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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001865 ID=TCONS_00001865|Name=TCONS_00001865|organism=Clytia hemisphaerica|type=transcript|length=2404bp
GTTTACTCTTCGATAGACATAAACGGAGGACAGCTTTGAAAGCTGCTCAA
ACGAGAAAACCAATATCTCTCGTACGAAGTAGTAATTGGACAGATCAACT
TAGATTATTATGGTGACTAGTGTTATAAATACGAATTCAAGTAATTGGTC
GAACGACTACAACAACGAAGAAGATATGGCTTCGAAAACATTACTCTACG
ACTCGAATCCTAACGATGATATGTGGCGGAAATTTTCACTACCTCTTACC
CCGCCAAGTTCTCCCCCGAGAACCTTTGGCGAAACTTCGGAATGTAATGA
CAACACTCAAGATATTGCTAATCGTTTACAAGACGTTTGTGATAGTTTAG
ACTCCGCGTTTGATATTACAAGTTGTGTATTACCGGACGCTAAATATTTA
CGCTCAAAGTTGATATCGGATTGTATGTGGTCGGGAAATCATGGATCAGA
CACGAAAGAGAAATCTCGTAATGTTACTTTTACTCAACCGAAACTTTCTA
TCGACTCTATCGACACAGAAGAAGACCTTTATCCGACTCCTTGTGCAAGC
CCCATCCCAAACGTTACGACAGAACATGGTGATTATCCGTCATCTACCGA
TTGTGTCGACCCTACCACCGTTTTCCCTCTCCCTTCGTCACAAGAAAATC
TACCCTCAATGCTCTCTGGACAATCTGACTCAGacGAAGAAATTGACGTT
GTGACAGTTGACGCAATTCCTTCCACTCCCATCACGATTGGAATCAAACG
CAAACAAGCTCCAAACACGATAATTTTGGCAAAACTTCAAACGTCAAACC
CACAAGTCTGTTTCAAAAGAACGAAAAGTGCACCCAGCCGAATTCAAAAT
GATAAACCAGACCGTGCTTCACGCCGATCAGCTACAAGTCCTTACGATTC
TGATCCTGAAACGAGGCGAGCCACTCATAACGTCCTCGAAAGAAAACGAA
GAATCgatttgaagaaaagttttgaaagattACGTGAATGTGTCccaaat
cttgagaaaattgataaaactCCGAAagttattgttttgaaaaaggcAGC
AAACCATATCGAGGACTTAAAACGTGAAGAAAAGGAGTTGGACGAACAGA
AACAAAAATTGCGACAACGTAACGAAGACTTGATGAGAAAATTAGAATTA
TTGAAGGCTGTATGTAATATTGATTGAAATTGTGGAGCTTAGCTAGCTGA
TGCTTTTTTAAGATGCACCCTAAAAGTATATATATGTCAGGAGGAATTGT
ATAATTTCTATCGCAAGAAAAAGGGTTGGTCTTGTTAGGAACTAAATAGT
CAAAACACTAAAACATAAACCCAaacttttttcttccaaaaaattatatt
ttaaaactgaaatgtttatatgtaaatattcaaaaaactatttaaaagat
attaaaGATCTCGTGTAAAAACTATATGCATTTATACTTGTAAGATTTTA
TTAGTTTATGACTTAAAACCAAGGCTTTTTTCGTTATCTAAACTCCCGAA
ATTATTTTAGGGAATGATAGCtaattttttaattacttttttcaattttt
ctttttagatagCCAGCTTATAAAATGCTgtatttgttcaaatttttcat
aaagtCATTTTCAGGAGGCTTTCTCTTTGTCGTGTTTTAATAAGATTTTG
ATAACACTGATAagtctttttttgtttgttaacGATTTCGACATCATTTT
TATGTGTTTTTGGGGTTTTCCACTATTTTTTATGTATTGCTCTTTTTACA
GTTCTTTTCCTTTGTCGAATTTTTTTACATCTATCATCATGTTAAATCAG
CTCAagaattttgattgaatttacaAGTATTTGAAATTTCGTCCATTCAA
TCCTTTACGGGGAGGGGTATGAAAAATTCGACATAGGAAAAGCGttgcaa
ttttcatatttttattaccttttTGTGTTCGgataaaaatgttgttttct
aagggaaagttagttctaagataaTATTTTGACTCGCTTTTTCACAACTA
