLERKRRIDLKKSFERLRECVPNLEK
IDKTPKVIVLKKAANHIEDLKREEKELDEQKQKLRQRNEDLMRKLELLKA
VCNID

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000985	XLOC_000985	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001865	TCONS_00001865	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002418	Tscrpt_reg_Myc
IPR011598	bHLH_dom
IPR012682	Tscrpt_reg_Myc_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0046983	protein dimerization activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 310..351
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..272
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..59
None	No IPR available	CDD	cd14686	bZIP	coord: 311..346 e-value: 0.00367086 score: 33.6729
IPR002418	Transcription regulator Myc	PRINTS	PR00044	LEUZIPPRMYC	coord: 303..316 score: 53.49 coord: 34..52 score: 55.09 coord: 100..115 score: 42.08 coord: 261..277 score: 47.19 coord: 278..293 score: 54.58
IPR002418	Transcription regulator Myc	PIRSF	PIRSF001705	Myc_protein	coord: 177..351 e-value: 1.1E-22 score: 78.5 coord: 10..191 e-value: 2.8E-13 score: 47.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 274..326 e-value: 4.9E-13 score: 59.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	4.10.280.10		coord: 265..347 e-value: 4.7E-16 score: 58.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 269..320 e-value: 8.6E-13 score: 47.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 268..320 score: 15.472
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	CDD	cd00083	HLH	coord: 266..325 e-value: 6.75351E-16 score: 70.3207
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 266..345
IPR012682	Transcription regulator Myc, N-terminal	PFAM	PF01056	Myc_N	coord: 17..180 e-value: 5.5E-12 score: 46.1

Blast

[Close]

BLAST of TCONS_00001865-protein vs. Swiss-Prot (Human)
Match: MYC (Myc proto-oncogene protein OS=Homo sapiens GN=MYC PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.404e-25
Identity = 106/408 (25.98%), Postives = 169/408 (41.42%), Query Frame = 0

Query:   34 PNDDMWRKFSLPLTPPSSPPRTFGETS---------------ECNDNTQDIANRLQDVCDSLDSAFDITS--CVLPDAKYLRSKLISDCMWSGNHGSDTKEKSRNVTFTQPKLSIDSIDTEEDLYPTPCASPIPNVTTEHGDY-----PSSTDCVDPTTVFPLPSSQENLPSMLSGQ-------------------SDSDEEIDVVTVDAIPSTPI-------------TIGIKRKQAPNT-------------------IILAKLQTSNPQVCFKRTKSAPSRIQNDKPDR--------------ASRRSATSPYDSDPE--TRRATHNVLERKRRIDLKKSFERLRECVPNLEKIDKTPKVIVLKKAANHIEDLKREEKELDEQKQKLRQRNEDLMRKLELLKAVC 352
            P++D+W+KF L  TPP SP R  G  S               +    +   A++L+ V + L       S  C   D  ++++ +I DCMWSG         S        KL+      ++   P P      +V +    Y      ++++C+DP+ VFP P +  + P   + Q                        E  V+  +  P+T                + ++++QAP                     ++L +   S  Q  +    +AP   + D P                ++ R  TSP  SD E   +R THNVLER+RR +LK+SF  LR+ +P LE  +K PKV++LKKA  +I  ++ EE++L  ++  LR+R E L  KLE L+  C
Sbjct:   45 PSEDIWKKFELLPTPPLSPSRRSGLCSPSYVAVTPFSLRGDNDGGGGSFSTADQLEMVTELLGGDMVNQSFICDPDDETFIKNIIIQDCMWSGF--------SAAAKLVSEKLASYQAARKDSGSPNPARGH--SVCSTSSLYLQDLSAAASECIDPSVVFPYPLNDSSSPKSCASQDSSAFSPSSDSLLSSTESSPQGSPEPLVLHEETPPTTSSDSEEEQEDEEEIDVVSVEKRQAPGKRSESGSPSAGGHSKPPHSPLVLKRCHVSTHQHNY----AAPPSTRKDYPAAKRVKLDSVRVLRQISNNRKCTSPRSSDTEENVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLRNSC 438

The following BLAST results are available for this feature:

BLAST of TCONS_00001865-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001865-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MYC	1.404e-25	25.98	Myc proto-oncogene protein OS=Homo sapiens GN=MYC ...	[more]

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TCONS_00001865-protein (polypeptide) - C. hemisphaerica