GTAAAGAAATCTTGTATTTTCGAGCACTTTTGTTTACATTGGTTTGCAAa
ctaataaaagtttttttctcaaagcttttgttagaaattttatttcaaac
ataTTTGAATTTAGTTAACATTTGTATTaaaatgaattattttgaatttt
tctgatGCTTATACTCGGAGGAATACTTAAAAAGCTCCTAACTTGTAATT
CGATGTTTCACTAGACGACTCatgagaaaaaagaatttttataaaaagag
aaGTCGAATAACTTATGTATCGTCTTTGTCTGACTGTTTACCTTCCCCCT
AATGATTgtcaatttatgaaaaagtagCTTTTCGAAACAATATTCTTTGC
TTGGTAATATGAATCTGACACGAATAATATTGAATTGGATCAGAAAGTAA
ATAC Run BLAST on NCBI protein sequence of TCONS_00001865-protein >TCONS_00001865-protein ID=TCONS_00001865-protein|Name=TCONS_00001865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
MVTSVINTNSSNWSNDYNNEEDMASKTLLYDSNPNDDMWRKFSLPLTPPS
SPPRTFGETSECNDNTQDIANRLQDVCDSLDSAFDITSCVLPDAKYLRSK
LISDCMWSGNHGSDTKEKSRNVTFTQPKLSIDSIDTEEDLYPTPCASPIP
NVTTEHGDYPSSTDCVDPTTVFPLPSSQENLPSMLSGQSDSDEEIDVVTV
DAIPSTPITIGIKRKQAPNTIILAKLQTSNPQVCFKRTKSAPSRIQNDKP
DRASRRSATSPYDSDPETRRATHNVLERKRRIDLKKSFERLRECVPNLEK
IDKTPKVIVLKKAANHIEDLKREEKELDEQKQKLRQRNEDLMRKLELLKA
VCNID Run BLAST on NCBI transcript from alignment at sc0000012:58474..61516- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001865 ID=TCONS_00001865|Name=TCONS_00001865|organism=Clytia hemisphaerica|type=transcript|length=3043bp|location=Sequence derived from alignment at sc0000012:58474..61516- (Clytia hemisphaerica)
GTTTACTCTTCGATAGACATAAACGGAGGACAGCTTTGAAAGCTGCTCAA
ACGAGAAAACCAATGTAAGTACTATGAAGTCTTTCACAATTTTCATTCGT
TTTCCATCTAAAAGTTTGTTGTTAGTAAAGTTTTGTAACTTTGGCTTTTT
CAGAAAGATTTGTACCTGCTGGGGCACGGCATCACTTGCCTCATGTTTTA
GCAGAGCTTGCAATAAAAGTTTCTGTTTTTCAAAATTTTGTTTATTTTTT
CCATAGATCTCTCGTACGAAGTAGTAATTGGACAGATCAACTTAGATTAT
TGTAAGTATTACATTTATTTTATCTAGCCTTTGCGATAAAAATGGGTACA
TACTTATGTGCTGTTGCTAGCAACCTTTCTGTTTGTGAATCACCACAGGG
ACTCTAATTAGATGTGCTATGTCTCATTGCTCCTTTTTATTTTAAAAGCT
TGTTGTATAAAGTTATGAATGAAAGCGTATTCATCAAAGTTCCTCTTATT
TTTAGATGGTGACTAGTGTTATAAATACGAATTCAAGTAATTGGTCGAAC
GACTACAACAACGAAGAAGATATGGCTTCGAAAACATTACTCTACGACTC
GAATCCTAACGATGATATGTGGCGGAAATTTTCACTACCTCTTACCCCGC
CAAGTTCTCCCCCGAGAACCTTTGGCGAAACTTCGGAATGTAATGACAAC
ACTCAAGATATTGCTAATCGTTTACAAGACGTTTGTGATAGTTTAGACTC
CGCGTTTGATATTACAAGTTGTGTATTACCGGACGCTAAATATTTACGCT
CAAAGTTGATATCGGATTGTATGTGGTCGGGAAATCATGGATCAGACACG
AAAGAGAAATCTCGTAATGTTACTTTTACTCAACCGAAACTTTCTATCGA
CTCTATCGACACAGAAGAAGACCTTTATCCGACTCCTTGTGCAAGCCCCA
TCCCAAACGTTACGACAGAACATGGTGATTATCCGTCATCTACCGATTGT
GTCGACCCTACCACCGTTTTCCCTCTCCCTTCGTCACAAGAAAATCTACC
CTCAATGCTCTCTGGACAATCTGACTCAGGTAAACATTTAATTTTTGGCT
TTTTCTATAGTTAGGAATCGACATTTTTAACAGTTTAGACGAATTAAAAA
GAATTGAAAATGTAGAATGACCCTTAAAATCTTTCGAACATCATATTCGA
ACGTTTTTCTCGCTTCTGATTGGTCGATGAAACGATTGCGAAATACACCC
ATAATTTTCGAATGTTTATGTTTGCAATTTTTTCTTTCCTAAAAAAAATG
TTCATTCATTTTTCTTCTTCAGACGAAGAAATTGACGTTGTGACAGTTGA
CGCAATTCCTTCCACTCCCATCACGATTGGAATCAAACGCAAACAAGCTC
CAAACACGATAATTTTGGCAAAACTTCAAACGTCAAACCCACAAGTCTGT
TTCAAAAGAACGAAAAGTGCACCCAGCCGAATTCAAAATGATAAACCAGA
CCGTGCTTCACGCCGATCAGCTACAAGTCCTTACGATTCTGATCCTGAAA
CGAGGCGAGCCACTCATAACGTCCTCGAAAGAAAACGAAGAATCGATTTG
AAGAAAAGTTTTGAAAGATTACGTGAATGTGTCCCAAATCTTGAGAAAAT
TGATAAAACTCCGAAAGTTATTGTTTTGAAAAAGGCAGCAAACCATATCG
AGGACTTAAAACGTGAAGAAAAGGAGTTGGACGAACAGAAACAAAAATTG
CGACAACGTAACGAAGACTTGATGAGAAAATTAGAATTATTGAAGGCTGT
ATGTAATATTGATTGAAATTGTGGAGCTTAGCTAGCTGATGCTTTTTTAA
GATGCACCCTAAAAGTATATATATGTCAGGAGGAATTGTATAATTTCTAT
CGCAAGAAAAAGGGTTGGTCTTGTTAGGAACTAAATAGTCAAAACACTAA
AACATAAACCCAAACTTTTTTCTTCCAAAAAATTATATTTTAAAACTGAA
ATGTTTATATGTAAATATTCAAAAAACTATTTAAAAGATATTAAAGATCT
CGTGTAAAAACTATATGCATTTATACTTGTAAGATTTTATTAGTTTATGA
CTTAAAACCAAGGCTTTTTTCGTTATCTAAACTCCCGAAATTATTTTAGG
GAATGATAGCTAATTTTTTAATTACTTTTTTCAATTTTTCTTTTTAGATA
GCCAGCTTATAAAATGCTGTATTTGTTCAAATTTTTCATAAAGTCATTTT
CAGGAGGCTTTCTCTTTGTCGTGTTTTAATAAGATTTTGATAACACTGAT
AAGTCTTTTTTTGTTTGTTAACGATTTCGACATCATTTTTATGTGTTTTT
GGGGTTTTCCACTATTTTTTATGTATTGCTCTTTTTACAGTTCTTTTCCT
TTGTCGAATTTTTTTACATCTATCATCATGTTAAATCAGCTCAAGAATTT
TGATTGAATTTACAAGTATTTGAAATTTCGTCCATTCAATCCTTTACGGG
GAGGGGTATGAAAAATTCGACATAGGAAAAGCGTTGCAATTTTCATATTT
TTATTACCTTTTTGTGTTCGGATAAAAATGTTGTTTTCTAAGGGAAAGTT
AGTTCTAAGATAATATTTTGACTCGCTTTTTCACAACTAGTAAAGAAATC
TTGTATTTTCGAGCACTTTTGTTTACATTGGTTTGCAAACTAATAAAAGT
TTTTTTCTCAAAGCTTTTGTTAGAAATTTTATTTCAAACATATTTGAATT
TAGTTAACATTTGTATTAAAATGAATTATTTTGAATTTTTCTGATGCTTA
TACTCGGAGGAATACTTAAAAAGCTCCTAACTTGTAATTCGATGTTTCAC
TAGACGACTCATGAGAAAAAAGAATTTTTATAAAAAGAGAAGTCGAATAA
CTTATGTATCGTCTTTGTCTGACTGTTTACCTTCCCCCTAATGATTGTCA
ATTTATGAAAAAGTAGCTTTTCGAAACAATATTCTTTGCTTGGTAATATG
AATCTGACACGAATAATATTGAATTGGATCAGAAAGTAAATAC Coding sequence (CDS) from alignment at sc0000012:58474..61516- >TCONS_00001865 ID=TCONS_00001865|Name=TCONS_00001865|organism=Clytia hemisphaerica|type=CDS|length=2136bp|location=Sequence derived from alignment at sc0000012:58474..61516- (Clytia hemisphaerica)
ACGAAGAAATTGACGTTGTGACAGTTGACGCAATTCCTTCCACTCCCATC
ACGATTGGAATCAAACGCAAACAAGCTCCAAACACGATAATTTTGGCAAA
ACTTCAAACGTCAAACCCACAAGTCTGTTTCAAAAGAACGAAAAGTGCAC
CCAGCCGAATTCAAAATGATAAACCAGACCGTGCTTCACGCCGATCAGCT
ACAAGTCCTTACGATTCTGATCCTGAAACGAGGCGAGCCACTCATAACGT
CCTCGAAAGAAAACGAAGAATCGATTTGAAGAAAAGTTTTGAAAGATTAC
GTGAATGTGTCCCAAATCTTGAGAAAATTGATAAAACTCCGAAAGTTATT
GTTTTGAAAAAGGCAGCAAACCATATCGAGGACTTAAAACGTGAAGAAAA
GGAGTTGGACGAACAGAAACAAAAATTGCGACAACGTAACGAAGACTTGA
TGAGAAAATTAGAATTATTGAAGGCTGTATGTAATATTGATTGAATGGTG
ACTAGTGTTATAAATACGAATTCAAGTAATTGGTCGAACGACTACAACAA
CGAAGAAGATATGGCTTCGAAAACATTACTCTACGACTCGAATCCTAACG
ATGATATGTGGCGGAAATTTTCACTACCTCTTACCCCGCCAAGTTCTCCC
CCGAGAACCTTTGGCGAAACTTCGGAATGTAATGACAACACTCAAGATAT
TGCTAATCGTTTACAAGACGTTTGTGATAGTTTAGACTCCGCGTTTGATA
TTACAAGTTGTGTATTACCGGACGCTAAATATTTACGCTCAAAGTTGATA
TCGGATTGTATGTGGTCGGGAAATCATGGATCAGACACGAAAGAGAAATC
TCGTAATGTTACTTTTACTCAACCGAAACTTTCTATCGACTCTATCGACA
CAGAAGAAGACCTTTATCCGACTCCTTGTGCAAGCCCCATCCCAAACGTT
ACGACAGAACATGGTGATTATCCGTCATCTACCGATTGTGTCGACCCTAC
CACCGTTTTCCCTCTCCCTTCGTCACAAGAAAATCTACCCTCAATGCTCT
CTGGACAATCTGACTCAGACGAAGAAATTGACGTTGTGACAGTTGACGCA
ATTCCTTCCACTCCCATCACGATTGGAATCAAACGCAAACAAGCTCCAAA
CACGATAATTTTGGCAAAACTTCAAACGTCAAACCCACAAGTCTGTTTCA
AAAGAACGAAAAGTGCACCCAGCCGAATTCAAAATGATAAACCAGACCGT
GCTTCACGCCGATCAGCTACAAGTCCTTACGATTCTGATCCTGAAACGAG
GCGAGCCACTCATAACGTCCTCGAAAGAAAACGAAGAATCGATTTGAAGA
AAAGTTTTGAAAGATTACGTGAATGTGTCCCAAATCTTGAGAAAATTGAT
AAAACTCCGAAAGTTATTGTTTTGAAAAAGGCAGCAAACCATATCGAGGA
CTTAAAACGTGAAGAAAAGGAGTTGGACGAACAGAAACAAAAATTGCGAC
AACGTAACGAAGACTTGATGAGAAAATTAGAATTATTGAAGGCTGTATGT
AATATTGATTGAATGGTGACTAGTGTTATAAATACGAATTCAAGTAATTG
GTCGAACGACTACAACAACGAAGAAGATATGGCTTCGAAAACATTACTCT
ACGACTCGAATCCTAACGATGATATGTGGCGGAAATTTTCACTACCTCTT
ACCCCGCCAAGTTCTCCCCCGAGAACCTTTGGCGAAACTTCGGAATGTAA
TGACAACACTCAAGATATTGCTAATCGTTTACAAGACGTTTGTGATAGTT
TAGACTCCGCGTTTGATATTACAAGTTGTGTATTACCGGACGCTAAATAT
TTACGCTCAAAGTTGATATCGGATTGTATGTGGTCGGGAAATCATGGATC
AGACACGAAAGAGAAATCTCGTAATGTTACTTTTACTCAACCGAAACTTT
CTATCGACTCTATCGACACAGAAGAAGACCTTTATCCGACTCCTTGTGCA
AGCCCCATCCCAAACGTTACGACAGAACATGGTGATTATCCGTCATCTAC
CGATTGTGTCGACCCTACCACCGTTTTCCCTCTCCCTTCGTCACAAGAAA
ATCTACCCTCAATGCTCTCTGGACAATCTGACTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001865-exon-sc0000012-1575043694:61453..61516 | TCONS_00001865-exon-sc0000012-1575043694:61453..61516 | Clytia hemisphaerica | exon |
| TCONS_00001865-exon-sc0000012-1575043694:61216..61260 | TCONS_00001865-exon-sc0000012-1575043694:61216..61260 | Clytia hemisphaerica | exon |
| TCONS_00001865-exon-sc0000012-1575043694:60438..61011 | TCONS_00001865-exon-sc0000012-1575043694:60438..61011 | Clytia hemisphaerica | exon |
| TCONS_00001865-exon-sc0000012-1575043694:58474..60194 | TCONS_00001865-exon-sc0000012-1575043694:58474..60194 | Clytia hemisphaerica | exon |
| TCONS_00001865-exon-sc0000012-1510915933:61453..61516 | TCONS_00001865-exon-sc0000012-1510915933:61453..61516 | Clytia hemisphaerica | exon |
| TCONS_00001865-exon-sc0000012-1510915933:61216..61260 | TCONS_00001865-exon-sc0000012-1510915933:61216..61260 | Clytia hemisphaerica | exon |
| TCONS_00001865-exon-sc0000012-1510915933:60438..61011 | TCONS_00001865-exon-sc0000012-1510915933:60438..61011 | Clytia hemisphaerica | exon |
| TCONS_00001865-exon-sc0000012-1510915933:58474..60194 | TCONS_00001865-exon-sc0000012-1510915933:58474..60194 | Clytia hemisphaerica | exon |
| TCONS_00001865-exon-sc0000012-1491911889:61453..61516 | TCONS_00001865-exon-sc0000012-1491911889:61453..61516 | Clytia hemisphaerica | exon |
| TCONS_00001865-exon-sc0000012-1491911889:61216..61260 | TCONS_00001865-exon-sc0000012-1491911889:61216..61260 | Clytia hemisphaerica | exon |
| TCONS_00001865-exon-sc0000012-1491911889:60438..61011 | TCONS_00001865-exon-sc0000012-1491911889:60438..61011 | Clytia hemisphaerica | exon |
| TCONS_00001865-exon-sc0000012-1491911889:58474..60194 | TCONS_00001865-exon-sc0000012-1491911889:58474..60194 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:58474..61516 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | protein dimerization activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0046983 |
protein dimerization activity |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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